 |
|
| Entry: PS51884 |
General information about the entry
| Entry name [info] | CHAPLIN |
| Accession [info] | PS51884 |
| Entry type [info] | MATRIX |
| Date [info] |
10-APR-2019 CREATED;
10-APR-2019 DATA UPDATE; 12-OCT-2022 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51884 |
| Associated ProRule [info] | PRU01232 |
Name and characterization of the entry
| Description [info] | Chaplin domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=41; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=37; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5298569; R2=0.0080471; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1426; N_SCORE=14.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=494; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-34; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='S'; M=-17,-69, 37,-55,-74, 15,-59,-67,-57,-33,-66, 26,-17, -8,-32, 73, -4, -6,-84,-68; /M: SY='P'; M= -3,-78, 2,-10,-32, 50, 43,-77,-28,-78,-69, 21, 74,-59,-27,-10,-59,-43,-80,-69; /M: SY='G'; M=-28,-73,-24,-70,-79, 90,-69,-80,-66,-80,-72,-49,-67,-63,-73, 32, 2,-29,-77,-74; /M: SY='V'; M= 12,-68,-29,-73,-15,-78,-78, 37,-73, 21,-42,-73,-76,-72,-75,-63, 4, 73,-80,-59; /M: SY='L'; M= 37,-67,-76,-71,-54, 9,-72, 6,-71, 53,-42,-70,-75,-68,-73,-21,-12, 32,-76,-61; /M: SY='S'; M= 30, 15,-13,-59,-76, 21,-62,-74,-60,-76,-69,-18,-65,-53,-65, 87,-21,-65,-81,-69; /M: SY='G'; M=-19,-76,-21,-73,-83,101,-70,-89,-69,-85,-75,-50,-68,-67,-76,-49,-67,-82,-74,-77; /M: SY='N'; M=-24,-68, 24,-54,-75,-53,-46,-73,-50,-44,-68,115,-71,-52,-58,-45, 11,-74,-94,-71; /M: SY='Q'; M= 8,-74, -1, -9,-74,-67,-57,-56,-49,-36,-57, 15, -6, 90, -1,-27, 10, 33,-79,-64; /M: SY='V'; M= 20,-66,-79,-74,-54,-77,-79, 19,-73, 17,-42,-74,-76,-72,-75,-32,-20, 82,-82,-61; /M: SY='Q'; M= -7,-76, 30, -5,-75,-31,-54, -1, -1,-66,-59, 39,-68, 89,-28,-15,-56, 7,-78,-19; /M: SY='V'; M= 48,-67,-76,-71, 10, -1,-75, 23,-70, 2,-12,-69,-74,-69,-73,-16,-54, 58,-75,-59; /M: SY='P'; M= 2,-87, -4, -9,-85,-66,-68,-74,-61,-82,-70,-68,119,-63,-72,-29,-58,-76,-80,-81; /M: SY='I'; M= 14,-71,-21,-74,-53,-80,-80, 73,-74, 1,-41,-73,-75,-72,-77,-64,-20, 59,-79,-60; /M: SY='H'; M=-30,-74, 72,-24,-37,-32, 82,-46,-55,-75,-67, 56,-68,-10,-59, 9, 17,-74,-93,-59; /I: I=-30; MD=-77; /M: SY='V'; M= 38,-68,-79,-74, -3,-74,-78, 40,-73, 20,-44,-73,-76,-72,-75,-61, -3, 59,-77,-59; D=-30; /I: I=-30; MI=-77; IM=-77; DM=-77; /M: SY='P'; M= 5,-87,-24, 6,-85,-41,-67,-74,-60,-81,-70,-68,117,-12,-71,-60,-59,-76,-79,-80; /M: SY='V'; M= 15,-69,-77,-70,-57,-77,-78, 40,-32, -8,-44,-71, -1, -3,-71,-61, 1, 75,-81,-62; /M: SY='N'; M=-62,-72, 49, 8,-77,-57, 7,-77,-49,-80,-69,101,-69, 33,-56,-18,-18,-77,-89,-15; /M: SY='V'; M= 14,-68,-77,-73,-21,-36,-78, 30,-72, 7,-44,-23,-13,-72,-75,-62,-10, 76,-81,-61; /M: SY='C'; M=-58,144,-76,-76,-70,-74,-77,-71,-72,-67,-67,-64,-86,-77,-34, 8, 0,-14,-97,-78; /M: SY='G'; M=-50,-76,-14,-72,-82, 98,-68,-89,-67,-86,-75, 13,-68,-65,-75,-20,-65,-83,-76,-77; /M: SY='N'; M=-62,-70, 41,-53,-70,-59,-50,-31,-53, 0,-60,100,-73, 20,-60,-24,-19, 0,-90,-67; /M: SY='S'; M= 54,-65,-61,-59,-73, -8,-11,-65,-59,-69,-63,-19,-19, 0,-64, 62, 39,-14,-81,-67; /M: SY='V'; M= 21,-68,-80,-75,-16, -1,-79, 37,-73, 14,-43,-73,-76,-73,-76,-62,-55, 72,-78,-60; /M: SY='S'; M= 34,-69, 26,-56,-76, 39, 7,-75, -1,-53,-68, 36,-67,-55,-33, 44, 7,-68,-82,-69; /M: SY='V'; M= 27,-67,-78,-74, 4,-22,-77, 20,-72, 20,-43,-25,-77,-72,-74,-62,-54, 73,-78,-58; /M: SY='V'; M= -3,-70,-32,-74,-15, 6,-77, 51,-74, 29,-42,-71,-25,-72,-76,-64,-16, 55,-77,-59; /M: SY='G'; M= 31,-71,-16,-67,-79, 82,-68,-36,-66,-78,-70,-51,-67,-62,-72, 28,-15,-70,-76,-74; /M: SY='A'; M= 34,-68, -4,-40, -2, 11,-69, 18,-67, 17,-51,-62,-71,-64,-71, 25, -1, 26,-74, -7; /M: SY='L'; M= 36,-68,-68,-65, -6,-14, 24,-50,-64, 51,-10, 10,-74,-12,-18, 21,-25,-30,-75,-57; /M: SY='N'; M=-13, -3, 42,-26,-75,-15, 24,-17,-10,-73,-66, 78,-69, -2,-58, 34, -2,-27,-89,-67; /M: SY='P'; M= 42, -5, 1,-57,-77, 10,-13,-66,-61,-72,-65,-17, 72, -2,-68, 18, 15, -5,-81,-72; /M: SY='A'; M= 65,-66, -6, 7,-74, 8,-65,-62,-29,-68,-63, 18,-23,-57,-64, -7, 29, 6,-80,-70; /M: SY='C'; M= 12, 77,-68, 4, 62, 11,-67,-58,-40, -1, -9,-19,-75,-67,-70, 7,-24,-14,-66,-14; /M: SY='G'; M= 16, 22, 41,-11,-78, 70,-65,-41,-61,-75,-69, 2,-68,-19,-22,-50, -6,-16,-81,-73; /M: SY='N'; M=-16, -8, 14,-11,-77, 18,-54,-74, 12,-77,-68, 86,-67,-29,-57, -3, 44,-70,-87,-70; /M: SY='G'; M= 17, 13,-62, -9,-71, 40, 15, -8,-13,-66,-61,-54,-68,-58, 9, 32, 30, 16,-80,-67; /M: SY='C'; M= 15,121,-70,-70,-71, 10, -7,-38,-35,-53,-64,-24,-20,-70,-73, 4, 20,-14,-89,-73; /M: SY='V'; M= 33, -4, 7, 19,-70, 26,-68,-10,-16,-38,-59,-57,-67,-24,-42, 2, 22, 34,-81,-68; /M: SY='N'; M= 29, 2, 15,-29,-73, 10,-59,-36,-29,-69,-63, 72, 5,-32,-64,-22, 25, 14,-86,-70; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 11 in 8 different sequences |
| Number of true positive hits | 11 in 8 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Feature key [info] | DOMAIN |
| Feature description [info] | Chaplin |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
8 sequences
CHPA_STRCO (Q8CJY7 ), CHPB_STRCO (Q9X7U2 ), CHPC_STRCO (Q9AD93 ), CHPD_STRCO (Q9L1J9 ), CHPE_STRCO (Q9X9Z2 ), CHPF_STRCO (Q9KYG7 ), CHPG_STRCO (Q9KYH3 ), CHPH_STRCO (Q9AD92 )» more
|
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission