PROSITE entry PS51780
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General information about the entry
Entry name [info] | GW |
Accession [info] | PS51780 |
Entry type [info] | MATRIX |
Date [info] |
01-NOV-2015 CREATED;
01-NOV-2015 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51780 |
Associated ProRule [info] | PRU01116 |
Name and characterization of the entry
Description [info] | GW domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=79; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=79; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4062796; R2=0.0083001; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1578; N_SCORE=15.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=494; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-34; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='S'; M= -15,-100, -18, -12, -23, -54, -41, -38, 12, -66, 40, 32, -4, -5, -60, 58, 35, -38,-103, 29; /M: SY='E'; M= -1,-102, 26, 45, -62, -44, -88, -50, -24, -51, -93, 27, 8, 38, -47, 12, 43, 0,-111, -38; /M: SY='K'; M= -33,-102, -41, 3,-101, -98, -20, -17, 70, -46, -20, -56, -57, 30, -17, 13, 53, -5,-108, -94; /M: SY='N'; M= 21,-101, -13, 8,-104, -58, -43, -38, 31,-100, -39, 44, 41, -82, -19, 30, 35, -18,-111, -50; /M: SY='V'; M= -18, -99, -41, -59, -16, -68, -22, 4, -33, -9, 25, -2, -30, -24, -57, -30, 20, 71, -14, 20; /M: SY='N'; M= -39, -99, 11, -84, -40, -63, 11, -50, 9, -51, -45, 81, -41, 7, -21, 41, 37, -40,-113, -29; /M: SY='Y'; M= -3,-104, -93, -48, -25, 21, -85, -61, 47, 8, 3, -3,-102, 0, -11, -13, -24, -68, -36, 77; /M: SY='T'; M= -22,-101, 19, -68, 5, -99, -14, 11, 23, -30, -51, 22, -44, 20, -17, -11, 56, -16,-100, 39; /M: SY='A'; M= 58,-100, -43, -66, -7, 27, -92, -27, -16, -43, -48, -41,-101, -54, 19, -7, -36, 5, -96, 48; /M: SY='Y'; M= -33,-102, -91, -39, -15, -38, 13, -4, 34, -62, -85, 9, -99, 26, 12, -32, 52, 14, -96, 57; /M: SY='I'; M= -89,-101,-107,-105, -17,-112,-108, 81,-101, -22, -71, 0,-104, -21, -67, -52, 16, 61,-108, -88; /I: I=-22; MD=-55; /M: SY='N'; M= 1,-110, -6, -32,-106, -26, -99, -16, 31, -33, -98, 50,-108, -26, -67, -22, 16, 6,-119, -18; D=-22; /I: I=-22; MI=0; MD=-55; IM=0; DM=-55; /M: SY='N'; M= -38,-107, -1, -44, -75, -4, -13, -34, 1, -49,-100, 69, -51, -25, -3, 28, 28, -74,-118, -22; D=-22; /I: I=-22; DM=-55; /M: SY='R'; M= 9,-103, -8, -23,-104, -43, -40, -51, 49, -47, -93, 26, 10, -1, 53, 11, 15, -21,-109, -96; /M: SY='N'; M= 14,-102, 17, -1,-106, 2, -39, -55, 34, -64, -96, 44, 22, -55, 8, 23, 28, -49,-112, -99; /M: SY='N'; M= -13,-102, 66, -31, -42, 35, -85, -58, -8,-107,-100, 72, -98, -55, -65, 2, 14, -66,-114, -26; /M: SY='G'; M= -23,-104, 14, 6, -21, 49, 39,-105, -24,-104, -97, 47, -99, 12, -91, 26, -12, -53, -18, 32; /M: SY='M'; M= -7,-102, -31, -67, -3, 39, 1, -2, -4, 2, 48, 27, -25, -56, -95, 7, 6, -7,-104, 0; /M: SY='Y'; M= -45, -50,-110,-108, 25,-113, -45, 62,-104, 22, -71,-105,-109,-101,-104, -69, -36, 29, -19, 81; /M: SY='W'; M= -41,-110, -11, -67, -7, -76, -28, -29, -43, -15, -85, -98, -60, -37, -19, -25, 17, -67, 111, 101; /M: SY='N'; M= 0, -98, 17, -34,-102, -39, -44,-100, -3, -81, -56, 67, -43, -39, -42, 54, 54, -73,-114, -16; /M: SY='K'; M= 32,-100, -44, -44, -46, 22, -50, -16, 46, 1, 2, -13, -98, -41, -60, -2, 28, -3,-106, -48; /M: SY='P'; M= -5,-113, -59, -61,-104, -72,-101, -21, -95, -28, -91,-102, 114, -46,-104, -62, -49, 20,-109, -52; /M: SY='W'; M= -24, -31, -29, -33, 8, -79, -5, -46, -64, -39, -86, 9, -17, -54, -66, -19, -93, -2, 105, 101; /M: SY='G'; M= -27,-106, 29, -17, -51, 58, -5, -58, 10, -28, -23, 36, -12, -10, 22, -33, -37, -75,-107, -21; /M: SY='T'; M= -18, -99, 14, -10, -66, -29, -91, -63, 16, -26, 14, 23, -51, 4, -60, -5, 77, -5,-112, -29; /M: SY='S'; M= 8,-101, -56, 18, -68, -65, -47, -28, 31,-100, -41, 36, -7, 10, -32, 52, 27, -26,-107, 4; /I: I=-21; MD=-53; /M: SY='G'; M= -24,-119, -18, -59,-119, 52, -45, -85, -35, -48,-112, 51, 1,-104, -53, -29, -75, -49, -34, -45; D=-21; /I: I=-21; MI=0; MD=-53; IM=0; DM=-53; /M: SY='A'; M= 32, -24, -70, -70, -17, -82,-106, -60, -1, -42, 16, -62, -68, -22, -53, 23, -6, -18, -37, 27; D=-21; /I: I=-21; DM=-53; /M: SY='Q'; M= -38,-114, -99, -31, -49, -64, -27, -5, 43, -24, -54, -17,-107, 66, -47, -14, 22, -26,-115, -62; D=-21; /I: I=-21; DM=-53; /M: SY='Q'; M= -9,-110, -11, -10, -20, -31, -97, -20, 13, -17, -27, -17, -13, 32, 1, 23, -9, -9, -2, -4; D=-21; /I: I=-21; DM=-53; /M: SY='V'; M= -3,-104, -48, -41, -93, -27,-101, 28, 0, 4, -36, 27,-107, -40, -30, -33, 3, 50,-112, -19; D=-21; /I: I=-21; DM=-53; /M: SY='G'; M= 17, -50, 3, -11, -43, 57, -20, -73, 10, -50, -95, -8, -54, -52, -93, 20, 13, -7,-105, 7; /M: SY='S'; M= 3,-101, 27, -37, -64, -58, -33, -94, 21, -3, 13, 38, 18, 14, -48, 41, 18, -42,-110, -23; /M: SY='A'; M= 49, -98, -44, -62, -94, 21, -98, -22, -40, 24, -83, -7, -44, -93, -99, 12, 23, 15,-108, -35; /M: SY='K'; M= -7, -50, -7, -27, -55, -44, -27, -60, 50, -70, -44, 28, 13, -7, -18, 49, 29, -43, -24, -36; /M: SY='N'; M= -21,-105, 37, 0, -60, -21, -51, -50, 37, -40, -96, 45, 12, 19, -30, 23, 9, -33,-112, -33; /M: SY='Y'; M= -43,-109,-102, -51, 51,-108, 6, -52, -14, -13, -39,-100, -39, -21, -94, -50, -28, -41, 4, 112; /M: SY='N'; M= 21,-102, 12, -1, -99, -24, -23, -37, 26, -28, -20, 64,-100, 1, -61, -13, 17, -13,-110, 4; /M: SY='N'; M= -56, -48, 20, -18, -68, 70, -44,-114, -38,-113,-103, 75,-100, 22, -34, -26, -47,-111,-113,-103; /M: SY='Q'; M= -2, -46, 3, -19,-111, -44, -40, -61, 57, -84, -94, -12, -98, 85, 29, -29, -4,-102,-107, -54; /M: SY='T'; M= -10,-102, -9, 17, -40,-101, -9, 10, -1, -25, -26, 9, -31, 21, -30, -12, 58, 3,-107, 14; /M: SY='V'; M= -26,-101,-114,-109, 63, -83,-103, 8,-106, 18, -74,-109,-112,-107,-106,-100, -89, 72, -93, 37; /M: SY='K'; M= -21,-105, -32, 4, -97, -99, 40, -8, 49, -53, -11, 27, -69, 34, -1, -34, 41, -56, 6, 19; /M: SY='V'; M= 13,-101,-112,-107, -62,-110,-112, 63,-105, -17, -39, -67, -44,-104,-108, -37, -85, 77,-112, -92; /M: SY='T'; M= -44,-100, 20, -21, -62, -61, -43, 16, -1, -1, -25, 16, -98, -11, -93, 25, 66, -9, -30, -48; /M: SY='K'; M= -15,-109, -28, 15,-108, -35, -88, -80, 76, -41, -95, -54, -98, 40, 58, -36, -60,-103, -32, -96; /M: SY='Q'; M= -34,-108, -79, 70,-107,-101, -87, -36, 29, -82, -47, -85, -94, 72, -8, 2, 22, -47,-107, -17; /M: SY='A'; M= 60,-100, -9, 0, -96, -40, 7, -40, -18, -57, -20, -6,-100, 22, -25, -20, -10, 18,-105, 26; /M: SY='T'; M= -89,-102, -43, -26, -61, -76, -41, -15, 57, -25, -88, -13, -97, 22, -26, -4, 66, 14,-109, -11; /M: SY='T'; M= -17, -98, 11, -54, -92,-102, -98, 8, -93, -1, -83, 22,-100, -55, -42, -46, 77, 40,-114, -18; /M: SY='N'; M= 2,-104, 32, -14, -69, 35, -88,-107, 22, -76,-100, 63, -21, 8, -34, 17, -8, -77,-113, -58; /M: SY='N'; M= -70,-107, -8, -35,-106, 40, 18, -59, 30, -88, -98, 53,-101, 16, 43, 4, -17, -75, 22, -38; /M: SY='G'; M= 2,-103, -10, -3,-104, 50, -27, -75, 3, -64, -42, 39, -99, 2, -68, 29, 7, -10,-109, -10; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='T'; M= -35, -98, -43, -39, -94, -60, -98, 3, 2, -2, -38, -14, -53, -6, -93, 0, 85, 16,-113, -48; /M: SY='W'; M= -69,-117,-113, -74, 28,-108, -89, -92,-101, -33, -88,-111,-113, -98,-100, -75, -73, -99, 140, 106; /M: SY='Y'; M= -1, -22, -66,-101, -34, -75, -32, -24, -97, 4, -80, 2,-110, -37, -68, -14, -65, 28, -79, 107; /M: SY='Q'; M= -57,-109, -94, -24, -23,-105, 30, -90, 19, 35, -81, -13,-105, 65, 33, -35, -93, -93, -93, 65; /M: SY='I'; M= -26, -49,-110,-110, 48, 38, -48, 60,-106, 18, -12,-101,-107,-105,-108, -96, -50, 23, -99, -83; /M: SY='S'; M= -22,-102, -44, -10,-102, -95, -5, -31, 40, -78, -93, -9, -96, 47, -11, 54, 46, -31,-108, -3; /M: SY='V'; M= -33,-104, 27, -28, 13, -50, -38, 20, -52, 30, -46, 3,-107, -7, -70, -27, -42, 39, -27, 31; /I: I=-28; MD=-70; /M: SY='N'; M= -6,-117, 23, -19, -45, -8,-100, -77, -19, -89, -50, 59, -50, -18, -75, -7, -31, -51,-124, 1; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='N'; M= -42,-106, 33, -90,-113, 49, -41,-114, -17,-117,-106, 93, -46, -40, -94, -19, -60,-113,-120, -53; D=-28; /I: I=-28; DM=-70; /M: SY='G'; M= -90,-108, -18, -21,-111, 54, -18, -40, 51,-110,-101, 41, -59, 10, -85, -21, 25, -63,-113,-103; D=-28; /I: I=-28; DM=-70; /M: SY='Q'; M= -40,-106, -48, 1,-102,-103, -52, -5, 39, -8, -43, 17, 14, 47, -34, -18, 36, 8,-113, -98; D=-28; /I: I=-28; DM=-70; /M: SY='I'; M= -44,-104,-104, -68, -34,-108,-101, 68, -15, 17, -41, -42,-103, 4, -8, -5, 37, 0, 28, -14; /M: SY='G'; M= -22, -43,-100,-107, 2, 89, -99, -51,-102, -49, -95, -88,-103,-100,-107, -85, -64, 9, -98, 35; /M: SY='W'; M=-107,-131,-133,-111, -72,-105,-132,-103,-103, -77,-104,-126,-111, -45,-107,-113,-118, -74, 180, -31; /M: SY='I'; M= -91,-103,-113,-109, -13,-116,-110, 75, -62, 9, 24,-106,-107,-105,-107, -65, -1, 62,-108, -60; /M: SY='D'; M= -38,-108, 90, -17,-112, -38, 15,-111, 35, -59,-104, 50, -42, -13, -57, -17, -87, -75,-122, -99; /M: SY='K'; M= 38,-101, -88, 9, -50, -92, -92, -58, 50, -83, -44, -18, -96, 34, -42, 46, 12, -40, 17, -40; /M: SY='R'; M= -1,-105, -27, -2,-105, -17, 7,-103, 44, -54, -95, 9, -99, 2, 57, 30, -2, -29,-109, -38; /M: SY='A'; M= 65,-101, 63, -35, -60, -13, -92,-104, -33, -83, -99, 15, -99, -53, -95, 22, -61, -73,-112, -10; /M: SY='L'; M= -44,-102,-115,-110, 41, -59,-105, 33,-109, 63, -28,-110,-112,-106,-108, -61, -47, 36,-101, -81; /M: SY='T'; M= -2,-101, -28, -15, -10, -61, -51, -30, 28, -53, -47, 24, -62, 12, 0, 42, 50, -28,-111, -95; /M: SY='T'; M= 7,-103, 5, -15, -48,-101, -96, 29, -12, -2, -24, -12, -22, 18, -70, 14, 35, 8,-108, 5; /M: SY='Y'; M= -47,-108, -17, -18, -8, -54, -44, -5, -18, 7, -25, 8, -13, 26, -12, 21, 5, -4,-103, 40; /M: SY='Y'; M= -14,-110, 2, -6, -35, -32, -95, -30, 7, -10, -95, 19, 16, 9, -8, 13, 10, -33,-110, 20; /M: SY='T'; M= -11,-109, -2, -22, -11, -59, 11, -8, -2, -35, -4, -13, -9, -17, -27, 2, 42, -9,-111, 14; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
Total number of hits | 99 in 16 different sequences |
Number of true positive hits | 99 in 16 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 8 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Feature key [info] | DOMAIN |
Feature description [info] | GW |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
16 sequences
AMI_LISMG (O33983), ATL_STAA1 (A7X0T9), ATL_STAA8 (Q2FZK7), ATL_STAAC (Q5HH31), ATL_STAAM (Q931U5), ATL_STAAN (Q99V41), ATL_STAAR (Q6GI31), ATL_STAAS (Q6GAG0), ATL_STAAU (P0C5Z8), ATL_STAAW (Q8NX96), ATL_STAEP (O33635), ATL_STAEQ (Q5HQB9), ATL_STAES (Q8CPQ1), INLB_LISMG (P0DQD3), INLB_LISMO (P0DQD2), LYTG_BACSU (O32083)» more
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PDB [Detailed view] |
3 PDB
1M9S; 4EPC; 7KWI |