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Entry: PS51826

General information about the entry

Entry name [info] PSBD
Accession [info] PS51826
Entry type [info] MATRIX
Date [info] 15-FEB-2017 CREATED;
13-FEB-2019 DATA UPDATE;
08-MAY-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC51826
Associated ProRule [info] PRU01170

Name and characterization of the entry

Description [info] Peripheral subunit-binding (PSBD) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=38;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8716874; R2=0.0078783; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3992.8278809; R2=0.7047478; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=969; H_SCORE=4676; N_SCORE=10.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=461; H_SCORE=4318; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-64; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='H';  M= -51,-121, -32,-109,  38,-119,  51,  17,  14,   7, -99,  35, -16,-105,  34, -15,   6, -17,-115,  30;
/M: SY='A';  M=  80,-113,-119,-112, -21,-107,-114, -22,-113,  27,  28,-114, -16, -21,-116,  -8,-102, -22,-118,   2;
/M: SY='S';  M=   3,-112,-108,-107, -37, -50,-110,-109, -21, -18,  36, -97,-112,-102,-110,  83,  69,-104,-128,-111;
/M: SY='P';  M=-114,-139,-114,-103,-134,-116,-117,-121,-110,-132,-118,-121, 134,-114,-123,-111,-106,-127,-127,-131;
/M: SY='S';  M=  50,-114,-114,-110, -42,-107,-112,-101,-110,  26,-101,-107,  16,-106, -20,  66, -14,   9,-122,  -8;
/M: SY='A';  M=  77,-112,-123,-116,-110,-111,-123,  16,-116, -97,   9,-117,-119,-114,-119,-100,-100,  71,-127,-113;
/M: SY='R';  M= -21,-127,-109, -97,-124,-119,-102,-127,  48, -75,-111,-102,-119,   5, 107, -11,-109,-121,-123,-111;
/M: SY='K';  M= -12,-124,-105, -96, -48,-116,-102,-121,  80, -33, -36,  32,-117, -18,  75,-104, -59,-118,-120, -10;
/M: SY='L';  M=-115,-120,-126, -56, -51,-132,  -1,  30,-117,  79, -82,-124,-129,-114,   3,-121,-110, -44,-110,  56;
/M: SY='A';  M=  88,-112,-120,-113,-110,-106,-117,   7,-114,  22,  46,-115,-118,-110,-117, -97,-102, -20,-123,-112;
/M: SY='R';  M=  27,-121, -17,  38,-121, -66,   3, -67,  45, -29, -21,-102,-114, -93,  66,   2, -11, -41,-125,-112;
/M: SY='E';  M=-108,-127,  37,  95,-127, -39, -19, -32,  34,-120,  15, -34,-107,   6, -96, -54,-107,-120,-128,-116;
/M: SY='H';  M= -11,-120,-103,-106,   0, -56,  92,-110,  34,  31,-100,  74,-121, -40, -46,-104,-106,-112,-124,  11;
/M: SY='G';  M= -21,-121,  18,-108,-128,  80, -33,-131,  22,-130,-120,  63,-116,-105,-109,   3,-105,-126,-127,-120;
/M: SY='I';  M=-108,-119,-132,-127, -95,-134,-126,  74,-124,  43,  11,-126,-126,-121,-125,-119,-104,  64,-123, -34;
/M: SY='D';  M= -24,-125,  99,  26,-131,-111,-100,-130, -18,-128,-123,  39, -40, -19,  26,  -9,-103,-125,-139,-117;
/I:         I=-24; MI=0; MD=-61; IM=0; DM=-61;
/M: SY='L';  M=  36,-117,-125,-118, -59,-122,-118,  30, -30,  72, -86,-122,  22,-115,-119, -47,-106, -25,-121,-106;
/M: SY='S';  M=  26,-117,  20,   6,-120, -51,-106,-118,  24, -61,-114,  28,-114, -37,  -4,  70, -40, -37,  29, -29;
/M: SY='Q';  M=  -2,-121,  21,  43,  -2, -22,-103, -37, -29, -12,-108,  31,-114,  69, -60,  24,  -4, -63,-123, -35;
/M: SY='V';  M=-105,-119,-129,-126,-101,   2,-131,  78,-123, -41, -88,-122,-123, -34,-125,-115,-103,  80,-127,-108;
/M: SY='T';  M=  19,-117,-105, -23,-121,-111,  -2, -82,  43, -66,-109,   0,  20,  36, -15,  32,  61, -22,-128,-113;
/M: SY='G';  M=  44,  -9,-113,-117,-128,  91,-118,-129,-115,-128,-118,-102,  30,-113,-122, -62, -49,-121,-123,-124;
/M: SY='T';  M= -36,-111, -35, -28,-119, -59,-111,-114,  -1,-117,-112, -94,-109,-101,-107,  74,  93,-106,-132,-114;
/M: SY='G';  M= -97,-123, -47,-121,-128, 105,-118,-133,-116, -50,-120, -98,-116,-114,-123, -28, -17,-127,-122,-124;
/I:         I=-26; MD=-65;
/M: SY='P';  M= -23,-132,-115, -51,-131, -39,-117, -70,  36,-127,-117, -52, 102,-109,   4,  -7, -30, -12,-130,-126; D=-26;
/I:         I=-26; MI=-65; MD=-65; IM=-65; DM=-65;
/M: SY='N';  M= -41,-124,  33, -31, -48,  41,  53, -53,  22, -71, -23,  63,-118,  -4,  36,-102,-108,-123,-128, -18; D=-26;
/I:         I=-26; DM=-65;
/M: SY='G';  M=-103,-127,  23,-116,-133,  95,-115,-139,-113,-135,-125,  30,-119, -28, -27,-100,-115,-133,-128,-126; D=-26;
/I:         I=-26; DM=-65;
/M: SY='R';  M=-113,-129,-115, -46,-120,-127,-107, -23, -46,-114,-108,-109,-124,  -8, 108,-110, -34,  30,-127,-112;
/M: SY='I';  M=-111,-122,-135,-130, -10,-137,-131,  87,-127,  25, -86,-128,-127,-125,-129,-122,-107,  54,-124,-105;
/M: SY='T';  M=-108,-117,-119,-116,-105,-127,-117, -14,-108,  48, -21,-111,-120,-112,  34,-103,  82,  15,-129,-109;
/M: SY='K';  M= -24,-127,-107, -50,-126,-120,   3, -28, 100,-122,-112,-100,-115, -46,  48,-107,-108, -52,-123,-113;
/M: SY='E';  M=  20, -42,  21,  81,-130,  13,-107,-128,  10,-125,-119,-102,-111,  32,-102,  -7,-107, -75,-128, -51;
/M: SY='D';  M=-117,-131, 123, -81,-137,-114,   5,-136,-104,-133,-132, -85,-117,-103,-113,-105,-107,-133,-153,-119;
/M: SY='V';  M=  -6,-118,-132,-127,-102,-132,-132,  60,-125,   0, -89,-126,-126,-124,-127,-116,-103,  85,-131,-109;
/M: SY='D';  M=-113,-124,  58,  56,-111,-125,-109, -58, -26,  55, -99,-108,-119,  21,-110, -52, -54, -19,-129,-112;
/M: SY='A';  M=  60,-118, -70,  16,-125, -44,-109,-119,  30, -44,-112,  41,-116,   7,   7,  19, -30, -69,-128,-118;
/M: SY='Y';  M=  32,-121,-116, -18,  56,-118,  46,-107, -22, -26,-103,-113,-124,-110,-112,   3, -12, -33,-100,  87;
/M: SY='Q';  M=   8,-121, -59, -53,-107, -59,-117,  36, -11,  39,  -3,-117, -41,  49, -26, -45, -50,  35,-125,-109;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_04 which contains 560'118 sequence entries.


Total number of hits 91 in 91 different sequences
Number of true positive hits 91 in 91 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] Peripheral subunit-binding (PSBD)
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
91 sequences

ACOC_BACSU  (O31550    ), BKDC_MYCTU  (O06159    ), ODB2_ARATH  (Q9M7Z1    ), 
ODB2_BACSU  (P37942    ), ODB2_BOVIN  (P11181    ), ODB2_CAEEL  (Q23571    ), 
ODB2_HUMAN  (P11182    ), ODB2_MOUSE  (P53395    ), ODB2_PSEAE  (Q9I1M0    ), 
ODB2_PSEPU  (P09062    ), ODO2_AZOVI  (P20708    ), ODO2_BACSU  (P16263    ), 
ODO2_BARQU  (Q6FYD4    ), ODO2_BARVB  (Q8GCY1    ), ODO2_BUCBP  (Q89AJ6    ), 
ODO2_CUPNH  (P52993    ), ODO2_ECO57  (P0AFG7    ), ODO2_ECOLI  (P0AFG6    ), 
ODO2_HAEIN  (P45302    ), ODO2_PSEAE  (Q9I3D2    ), ODO2_RICBR  (Q1RHI5    ), 
ODO2_RICCN  (Q92J43    ), ODO2_RICFE  (Q4UKI7    ), ODO2_RICPR  (Q9ZDY4    ), 
ODO2_RICTY  (Q68XI8    ), ODO2_STAA3  (Q2FH26    ), ODO2_STAA8  (Q2FYM2    ), 
ODO2_STAAB  (Q2YY06    ), ODO2_STAAC  (Q5HG07    ), ODO2_STAAM  (Q99U75    ), 
ODO2_STAAN  (Q7A5N4    ), ODO2_STAAR  (Q6GGZ6    ), ODO2_STAAS  (Q6G9E9    ), 
ODO2_STAAW  (Q8NWR7    ), ODO2_STAEQ  (Q5HPC7    ), ODO2_STAES  (Q8CSL9    ), 
ODO2_STAHJ  (Q4L6C3    ), ODO2_STAS1  (Q49XM4    ), ODP21_ARATH (Q0WQF7    ), 
ODP22_ARATH (Q8RWN9    ), ODP23_ARATH (Q5M729    ), ODP24_ARATH (Q9SQI8    ), 
ODP25_ARATH (Q9C8P0    ), ODP2_ACHLA  (P35489    ), ODP2_AZOVI  (P10802    ), 
ODP2_BACSU  (P21883    ), ODP2_BUCAI  (P57302    ), ODP2_BUCAP  (Q8K9T8    ), 
ODP2_BUCBP  (Q89AQ9    ), ODP2_CAEEL  (Q19749    ), ODP2_CORGL  (Q8NNJ2    ), 
ODP2_CUPNH  (Q59098    ), ODP2_DICDI  (P36413    ), ODP2_ECOLI  (P06959    ), 
ODP2_GEOSE  (P11961    ), ODP2_HAEIN  (P45118    ), ODP2_HUMAN  (P10515    ), 
ODP2_LEIXX  (Q6ABX9    ), ODP2_MOUSE  (Q8BMF4    ), ODP2_MYCBO  (P65634    ), 
ODP2_MYCCT  (Q49110    ), ODP2_MYCTO  (P9WIS6    ), ODP2_MYCTU  (P9WIS7    ), 
ODP2_NEUCR  (P20285    ), ODP2_PSEAE  (Q59638    ), ODP2_RAT    (P08461    ), 
ODP2_RHIME  (Q9R9N3    ), ODP2_RICBR  (Q1RJT3    ), ODP2_RICCN  (Q92HK7    ), 
ODP2_RICFE  (Q4ULG1    ), ODP2_RICPR  (Q9ZD20    ), ODP2_RICTY  (Q68WK6    ), 
ODP2_SCHPO  (O59816    ), ODP2_STAAC  (Q5HGY9    ), ODP2_STAAM  (P65635    ), 
ODP2_STAAN  (P65636    ), ODP2_STAAR  (Q6GHZ0    ), ODP2_STAAS  (Q6GAB9    ), 
ODP2_STAAU  (Q59821    ), ODP2_STAAW  (Q8NX76    ), ODP2_STAEQ  (Q5HQ74    ), 
ODP2_STAES  (Q8CT13    ), ODP2_YEAST  (P12695    ), ODP2_ZYMMO  (O66119    ), 
ODPX_BOVIN  (P22439    ), ODPX_HUMAN  (O00330    ), ODPX_MESAU  (P86238    ), 
ODPX_MOUSE  (Q8BKZ9    ), ODPX_SCHPO  (O94709    ), ODPX_YEAST  (P16451    ), 
Y1564_DICDI (Q86AD5    )
» more

PDB
[Detailed view]
25 PDB

1BAL; 1BBL; 1EBD; 1W3D; 1W4E; 1W4F; 1W4G; 1W4H; 1W85; 1W88; 1ZWV; 1ZY8; 2BTG; 2BTH; 2COO; 2CYU; 2F5Z; 2F60; 2PDD; 2PDE; 2WXC; 3DUF; 3DV0; 3DVA; 3RNM
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