PROSITE entry PS51780

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	GW
Accession [info]	PS51780
Entry type [info]	MATRIX
Date [info]	01-NOV-2015 CREATED; 01-NOV-2015 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC51780
Associated ProRule [info]	PRU01116

Name and characterization of the entry

Description [info]

GW domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=79;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=79;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4062796; R2=0.0083001; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1578; N_SCORE=15.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=494; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-34; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='S';  M= -15,-100, -18, -12, -23, -54, -41, -38,  12, -66,  40,  32,  -4,  -5, -60,  58,  35, -38,-103,  29;
/M: SY='E';  M=  -1,-102,  26,  45, -62, -44, -88, -50, -24, -51, -93,  27,   8,  38, -47,  12,  43,   0,-111, -38;
/M: SY='K';  M= -33,-102, -41,   3,-101, -98, -20, -17,  70, -46, -20, -56, -57,  30, -17,  13,  53,  -5,-108, -94;
/M: SY='N';  M=  21,-101, -13,   8,-104, -58, -43, -38,  31,-100, -39,  44,  41, -82, -19,  30,  35, -18,-111, -50;
/M: SY='V';  M= -18, -99, -41, -59, -16, -68, -22,   4, -33,  -9,  25,  -2, -30, -24, -57, -30,  20,  71, -14,  20;
/M: SY='N';  M= -39, -99,  11, -84, -40, -63,  11, -50,   9, -51, -45,  81, -41,   7, -21,  41,  37, -40,-113, -29;
/M: SY='Y';  M=  -3,-104, -93, -48, -25,  21, -85, -61,  47,   8,   3,  -3,-102,   0, -11, -13, -24, -68, -36,  77;
/M: SY='T';  M= -22,-101,  19, -68,   5, -99, -14,  11,  23, -30, -51,  22, -44,  20, -17, -11,  56, -16,-100,  39;
/M: SY='A';  M=  58,-100, -43, -66,  -7,  27, -92, -27, -16, -43, -48, -41,-101, -54,  19,  -7, -36,   5, -96,  48;
/M: SY='Y';  M= -33,-102, -91, -39, -15, -38,  13,  -4,  34, -62, -85,   9, -99,  26,  12, -32,  52,  14, -96,  57;
/M: SY='I';  M= -89,-101,-107,-105, -17,-112,-108,  81,-101, -22, -71,   0,-104, -21, -67, -52,  16,  61,-108, -88;
/I:         I=-22; MD=-55;
/M: SY='N';  M=   1,-110,  -6, -32,-106, -26, -99, -16,  31, -33, -98,  50,-108, -26, -67, -22,  16,   6,-119, -18; D=-22;
/I:         I=-22; MI=0; MD=-55; IM=0; DM=-55;
/M: SY='N';  M= -38,-107,  -1, -44, -75,  -4, -13, -34,   1, -49,-100,  69, -51, -25,  -3,  28,  28, -74,-118, -22; D=-22;
/I:         I=-22; DM=-55;
/M: SY='R';  M=   9,-103,  -8, -23,-104, -43, -40, -51,  49, -47, -93,  26,  10,  -1,  53,  11,  15, -21,-109, -96;
/M: SY='N';  M=  14,-102,  17,  -1,-106,   2, -39, -55,  34, -64, -96,  44,  22, -55,   8,  23,  28, -49,-112, -99;
/M: SY='N';  M= -13,-102,  66, -31, -42,  35, -85, -58,  -8,-107,-100,  72, -98, -55, -65,   2,  14, -66,-114, -26;
/M: SY='G';  M= -23,-104,  14,   6, -21,  49,  39,-105, -24,-104, -97,  47, -99,  12, -91,  26, -12, -53, -18,  32;
/M: SY='M';  M=  -7,-102, -31, -67,  -3,  39,   1,  -2,  -4,   2,  48,  27, -25, -56, -95,   7,   6,  -7,-104,   0;
/M: SY='Y';  M= -45, -50,-110,-108,  25,-113, -45,  62,-104,  22, -71,-105,-109,-101,-104, -69, -36,  29, -19,  81;
/M: SY='W';  M= -41,-110, -11, -67,  -7, -76, -28, -29, -43, -15, -85, -98, -60, -37, -19, -25,  17, -67, 111, 101;
/M: SY='N';  M=   0, -98,  17, -34,-102, -39, -44,-100,  -3, -81, -56,  67, -43, -39, -42,  54,  54, -73,-114, -16;
/M: SY='K';  M=  32,-100, -44, -44, -46,  22, -50, -16,  46,   1,   2, -13, -98, -41, -60,  -2,  28,  -3,-106, -48;
/M: SY='P';  M=  -5,-113, -59, -61,-104, -72,-101, -21, -95, -28, -91,-102, 114, -46,-104, -62, -49,  20,-109, -52;
/M: SY='W';  M= -24, -31, -29, -33,   8, -79,  -5, -46, -64, -39, -86,   9, -17, -54, -66, -19, -93,  -2, 105, 101;
/M: SY='G';  M= -27,-106,  29, -17, -51,  58,  -5, -58,  10, -28, -23,  36, -12, -10,  22, -33, -37, -75,-107, -21;
/M: SY='T';  M= -18, -99,  14, -10, -66, -29, -91, -63,  16, -26,  14,  23, -51,   4, -60,  -5,  77,  -5,-112, -29;
/M: SY='S';  M=   8,-101, -56,  18, -68, -65, -47, -28,  31,-100, -41,  36,  -7,  10, -32,  52,  27, -26,-107,   4;
/I:         I=-21; MD=-53;
/M: SY='G';  M= -24,-119, -18, -59,-119,  52, -45, -85, -35, -48,-112,  51,   1,-104, -53, -29, -75, -49, -34, -45; D=-21;
/I:         I=-21; MI=0; MD=-53; IM=0; DM=-53;
/M: SY='A';  M=  32, -24, -70, -70, -17, -82,-106, -60,  -1, -42,  16, -62, -68, -22, -53,  23,  -6, -18, -37,  27; D=-21;
/I:         I=-21; DM=-53;
/M: SY='Q';  M= -38,-114, -99, -31, -49, -64, -27,  -5,  43, -24, -54, -17,-107,  66, -47, -14,  22, -26,-115, -62; D=-21;
/I:         I=-21; DM=-53;
/M: SY='Q';  M=  -9,-110, -11, -10, -20, -31, -97, -20,  13, -17, -27, -17, -13,  32,   1,  23,  -9,  -9,  -2,  -4; D=-21;
/I:         I=-21; DM=-53;
/M: SY='V';  M=  -3,-104, -48, -41, -93, -27,-101,  28,   0,   4, -36,  27,-107, -40, -30, -33,   3,  50,-112, -19; D=-21;
/I:         I=-21; DM=-53;
/M: SY='G';  M=  17, -50,   3, -11, -43,  57, -20, -73,  10, -50, -95,  -8, -54, -52, -93,  20,  13,  -7,-105,   7;
/M: SY='S';  M=   3,-101,  27, -37, -64, -58, -33, -94,  21,  -3,  13,  38,  18,  14, -48,  41,  18, -42,-110, -23;
/M: SY='A';  M=  49, -98, -44, -62, -94,  21, -98, -22, -40,  24, -83,  -7, -44, -93, -99,  12,  23,  15,-108, -35;
/M: SY='K';  M=  -7, -50,  -7, -27, -55, -44, -27, -60,  50, -70, -44,  28,  13,  -7, -18,  49,  29, -43, -24, -36;
/M: SY='N';  M= -21,-105,  37,   0, -60, -21, -51, -50,  37, -40, -96,  45,  12,  19, -30,  23,   9, -33,-112, -33;
/M: SY='Y';  M= -43,-109,-102, -51,  51,-108,   6, -52, -14, -13, -39,-100, -39, -21, -94, -50, -28, -41,   4, 112;
/M: SY='N';  M=  21,-102,  12,  -1, -99, -24, -23, -37,  26, -28, -20,  64,-100,   1, -61, -13,  17, -13,-110,   4;
/M: SY='N';  M= -56, -48,  20, -18, -68,  70, -44,-114, -38,-113,-103,  75,-100,  22, -34, -26, -47,-111,-113,-103;
/M: SY='Q';  M=  -2, -46,   3, -19,-111, -44, -40, -61,  57, -84, -94, -12, -98,  85,  29, -29,  -4,-102,-107, -54;
/M: SY='T';  M= -10,-102,  -9,  17, -40,-101,  -9,  10,  -1, -25, -26,   9, -31,  21, -30, -12,  58,   3,-107,  14;
/M: SY='V';  M= -26,-101,-114,-109,  63, -83,-103,   8,-106,  18, -74,-109,-112,-107,-106,-100, -89,  72, -93,  37;
/M: SY='K';  M= -21,-105, -32,   4, -97, -99,  40,  -8,  49, -53, -11,  27, -69,  34,  -1, -34,  41, -56,   6,  19;
/M: SY='V';  M=  13,-101,-112,-107, -62,-110,-112,  63,-105, -17, -39, -67, -44,-104,-108, -37, -85,  77,-112, -92;
/M: SY='T';  M= -44,-100,  20, -21, -62, -61, -43,  16,  -1,  -1, -25,  16, -98, -11, -93,  25,  66,  -9, -30, -48;
/M: SY='K';  M= -15,-109, -28,  15,-108, -35, -88, -80,  76, -41, -95, -54, -98,  40,  58, -36, -60,-103, -32, -96;
/M: SY='Q';  M= -34,-108, -79,  70,-107,-101, -87, -36,  29, -82, -47, -85, -94,  72,  -8,   2,  22, -47,-107, -17;
/M: SY='A';  M=  60,-100,  -9,   0, -96, -40,   7, -40, -18, -57, -20,  -6,-100,  22, -25, -20, -10,  18,-105,  26;
/M: SY='T';  M= -89,-102, -43, -26, -61, -76, -41, -15,  57, -25, -88, -13, -97,  22, -26,  -4,  66,  14,-109, -11;
/M: SY='T';  M= -17, -98,  11, -54, -92,-102, -98,   8, -93,  -1, -83,  22,-100, -55, -42, -46,  77,  40,-114, -18;
/M: SY='N';  M=   2,-104,  32, -14, -69,  35, -88,-107,  22, -76,-100,  63, -21,   8, -34,  17,  -8, -77,-113, -58;
/M: SY='N';  M= -70,-107,  -8, -35,-106,  40,  18, -59,  30, -88, -98,  53,-101,  16,  43,   4, -17, -75,  22, -38;
/M: SY='G';  M=   2,-103, -10,  -3,-104,  50, -27, -75,   3, -64, -42,  39, -99,   2, -68,  29,   7, -10,-109, -10;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='T';  M= -35, -98, -43, -39, -94, -60, -98,   3,   2,  -2, -38, -14, -53,  -6, -93,   0,  85,  16,-113, -48;
/M: SY='W';  M= -69,-117,-113, -74,  28,-108, -89, -92,-101, -33, -88,-111,-113, -98,-100, -75, -73, -99, 140, 106;
/M: SY='Y';  M=  -1, -22, -66,-101, -34, -75, -32, -24, -97,   4, -80,   2,-110, -37, -68, -14, -65,  28, -79, 107;
/M: SY='Q';  M= -57,-109, -94, -24, -23,-105,  30, -90,  19,  35, -81, -13,-105,  65,  33, -35, -93, -93, -93,  65;
/M: SY='I';  M= -26, -49,-110,-110,  48,  38, -48,  60,-106,  18, -12,-101,-107,-105,-108, -96, -50,  23, -99, -83;
/M: SY='S';  M= -22,-102, -44, -10,-102, -95,  -5, -31,  40, -78, -93,  -9, -96,  47, -11,  54,  46, -31,-108,  -3;
/M: SY='V';  M= -33,-104,  27, -28,  13, -50, -38,  20, -52,  30, -46,   3,-107,  -7, -70, -27, -42,  39, -27,  31;
/I:         I=-28; MD=-70;
/M: SY='N';  M=  -6,-117,  23, -19, -45,  -8,-100, -77, -19, -89, -50,  59, -50, -18, -75,  -7, -31, -51,-124,   1; D=-28;
/I:         I=-28; MI=0; MD=-70; IM=0; DM=-70;
/M: SY='N';  M= -42,-106,  33, -90,-113,  49, -41,-114, -17,-117,-106,  93, -46, -40, -94, -19, -60,-113,-120, -53; D=-28;
/I:         I=-28; DM=-70;
/M: SY='G';  M= -90,-108, -18, -21,-111,  54, -18, -40,  51,-110,-101,  41, -59,  10, -85, -21,  25, -63,-113,-103; D=-28;
/I:         I=-28; DM=-70;
/M: SY='Q';  M= -40,-106, -48,   1,-102,-103, -52,  -5,  39,  -8, -43,  17,  14,  47, -34, -18,  36,   8,-113, -98; D=-28;
/I:         I=-28; DM=-70;
/M: SY='I';  M= -44,-104,-104, -68, -34,-108,-101,  68, -15,  17, -41, -42,-103,   4,  -8,  -5,  37,   0,  28, -14;
/M: SY='G';  M= -22, -43,-100,-107,   2,  89, -99, -51,-102, -49, -95, -88,-103,-100,-107, -85, -64,   9, -98,  35;
/M: SY='W';  M=-107,-131,-133,-111, -72,-105,-132,-103,-103, -77,-104,-126,-111, -45,-107,-113,-118, -74, 180, -31;
/M: SY='I';  M= -91,-103,-113,-109, -13,-116,-110,  75, -62,   9,  24,-106,-107,-105,-107, -65,  -1,  62,-108, -60;
/M: SY='D';  M= -38,-108,  90, -17,-112, -38,  15,-111,  35, -59,-104,  50, -42, -13, -57, -17, -87, -75,-122, -99;
/M: SY='K';  M=  38,-101, -88,   9, -50, -92, -92, -58,  50, -83, -44, -18, -96,  34, -42,  46,  12, -40,  17, -40;
/M: SY='R';  M=  -1,-105, -27,  -2,-105, -17,   7,-103,  44, -54, -95,   9, -99,   2,  57,  30,  -2, -29,-109, -38;
/M: SY='A';  M=  65,-101,  63, -35, -60, -13, -92,-104, -33, -83, -99,  15, -99, -53, -95,  22, -61, -73,-112, -10;
/M: SY='L';  M= -44,-102,-115,-110,  41, -59,-105,  33,-109,  63, -28,-110,-112,-106,-108, -61, -47,  36,-101, -81;
/M: SY='T';  M=  -2,-101, -28, -15, -10, -61, -51, -30,  28, -53, -47,  24, -62,  12,   0,  42,  50, -28,-111, -95;
/M: SY='T';  M=   7,-103,   5, -15, -48,-101, -96,  29, -12,  -2, -24, -12, -22,  18, -70,  14,  35,   8,-108,   5;
/M: SY='Y';  M= -47,-108, -17, -18,  -8, -54, -44,  -5, -18,   7, -25,   8, -13,  26, -12,  21,   5,  -4,-103,  40;
/M: SY='Y';  M= -14,-110,   2,  -6, -35, -32, -95, -30,   7, -10, -95,  19,  16,   9,  -8,  13,  10, -33,-110,  20;
/M: SY='T';  M= -11,-109,  -2, -22, -11, -59,  11,  -8,  -2, -35,  -4, -13,  -9, -17, -27,   2,  42,  -9,-111,  14;
/I:         E1=0; IE=-380; DE=-380;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	99 in 16 different sequences
Number of true positive hits	99 in 16 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	8
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	DOMAIN
Feature description [info]	GW
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

16 sequences

AMI_LISMG   (O33983), ATL_STAA1   (A7X0T9), ATL_STAA8   (Q2FZK7),

ATL_STAAC   (Q5HH31), ATL_STAAM   (Q931U5), ATL_STAAN   (Q99V41), 
ATL_STAAR   (Q6GI31), ATL_STAAS   (Q6GAG0), ATL_STAAU   (P0C5Z8), 
ATL_STAAW   (Q8NX96), ATL_STAEP   (O33635), ATL_STAEQ   (Q5HQB9), 
ATL_STAES   (Q8CPQ1), INLB_LISMG  (P0DQD3), INLB_LISMO  (P0DQD2), 
LYTG_BACSU  (O32083)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

3 PDB

1M9S; 4EPC; 7KWI