PROSITE entry PS51763

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General information about the entry

Entry name [info]	CBM10
Accession [info]	PS51763
Entry type [info]	MATRIX
Date [info]	01-JUN-2015 CREATED; 01-JUN-2015 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC51763
Associated ProRule [info]	PRU01099

Name and characterization of the entry

Description [info]

CBM10 (carbohydrate-binding type-10) domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=37;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=37;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7871470; R2=0.0074617; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=833; N_SCORE=9.0; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=498; N_SCORE=6.5; MODE=1; TEXT='R!';
/DEFAULT: M0=-37; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='E';  M= -30, -73, -15,  36, -69,   6, -60, -18,  19, -37,  34, -16,   7,  26, -56,  22,  35, -10, -77, -12;
/M: SY='C';  M= -61, 142, -74, -19, -72, -75, -76, -30, -68, -69, -67, -65,  12, -74,  -5, -16, -25, -65, -95, -79;
/M: SY='W';  M= -58, -73,  13,  -5,   3, -33,   5, -28,   2, -71, -65,  62,   9,  17, -58,  38,  13, -34,  72, -58;
/M: SY='W';  M=  23, -74, -64,  -2, -65,  13, -67, -31, -61, -71, -66, -59,  34, -11, -67,  53,   5, -32, 100,  -3;
/M: SY='Y';  M=  16,  -4, -18,  20, -59,  11, -55, -68,  17, -41, -61,  13, -68,  43, -55,  -4,   8, -32,  19,  59;
/I:         I=-18; MD=-45;
/M: SY='G';  M=  11,  28,   1,   9, -23,  51, -67,  17,  -6, -68, -64, -56,  -4,  17, -65,  15, -59, -28, -78, -69; D=-18;
/I:         I=-18; MD=-45;
/M: SY='W';  M= -24, -74,  20, -61, -20, -30, -62, -65,  -4,   8, -61,  39, -73, -12, -64,   5,  51, -64,  57,  28; D=-18;
/I:         I=-18; MI=0; MD=-45; IM=0; DM=-45;
/M: SY='G';  M=  23,   5, -18,  -1, -29,  72, -69, -33, -64, -44, -69, -57,  -6, -10, -15, -27, -24, -71, -77, -73; D=-18;
/I:         I=-18; DM=-45;
/M: SY='Y';  M= -66, -80, -71, -71, -30,  -8, -47, -55, -64, -28, -52, -69,  11, -62, -13, -63,   2,   2,  50, 115;
/M: SY='P';  M=  -4, -82, -12, -23, -74, -30, -63, -68,  31, -74, -65, -62,  97,  11, -19, -26, -58,  -8, -74,  12;
/M: SY='C';  M= -61, 125, -79, -78, -17, -78, -72,  11, -74,  -3,  -6, -69, -84, -76, -77, -18, -18,  19, -77,  36;
/M: SY='C';  M= -60, 151, -79, -80, -71, -75, -80, -78, -76, -69, -69, -66, -90, -82, -82,  -8, -59, -66,-100, -81;
/M: SY='S';  M= -27,  -3, -17,   7, -76, -28, -55, -71,  -3, -74, -66,  56, -13,  40, -10,  61,  15, -25, -83, -68;
/M: SY='T';  M= -30, -73,  39, -21, -23,  -8, -60, -28, -22, -75, -69,  46,   6,  19, -63,  32,  49, -68, -86, -69;
/I:         I=-18; MI=0; MD=-45; IM=0; DM=-45;
/M: SY='C';  M= -86,  94, -93, -97, -99, -43, -98, -40, -38, -96, -93,   4,-103, -96, -97, -35,  26, -88,-120,-102; D=-18;
/I:         I=-18; DM=-45;
/M: SY='T';  M= -20, -99,   1,  14,-100, -95, -88, -88, -34, -41, -88,   2, -23, -16, -87, -78,  22, -18,-112, -96; D=-18;
/I:         I=-18; DM=-45;
/M: SY='V';  M= -11, -86, -82,   0, -80, -90, -90,   6, -27, -68, -68, -11, -89, -80, -84,  -9, -17,  53,-101, -82; D=-18;
/I:         I=-18; DM=-45;
/M: SY='Y';  M= -27, -87, -15, -31,   8, -85, -73,  -8, -34, -70, -69, -75, -87,   8, -24,  20, -24,  21, -77,  47; D=-18;
/I:         I=-18; DM=-45;
/M: SY='Y';  M= -35, -88, -28, -26, -15, -87, -66, -66, -79,   3, -64, -79, -90, -75, -80,   2,   3, -14, -63,  84; D=-18;
/I:         I=-18; DM=-45;
/M: SY='T';  M= -72, -85,  49,  11, -79, -84, -74, -74, -71, -80, -78, -63, -79, -71, -78, -30,  62,  -1, -95,  17; D=-18;
/I:         I=-18; DM=-45;
/M: SY='D';  M= -79, -95,  84, -56, -97, -16,  11, -88, -74, -92, -89, -58,  31, -73, -81, -35, -72, -13,-110, -84; D=-18;
/I:         I=-18; DM=-45;
/M: SY='D';  M=  -1, -78,  88,  16, -84, -65, -58, -32, -56, -79, -75,  23,  -6,  13, -64,  -6,   7, -74, -94, -72;
/M: SY='D';  M= -31, -76,  71,  14, -84,  35, -59, -83, -58, -83, -77,  48, -69, -56, -66,  18,  13, -78, -91, -74;
/M: SY='G';  M= -58, -79,  59, -56, -81,  68, -63, -86,   8, -84, -76,   4, -70, -11, -65,  -3, -13, -81, -81,  -9;
/M: SY='G';  M= -30, -77,  34, -56, -80,  59, -63, -81,  47, -25, -71,  22, -70, -11, -56,   5, -61, -77, -81, -73;
/M: SY='W';  M= -78,-100,-104, -83,  -2, -77,-101, -71, -75, -22, -71, -97, -82, -75, -78, -85, -88, -85, 172, -30;
/M: SY='G';  M= -26, -77, -67, -76, -81,  93, -72, -85, -71, -26, -73, -54, -71, -68, -78,  11, -66, -80, -77, -77;
/M: SY='W';  M= -69, -83, -86, -79,  33, -82, -76,  32, -71, -53, -55, -22, -82, -73,  -4, -74, -68,  36, 125,  50;
/I:         I=-26; MI=0; MD=-65; IM=0; DM=-65;
/M: SY='E';  M= -31, -86, -40, 101, -90, -80, -60, -90, -49, -83, -78, -63, -63,  -6, -58, -19, -65, -82, -86, -79; D=-26;
/I:         I=-26; DM=-65;
/M: SY='N';  M= -67, -75,  10, -20, -83, -59,  15, -82, -21, -86, -74, 108, -76,  12, -59, -51, -21, -83, -99, -74;
/M: SY='N';  M= -23, -79,   0, -23, -81,  59,   1, -86, -61, -85, -74,  66, -74,  30, -67, -10, -62, -83, -83,  -3;
/M: SY='D';  M=  14, -80,  53,  27, -83, -69, -60, -31, -52, -77, -71,  25, -72,  31,  33,  -3, -23, -28, -89, -73;
/M: SY='W';  M= -64, -86, -78, -30, -56, -68, -80, -78, -69, -78, -76, -12, -77, -65, -73,  59, -23, -82, 146,  -5;
/M: SY='C';  M= -66, 147, -86, -86, -75, -82, -85, -80, -82, -71,  11, -72, -96, -88, -87, -69, -66, -70,-105, -85;
/M: SY='G';  M= -63,  17, -81, -83, -15,  50, -80,  50, -80,  25, -51, -71, -80, -77, -83, -32, -66,   8, -79, -66;
/M: SY='I';  M= -18,  35, -83, -82, -60,  13, -81,  68, -79,  12,   9, -73, -79, -75, -82,   2, -62,   2, -81, -66;
/M: SY='P';  M= -16,   9, -23, -60, -77, -38,  -1, -10,  30, -44, -67, -14,  56,  24,  16, -64,  -5, -31, -82,  -1;
/I:         E1=0; IE=-255; DE=-255;

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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	24 in 15 different sequences
Number of true positive hits	24 in 15 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	3
Feature key [info]	DOMAIN
Feature description [info]	CBM10
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

15 sequences

FAEB_PIREQ  (Q9Y871), GUNA_CELJU  (P10476), GUNB_CELJU  (P18126),

GUNB_NEOPA  (Q12647), GUNC_CELJU  (P27033), MAN5_CELJU  (B3PF24), 
MANA_PIRSP  (P55296), MANA_STRLI  (P51529), MANB_PIRSP  (P55297), 
MANC_PIRSP  (P55298), XS20E_NEOPA (B8YG19), XY11A_CELJA (Q59674), 
XYNA_CELJU  (P14768), XYNA_NEOPA  (P29127), XYNA_PIRSP  (Q12667)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

2 PDB

1E8R; 1QLD