PROSITE entry PS51763
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General information about the entry
Entry name [info] | CBM10 |
Accession [info] | PS51763 |
Entry type [info] | MATRIX |
Date [info] |
01-JUN-2015 CREATED;
01-JUN-2015 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51763 |
Associated ProRule [info] | PRU01099 |
Name and characterization of the entry
Description [info] | CBM10 (carbohydrate-binding type-10) domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=37; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=37; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7871470; R2=0.0074617; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=833; N_SCORE=9.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=498; N_SCORE=6.5; MODE=1; TEXT='R!'; /DEFAULT: M0=-37; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='E'; M= -30, -73, -15, 36, -69, 6, -60, -18, 19, -37, 34, -16, 7, 26, -56, 22, 35, -10, -77, -12; /M: SY='C'; M= -61, 142, -74, -19, -72, -75, -76, -30, -68, -69, -67, -65, 12, -74, -5, -16, -25, -65, -95, -79; /M: SY='W'; M= -58, -73, 13, -5, 3, -33, 5, -28, 2, -71, -65, 62, 9, 17, -58, 38, 13, -34, 72, -58; /M: SY='W'; M= 23, -74, -64, -2, -65, 13, -67, -31, -61, -71, -66, -59, 34, -11, -67, 53, 5, -32, 100, -3; /M: SY='Y'; M= 16, -4, -18, 20, -59, 11, -55, -68, 17, -41, -61, 13, -68, 43, -55, -4, 8, -32, 19, 59; /I: I=-18; MD=-45; /M: SY='G'; M= 11, 28, 1, 9, -23, 51, -67, 17, -6, -68, -64, -56, -4, 17, -65, 15, -59, -28, -78, -69; D=-18; /I: I=-18; MD=-45; /M: SY='W'; M= -24, -74, 20, -61, -20, -30, -62, -65, -4, 8, -61, 39, -73, -12, -64, 5, 51, -64, 57, 28; D=-18; /I: I=-18; MI=0; MD=-45; IM=0; DM=-45; /M: SY='G'; M= 23, 5, -18, -1, -29, 72, -69, -33, -64, -44, -69, -57, -6, -10, -15, -27, -24, -71, -77, -73; D=-18; /I: I=-18; DM=-45; /M: SY='Y'; M= -66, -80, -71, -71, -30, -8, -47, -55, -64, -28, -52, -69, 11, -62, -13, -63, 2, 2, 50, 115; /M: SY='P'; M= -4, -82, -12, -23, -74, -30, -63, -68, 31, -74, -65, -62, 97, 11, -19, -26, -58, -8, -74, 12; /M: SY='C'; M= -61, 125, -79, -78, -17, -78, -72, 11, -74, -3, -6, -69, -84, -76, -77, -18, -18, 19, -77, 36; /M: SY='C'; M= -60, 151, -79, -80, -71, -75, -80, -78, -76, -69, -69, -66, -90, -82, -82, -8, -59, -66,-100, -81; /M: SY='S'; M= -27, -3, -17, 7, -76, -28, -55, -71, -3, -74, -66, 56, -13, 40, -10, 61, 15, -25, -83, -68; /M: SY='T'; M= -30, -73, 39, -21, -23, -8, -60, -28, -22, -75, -69, 46, 6, 19, -63, 32, 49, -68, -86, -69; /I: I=-18; MI=0; MD=-45; IM=0; DM=-45; /M: SY='C'; M= -86, 94, -93, -97, -99, -43, -98, -40, -38, -96, -93, 4,-103, -96, -97, -35, 26, -88,-120,-102; D=-18; /I: I=-18; DM=-45; /M: SY='T'; M= -20, -99, 1, 14,-100, -95, -88, -88, -34, -41, -88, 2, -23, -16, -87, -78, 22, -18,-112, -96; D=-18; /I: I=-18; DM=-45; /M: SY='V'; M= -11, -86, -82, 0, -80, -90, -90, 6, -27, -68, -68, -11, -89, -80, -84, -9, -17, 53,-101, -82; D=-18; /I: I=-18; DM=-45; /M: SY='Y'; M= -27, -87, -15, -31, 8, -85, -73, -8, -34, -70, -69, -75, -87, 8, -24, 20, -24, 21, -77, 47; D=-18; /I: I=-18; DM=-45; /M: SY='Y'; M= -35, -88, -28, -26, -15, -87, -66, -66, -79, 3, -64, -79, -90, -75, -80, 2, 3, -14, -63, 84; D=-18; /I: I=-18; DM=-45; /M: SY='T'; M= -72, -85, 49, 11, -79, -84, -74, -74, -71, -80, -78, -63, -79, -71, -78, -30, 62, -1, -95, 17; D=-18; /I: I=-18; DM=-45; /M: SY='D'; M= -79, -95, 84, -56, -97, -16, 11, -88, -74, -92, -89, -58, 31, -73, -81, -35, -72, -13,-110, -84; D=-18; /I: I=-18; DM=-45; /M: SY='D'; M= -1, -78, 88, 16, -84, -65, -58, -32, -56, -79, -75, 23, -6, 13, -64, -6, 7, -74, -94, -72; /M: SY='D'; M= -31, -76, 71, 14, -84, 35, -59, -83, -58, -83, -77, 48, -69, -56, -66, 18, 13, -78, -91, -74; /M: SY='G'; M= -58, -79, 59, -56, -81, 68, -63, -86, 8, -84, -76, 4, -70, -11, -65, -3, -13, -81, -81, -9; /M: SY='G'; M= -30, -77, 34, -56, -80, 59, -63, -81, 47, -25, -71, 22, -70, -11, -56, 5, -61, -77, -81, -73; /M: SY='W'; M= -78,-100,-104, -83, -2, -77,-101, -71, -75, -22, -71, -97, -82, -75, -78, -85, -88, -85, 172, -30; /M: SY='G'; M= -26, -77, -67, -76, -81, 93, -72, -85, -71, -26, -73, -54, -71, -68, -78, 11, -66, -80, -77, -77; /M: SY='W'; M= -69, -83, -86, -79, 33, -82, -76, 32, -71, -53, -55, -22, -82, -73, -4, -74, -68, 36, 125, 50; /I: I=-26; MI=0; MD=-65; IM=0; DM=-65; /M: SY='E'; M= -31, -86, -40, 101, -90, -80, -60, -90, -49, -83, -78, -63, -63, -6, -58, -19, -65, -82, -86, -79; D=-26; /I: I=-26; DM=-65; /M: SY='N'; M= -67, -75, 10, -20, -83, -59, 15, -82, -21, -86, -74, 108, -76, 12, -59, -51, -21, -83, -99, -74; /M: SY='N'; M= -23, -79, 0, -23, -81, 59, 1, -86, -61, -85, -74, 66, -74, 30, -67, -10, -62, -83, -83, -3; /M: SY='D'; M= 14, -80, 53, 27, -83, -69, -60, -31, -52, -77, -71, 25, -72, 31, 33, -3, -23, -28, -89, -73; /M: SY='W'; M= -64, -86, -78, -30, -56, -68, -80, -78, -69, -78, -76, -12, -77, -65, -73, 59, -23, -82, 146, -5; /M: SY='C'; M= -66, 147, -86, -86, -75, -82, -85, -80, -82, -71, 11, -72, -96, -88, -87, -69, -66, -70,-105, -85; /M: SY='G'; M= -63, 17, -81, -83, -15, 50, -80, 50, -80, 25, -51, -71, -80, -77, -83, -32, -66, 8, -79, -66; /M: SY='I'; M= -18, 35, -83, -82, -60, 13, -81, 68, -79, 12, 9, -73, -79, -75, -82, 2, -62, 2, -81, -66; /M: SY='P'; M= -16, 9, -23, -60, -77, -38, -1, -10, 30, -44, -67, -14, 56, 24, 16, -64, -5, -31, -82, -1; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
Total number of hits | 24 in 15 different sequences |
Number of true positive hits | 24 in 15 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 3 |
Feature key [info] | DOMAIN |
Feature description [info] | CBM10 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
15 sequences
FAEB_PIREQ (Q9Y871), GUNA_CELJU (P10476), GUNB_CELJU (P18126), GUNB_NEOPA (Q12647), GUNC_CELJU (P27033), MAN5_CELJU (B3PF24), MANA_PIRSP (P55296), MANA_STRLI (P51529), MANB_PIRSP (P55297), MANC_PIRSP (P55298), XS20E_NEOPA (B8YG19), XY11A_CELJA (Q59674), XYNA_CELJU (P14768), XYNA_NEOPA (P29127), XYNA_PIRSP (Q12667)» more
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PDB [Detailed view] |
2 PDB
1E8R; 1QLD |