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PROSITE entry PS51841


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51841
Entry name [info] LTD
Accession [info] PS51841
Entry type [info] MATRIX
Date [info] 25-OCT-2017 CREATED;
25-OCT-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51841
Associated ProRule [info] PRU01187

Name and characterization of the entry

Description [info] Lamin-tail (LTD) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=121;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=121;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.7145427; R2=0.0058888; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1323; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=983; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-44; D=-150; I=-5; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 45 in 45 different sequences
Number of true positive hits 45 in 45 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] LTD
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
45 sequences

AV71_ACAVI  (Q17107), IFA1_CAEEL  (P90901), IFA2_CAEEL  (O02365), 
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PDB
[Detailed view]
14 PDB

1IFR; 1IVT; 1UFG; 2KPW; 2LLL; 3GEF; 3JT0; 3UMN; 6GHD; 6RPR; 7CRG; 7DTG;
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