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Entry: PS51932

General information about the entry

Entry name [info] BMV
Accession [info] PS51932
Entry type [info] MATRIX
Date [info] 07-OCT-2020 CREATED;
07-OCT-2020 DATA UPDATE;
07-OCT-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC51932
Associated ProRule [info] PRU01280

Name and characterization of the entry

Description [info] Bacterial microcompartment vertex (BMV) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=83;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=78;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5402834; R2=0.0058944; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1181; N_SCORE=9.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=672; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-28; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='M';  M= -61, -69, -83, -73, -51, -75, -54, -35, -66, -29, 145, -70, -38, -58, -64, -71, -60, -34, -74, -50;
/M: SY='Q';  M= -65, -78, -48, -28,  18, -76,  17,  40,  29,  -7, -36, -19, -72,  55,  35, -61, -27, -24, -14,  33;
/M: SY='L';  M= -51, -71, -82, -76, -12, -84, -34,  52, -54,  64,  20, -76, -51, -53, -48, -71,  -9,  19, -73, -38;
/M: SY='G';  M=  67,  21, -67, -67, -76,  67, -19, -73, -66, -72, -12, -57, -68, -63, -71, -34, -59, -50,  -9, -39;
/M: SY='R';  M= -62, -77, -48,   7, -72, -74, -25, -17,  58, -41, -30, -54, -68,  20,  75, -57,  17,  -8, -76, -63;
/M: SY='V';  M= -53, -67, -83, -78, -53, -85, -85,  30, -75, -29, -41, -78, -78, -77, -77, -67, -51,  98, -86, -61;
/M: SY='I';  M= -47, -25, -28, -25, -55, -51, -51,  73, -41, -12, -15, -68, -73, -39,  -5, -55,  18,  51, -79, -60;
/M: SY='G';  M= -39, -77, -19, -59, -83,  99, -69, -90, -38, -85, -75, -50, -68, -65, -27, -35, -67, -83, -74, -77;
/M: SY='T';  M= -40, -20, -22, -43, -72, -63,  35, -71,  21, -61, -63,  44, -15,  28,  33,  31,  56, -60, -82, -24;
/M: SY='V';  M=  10, -38, -81, -75, -53, -80, -80,  46, -74,  13, -11, -75, -76, -73, -76, -64, -15,  77, -81, -60;
/M: SY='W';  M= -57, -71, -77, -72, -54, -77, -81,  -8, -67, -50, -51, -43, -74, -28, -28, -43,  47,  75, 110, -53;
/M: SY='S';  M=  61,  49, -65, -62, -29, -39, -66, -62, -63,   0, -18, -40, -69, -58, -67,  64, -25, -45, -78, -66;
/M: SY='T';  M= -20, -63, -12, -59, -69, -42, -66, -61, -58, -66, -62, -47, -27, -60, -65,  31, 103, -34, -87, -66;
/M: SY='R';  M= -12, -56, -50, -30, -40, -72,  27,  -1,  34, -39, -55, -38, -45,  48,  49,  -9,  -1,  35, -78, -48;
/M: SY='K';  M= -11,  -2, -57, -28, -77, -69, -29, -51,  90, -60, -32, -38, -66,   7,  46, -26, -39, -71, -74, -65;
/M: SY='H';  M= -18, -20,  42,   8, -63, -68,  98, -37, -58,  -5, -40,  23, -37, -31, -60,  -2, -22,   0, -83,  18;
/M: SY='P';  M=   4, -80,  37,  49, -50, -54,   8, -76,  -7, -78, -69, -32,  81,   0, -34,  -7, -15, -74, -81, -71;
/M: SY='S';  M=  15, -27,  -2,   4, -45,  29, -42, -56,  10, -59, -67,   1, -35, -12, -16,  58,  11, -56, -12, -37;
/M: SY='L';  M= -67, -71, -83, -76,  31, -84, -11,  -6, -75,  74,  41, -79, -82, -70, -73, -75, -63, -13, -62,  35;
/M: SY='E';  M=  11, -74,  -2,  39, -74, -20,   0, -21,  25, -52, -29,  13,  12,  24,  13,  -5,   1,   4, -80, -67;
/M: SY='G';  M= -39, -75, -36, -60, -79,  88,  34, -85, -65, -73, -34,  20, -14, -41, -57,   7, -44, -80, -77, -42;
/M: SY='W';  M=  15,  11,  -4, -35, -26,  16,  29, -35,  24,   4, -16, -31, -29,  21,   8, -21, -16, -15,  30,   8;
/M: SY='K';  M= -18, -75, -58, -47, -76, -69, -29, -74,  83, -74, -64, -32, -14, -26,  59, -15,  16, -35, -76, -65;
/M: SY='L';  M= -67, -71, -85, -77,  40, -84, -69,  13, -76,  74,  30, -80, -82, -42, -74, -75, -42, -26,  42, -14;
/M: SY='L';  M= -51, -22, -80, -70, -46, -82, -65, -24, -22,  72,  52, -76, -80,  -3,  -2, -60, -61,  19, -72, -14;
/M: SY='I';  M= -47,  -4, -79, -13, -36, -84, -74,  54, -71,  44,  28, -76, -77, -69, -29, -70, -29,  51, -77, -57;
/M: SY='V';  M=   4,  23, -80, -75, -55, -48, -80,  33, -73,   0,   8, -74, -76, -73, -75, -63,  -9,  80, -83, -62;
/M: SY='Q';  M= -22, -79,  -6,  48, -80, -69, -23, -59,  22, -58, -61,  -8, -65,  90,  24, -40, -20, -10, -77, -65;
/M: SY='P';  M= -42, -52,   7, -25, -29, -52, -66, -24, -27, -12,  20, -44,  97, -38,   8, -45,  -2,  -8, -78, -46;
/M: SY='L';  M= -49,   2,  -7, -32, -32, -63, -70,  36, -60,  58,   6, -73, -46, -16, -38, -57, -20,  29, -36, -19;
/I:         I=-16; MD=-40;
/M: SY='D';  M= -37, -24,  68, -11, -79,   2, -37, -63, -37, -29, -27,  52, -73, -60, -35,  -4,  19, -58, -93, -29; D=-16;
/I:         I=-16; MI=0; MD=-40; IM=0; DM=-40;
/M: SY='E';  M=  14, -47,  11,  25, -79, -30, -15, -36,  -8, -26,  15,  -9,  16,   3, -28, -16, -20, -17,  -8, -50; D=-16;
/I:         I=-16; DM=-40;
/M: SY='D';  M= -20, -83,  39,  15, -56,  -5, -33, -83,  19, -53, -74,  31, -21,  19,  22, -11, -14, -70, -88, -56; D=-16;
/I:         I=-16; DM=-40;
/M: SY='G';  M= -34, -82,  -3,  -9, -37,  55, -15, -54, -14,  -9, -21,   3, -24,   1,   7, -26, -32, -41, -82, -43; D=-16;
/I:         I=-16; DM=-40;
/M: SY='Q';  M= -12, -81, -12,  43, -39, -16, -61, -59,  17, -50, -33,  13, -25,  48,   3,   7, -32, -27, -82, -34; D=-16;
/I:         I=-16; DM=-40;
/M: SY='P';  M=  -4, -34,   0,  20, -57,   1, -15, -36, -15, -39, -32,  -1,  75, -48, -25,  -4, -33, -35, -83, -35; D=-16;
/I:         I=-16; DM=-40;
/M: SY='D';  M=   8, -73,  41, -11, -70,   4, -28,  -5,  21, -13, -10, -16, -10,  -2,   5,   6,  18,  -5, -80, -47;
/M: SY='G';  M=   1, -75,  -5,   6, -80,  80, -65, -81,  -9, -72, -71, -22, -13, -31,  -7,  -1, -22, -51, -77, -74;
/M: SY='D';  M= -16, -76,  47,  46, -17,   0, -23, -76,  15, -65, -27,  13,  14,  13,   7,   6,   0, -64, -80, -43;
/M: SY='P';  M=  -9, -13, -12,  10, -23, -59, -32, -15, -28,  -9, -19, -37,  68,   0, -24,   0,  33,   2, -74,  12;
/M: SY='L';  M= -14, -72, -39, -13,  27, -78, -15,  33, -44,  37,  26, -47, -47,   7, -19, -37, -13,  24, -10,   2;
/M: SY='V';  M= -25, -69, -82, -77, -51, -83, -82,  54, -75,  16, -39, -77, -77, -75, -77, -40, -34,  80, -81, -59;
/M: SY='A';  M=  83,  30, -71, -64, -70, -31, -72, -41, -65, -60, -18, -64, -30, -63, -70, -21, -41,  34, -79, -70;
/M: SY='V';  M=  14, -15, -78, -74,   8, -76, -72,  35, -71,  19,   5, -72, -76, -70, -73, -37,  13,  53,  24,  28;
/M: SY='D';  M= -67, -11, 117, -22, -87, -65, -54, -85, -55, -84, -83, -36, -67, -54, -64, -55, -31, -82,-103, -71;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='P';  M=  12,  -6,  -4,   5, -48, -35, -19, -15, -27, -14,  -2, -10,  42,  12,   2,  15,  39, -26, -18, -17;
/M: SY='V';  M=   4, -10, -80, -75, -19, -17, -75,  29, -73,  39,  12, -74, -77, -47, -54, -28, -56,  61,   4, -58;
/M: SY='G';  M= -20, -76,  -5, -66, -82,  92, -42, -86, -54, -83, -40,  -1, -68,  20, -21, -30, -65, -81, -76, -74;
/M: SY='A';  M=  83,  27, -66, -26, -73, -44, -37, -42, -62, -65, -60, -61, -67, -59, -35,  15, -11,   4, -79, -70;
/M: SY='G';  M=  -9, -76,  -9, -66, -81,  89, -67, -85,  -8, -82, -72, -38, -15, -34,  -6,  -4, -45, -62, -75, -75;
/M: SY='I';  M= -18, -75,  -6,  34, -55, -20, -36,  40, -33, -27, -16, -34,  39, -17,  12, -46, -10,  37, -80, -65;
/M: SY='G';  M= -51, -76,   9, -30, -82,  94,  13, -88, -65, -84, -74, -41, -67, -63, -46, -20, -13, -81, -77, -74;
/M: SY='D';  M= -29, -35,  84,  65, -82, -41, -10, -75, -36, -75, -72, -46, -63,   9, -58,  -5, -27, -10, -89, -69;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='W';  M= -47,  -5, -53, -36, -36, -48,   6,  32, -15,  30,  15, -67, -74, -17,  24, -51,  23,  16,  62,  17;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='V';  M= -45, -11, -83, -78, -53, -84, -84,  35, -75, -33, -20, -78, -78, -77, -77, -67, -52,  94, -84, -23;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='L';  M=   3,  -3, -81, -76,  15, -37, -31,  34, -74,  58,  47, -76, -78, -69, -74, -69, -47,  -4,   9,  11;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='V';  M= -46,   8, -54, -74,  22, -80, -73,  40, -55,  17, -13, -72, -76, -39, -73, -26,  18,  57,  29,  20;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='T';  M=  29,  -7, -14,   8, -67, -39, -67,   8, -60, -48, -38, -19, -66, -41, -55,  35,  58,  28, -83, -66;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='E';  M=  -4, -52,  22,  46, -58,   5, -38, -49, -24, -45, -65, -37, -64,  29,   9,  28,  42, -41, -13, -29;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='G';  M=  -2, -75,   4, -51, -79,  91, -67, -85, -66, -83, -73,  -4, -52, -63, -60,  -1, -63, -79,  -8, -22;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='S';  M=  20, -69, -22,  -8, -56,  17, -14, -73,  -9, -50, -47,   8,  -7, -51,  15,  68,  -4, -67, -78, -26;
/M: SY='A';  M=  51, -68, -14,  40, -73,  -5,  -5, -68, -43, -62, -65, -19, -31, -30, -33,  45,   1, -13,  -6, -31;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='A';  M=  83, -11, -69, -62, -70, -31, -70,  -8, -62, -36, -57, -62, -68, -60, -13,  -1, -18,   9, -77, -69;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='R';  M=  29, -75, -42, -37, -51, -24, -11, -57, -14, -42, -23, -36, -72,  13,  85,   2, -23, -23, -76, -32;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='Q';  M=  13, -41,  10,  16,  -4, -48,  16, -14,  -6, -25,  27,   0, -69,  55,  16, -12, -29, -14,  25,  -4;
/M: SY='P';  M=  40, -70,  -7, -42, -62, -20, -33,  11, -65,   4,  40, -51,  42, -63, -70,   2,  13,   9,   7, -18;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='F';  M=  -1,  -9, -46,   0,  59, -45,  -4, -26, -38,  27,  32, -55,   4, -25, -26, -35,   2,   4, -64,   9;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='G';  M=  -6, -17,  13, -13,  -4,  52,  31, -56,  17, -31, -65,  -2, -20,   7,  -9,  -9, -23, -44, -75,  -7; D=-38;
/I:         I=-38; DM=-97;
/M: SY='P';  M= -37,  -7,  40,   7, -42,  -2,  29, -48,  -8, -32, -14,  21,  42,   0,   4,  -3,  23, -24, -83, -51;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='D';  M=  -4, -77,  35,  29, -74, -17, -29, -73,  33, -66, -67,   2,  32,   2,  16,  -2,   8, -29,   7,  -2; D=-26;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='N';  M= -18, -74,  41,  -9,   4, -28,  31, -45,   1, -39,   8,  54,   5,  13, -15,   7,   8, -68, -79,  -6; D=-26;
/I:         I=-26; DM=-67;
/M: SY='V';  M=  25, -19, -32, -44, -42, -48, -67,   6,  18, -16, -10, -37,  -1, -31, -13,  25,  28,  32, -78, -23; D=-26;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='P';  M=  -9, -45, -40, -57, -80, -67, -69, -35, -63, -44, -31, -70, 116, -65, -46, -15, -24, -29, -79, -78;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='V';  M=   7, -29, -33, -73, -35, -52, -78,  57, -72,  -9, -44, -69, -74, -71, -75,  -3,   7,  66, -80, -45;
/M: SY='D';  M= -38, -14, 101, -32, -81, -58, -15, -56, -40, -52, -44, -12, -69, -15,  48, -57, -59, -39, -93, -67;
/M: SY='A';  M=  65,  -4, -44, -40, -19, -59, -20, -41, -63,   1,  22, -10, -70, -48, -50,  14,   7, -10,  62, -24;
/M: SY='A';  M=  42,  17, -43, -67, -27, -36, -66,  -1, -66,   3,   1, -63, -71, -33, -69,  12,  32,  31, -20,  35;
/M: SY='I';  M= -18, -10, -77, -54, -54, -65, -79,  80, -72, -20, -41,  -5, -74, -72, -51, -37,  -8,  55, -79, -60;
/M: SY='V';  M=  21,   4, -49, -55, -34, -55, -77,  53, -72,   8,   4, -71, -75, -45, -74, -21, -17,  61, -79, -60;
/M: SY='G';  M=  39,  25, -27, -70, -79,  85, -70, -53, -68, -63, -70, -53, -69, -65, -74, -15, -62, -49, -76, -75;
/M: SY='I';  M= -46, -74, -83, -80,  -8, -85, -80,  92, -76,  13, -37, -74, -75, -44, -79, -18, -40,  22, -72, -28;
/M: SY='V';  M= -32, -71, -47, -34, -52, -61, -80,  67, -74,  10,  -6, -75, -34, -51, -77, -68, -55,  70, -80, -59;
/M: SY='D';  M= -48, -80, 114,   9, -87, -49, -54, -84, -31, -83, -81, -37, -66, -53, -62, -39, -57, -59,-100, -70;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_05 which contains 563'552 sequence entries.


Total number of hits 8 in 8 different sequences
Number of true positive hits 8 in 8 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] BMV
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
8 sequences

CCML_GLOVI  (Q7NIT8    ), CCML_NOSS1  (Q8YYI2    ), CCML_SYNE7  (Q03512    ), 
CCML_SYNY3  (P72759    ), CCML_THEEB  (Q8DKB4    ), EUTN_ECOL6  (P0AEJ9    ), 
EUTN_ECOLI  (P0AEJ8    ), EUTN_SALTY  (P41792    )
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PDB
[Detailed view]
7 PDB

2HD3; 2QW7; 2Z9H; 4JVZ; 4JW0; 4N8F; 4N8X

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission