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Entry: PS52005

General information about the entry

Entry name [info] CBM56
Accession [info] PS52005
Entry type [info] MATRIX
Date [info] 14-DEC-2022 CREATED;
14-DEC-2022 DATA UPDATE;
14-DEC-2022 INFO UPDATE.
PROSITE Doc. [info] PDOC52005
Associated ProRule [info] PRU01349

Name and characterization of the entry

Description [info] CBM56 (carbohydrate binding type-56) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=89;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=84;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2503402; R2=0.0073436; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=2009; N_SCORE=17.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=579; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-28; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='M';  M= -40, -72,  30, -58, -67, -21, -18, -11, -60, -37,  58,  46,  42, -21, -65,  38,  -9,   9,   5, -23;
/M: SY='G';  M=  41,  -4, -18, -22, -75,  62, -67, -38, -63, -27, -65, -54,  -2, -19, -69,  32,  -8, -44, -77, -71;
/M: SY='T';  M= -13,  17,  43, -29, -76,  22, -61, -68, -56, -72, -67,  24,   8,  24, -13,  26,  45,  -7, -85, -69;
/M: SY='S';  M=  32, -69, -61,  -7, -17,  31, -66, -32, -61, -32, -63, -55,  34, -17, -67,  46,  40, -38, -77, -67;
/I:         I=-31; MI=0; MD=-79; IM=0; DM=-79;
/M: SY='D';  M=  10, -73,  75, -23, -79,  30, -60, -75, -59, -50, -71,  14,  18, -57, -66,  28,  10, -41, -87, -71;
/M: SY='F';  M=  19, -17, -25, -19,  70, -44,  -6, -30, -67,  -4, -53, -30,  27, -66, -69,  -6, -59, -12, -54,  61;
/M: SY='T';  M=   4, -11, -58, -13, -29, -19, -63, -59,  -5, -27, -59,  15,  -1,   7, -61,  24,  72,   3, -79, -18;
/M: SY='Q';  M=  35, -71,  16, -12, -71, -30,  50, -68, -32, -37,  -2,   8, -29,  59, -57,  34,  -4, -40, -78,  -1;
/M: SY='G';  M=   1,   0, -63, -68, -75,  76, -67, -73, -63, -28, -13, -16,  -5, -62, -18,  28,  14, -38, -77, -72;
/M: SY='V';  M=  36,  27,  -8, -64, -14, -41, -68,  -9, -65, -25,   5,  -6,  -7, -15, -69,  10,  14,  50, -78, -12;
/I:         I=-28; MD=-70;
/M: SY='C';  M= -16,  33, -34,  -7, -36, -49, -17, -18, -77, -45, -79, -23, -27, -78, -13,  -5,  31, -42, -97, -16; D=-28;
/I:         I=-28; MI=0; MD=-70; IM=0; DM=-70;
/M: SY='G';  M=  28,  43,   8,   6, -34,  51, -64, -74,  -1, -73, -67,  -2, -67,   8, -37,  -6,  24, -39, -79, -70;
/M: SY='I';  M=   5,   0, -30, -29, -56,  -7,  19,  43, -67,  12, -47, -22,   3, -20, -71, -59,  22,  35, -75,  13;
/M: SY='S';  M=  -4, -69,  12,  22, -74,   4, -59, -33, -54, -49, -64,  33, -65,  34, -60,  51,  40, -15, -83, -68;
/M: SY='Q';  M=  18, -73,  29,  13, -77,  25,  -6, -16, -55, -46, -64,   4,  13,  52, -61,  21,  12, -43, -80, -68;
/M: SY='T';  M= -25, -70,  12,   7, -70,  17, -11, -27, -25, -16, -60,  45, -22,   7, -62,  19,  49,   3, -84, -67;
/M: SY='S';  M=  -3, -70,   1,  35, -18,  28, -59, -76, -55, -76, -69,  24, -17,  11, -61,  65,   3, -70, -80, -67;
/M: SY='A';  M=  49, -68,  -1, -63, -65,  19, -69,  -7, -65,  18, -53, -60,   1, -19, -70,  14,   9,  14, -78, -66;
/M: SY='T';  M= -19, -68,   5, -57, -26, -13,  -3, -33,   2, -14, -58,  19, -67,  13, -12,  33,  59,  14, -82, -63;
/M: SY='F';  M=  -8,  -7, -70, -30,  46, -70, -69,  36, -65,   9, -11, -62, -71, -14, -39,  39,  36, -17,  44, -50;
/M: SY='W';  M=  21, -73, -77, -21,  27, -73, -71, -13, -68,  17,  -7, -73, -75,  -6, -70, -40,  -1,  33, 107,  26;
/M: SY='F';  M= -29, -73, -72, -25,  87, -77, -11,  -4,  -1, -30, -52, -65, -75,  45,   4, -62,   4,   9,   6, -37;
/M: SY='F';  M=  24, -70, -10, -34,  60, -68, -64, -26,  15, -14, -55,  -6,  13, -18, -62, -28,  39,  -3, -65,   2;
/I:         I=-26; MD=-67;
/M: SY='P';  M= -23,  -6, -35, -61,  -3, -16,  16, -66, -59, -69, -63,  -4,  70, -61,   2,  22,  41, -25, -69,  46; D=-26;
/I:         I=-26; MD=-67;
/M: SY='V';  M=  10,   2, -11, -10, -63,  -9, -66, -30, -36, -12, -13,  11, -33, -62, -68,  27,  28,  44, -80,   3; D=-26;
/I:         I=-26; MD=-67;
/M: SY='N';  M=   6, -12, -21, -63, -72, -38,  24, -30, -61, -38, -64,  61,  -3,   8, -67,  13,  36,  -1,  50, -66; D=-26;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='T';  M=  -1, -71,  16, -16, -77,  17,  -1, -72, -29, -75, -68,  28,  -2,   1, -24,  47,  47, -36, -85, -69; D=-26;
/I:         I=-26; DM=-67;
/M: SY='A';  M=  60, -67, -61,  -7, -75,   6, -67, -69, -22, -39, -65, -22, -15, -57, -65,  42,  39, -60, -81, -71; D=-26;
/I:         I=-26; DM=-67;
/M: SY='D';  M=  -2, -72,  49, -51, -78,  17,  22, -75, -54, -55, -68,  -9, -22,  25,  15,  42,  38, -69, -85, -67; D=-26;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='W';  M= -42, -86, -87, -77,  49, -76, -71,  15, -37, -56, -59, -81, -79, -70, -71, -36, -73, -63, 147,  69;
/M: SY='V';  M=  61,  27, -76, -70, -62, -67, -78,  -4, -70, -49, -50, -71, -74, -69, -73, -54, -52,  76, -83, -66;
/I:         I=-45; MD=-115;
/M: SY='D';  M= -32, -79, 107, -37, -80, -67, -57,   3, -20, -75, -74, -40, -68, -57, -64, -55,  11, -70, -95, -24; D=-45;
/I:         I=-45; MI=-115; IM=-115; DM=-115;
/M: SY='V';  M=  -9, -69, -83, -78,   5, -83, -81,  58, -76,  21, -39, -77, -78, -75, -77, -68, -55,  72, -77, -56;
/M: SY='H';  M= -69, -81, -52, -53, -68, -70, 147, -86, -58, -69, -54,  -5, -70, -47, -52, -58, -67, -85,-103, -37;
/M: SY='Y';  M= -71, -81, -71, -74,  12, -78, -38, -56, -66, -35, -49, -72, -84, -62, -63, -67, -66, -61, -28, 132;
/M: SY='K';  M= -57, -72, -59, -51, -72, -68, -59, -17,  49, -43, -60, -17, -66,  41,  49,  31,  49, -11, -78, -64;
/M: SY='V';  M= -57, -69, -82, -75, -52, -54, -79,  44, -32,  26, -39, -76, -78, -32, -35, -68, -55,  80, -81, -59;
/M: SY='N';  M= -19, -67,  -8, -18, -76, -52, -46, -73, -49, -80, -69, 116, -33, -51, -58, -25,   3, -49, -94, -71;
/M: SY='G';  M= -26, -73,  13, -64, -81,  80, -60, -84, -61, -84, -74,  65, -34, -60, -69,  11, -58, -80, -81, -75;
/M: SY='G';  M=   1, -76, -63, -36, -82,  95, -68, -85, -65, -57, -71, -51, -68,  14, -35, -49, -66, -79, -74, -75;
/M: SY='G';  M=  40, -70,  -9, -32, -74,  55, -65, -30, -60, -69, -63,  33, -34,  -1, -24,  -7, -11,  19, -80, -71;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='Q';  M= -60, -82, -56, -13, -19, -69, -49, -69, -18, -13,  -2, -52, -68, 124, -42, -51, -62, -72, -71, -58;
/M: SY='Q';  M= -33, -77, -61,   1, -65, -72, -54, -54, -50,  37,  28, -28, -71, 102, -25, -56, -24, -27, -72, -24;
/M: SY='N';  M= -61, -67, -37, -57, -76, -25,  10, -76, -49, -82, -69, 120, -72, -50, -57, -19, -13, -77, -95, -70;
/M: SY='V';  M= -59, -71, -21, -74, -17, -83,  -2,  29, -73,  14, -42, -74, -79, -71, -73, -68, -56,  75, -66,  61;
/M: SY='R';  M=  11, -77, -63, -54, -23, -70, -54, -73, -33, -47,   1, -28, -73,   9,  99, -11,  -4, -68, -74, -19;
/M: SY='M';  M= -30, -69, -82, -72, -51, -74, -55, -36, -66, -16, 142, -69, -70, -58, -64, -68, -12, -43, -74, -51;
/M: SY='T';  M=   3, -66, -59, -59, -30, -38, -63, -11, -57, -26,  -2,  17, -65,  35, -32,  30,  78, -10, -81, -63;
/M: SY='W';  M=  13, -75, -14,   0, -27, -67,  -3,  -2,  14, -37, -57,  25, -13,  29,   1,   4, -57,   8,  53,  49;
/M: SY='N';  M=  -5, -71,  -5,  10, -72, -18, -55, -13, -24, -23, -61,  74, -32,  43, -28,  22,   5, -10, -83, -67;
/M: SY='G';  M=  40, -69,  -6, -63, -79,  65, -61, -78, -60, -79, -70,  63, -68, -58, -67,  20, -54, -71, -80, -73;
/M: SY='G';  M=   6, -71,   6, -21, -78,  72, -63, -78, -61, -78,  -6,  32, -18, -59, -68,  29,  12, -72, -80, -73;
/I:         I=-29; MI=0; MD=-75; IM=0; DM=-75;
/M: SY='R';  M= -57, -73, -24,   4, -74,   1, -10, -66,  -4, -69,   3,  34, -68,  33,  60,  14,  34,   0, -81, -65;
/M: SY='W';  M= -69, -81, -68, -71,  36, -69,  15, -34, -64, -63, -63,  62, -35, -65, -68, -65, -29, -20, 139,  47;
/M: SY='E';  M= -16, -73, -24,  73, -27, -69,  16, -71, -31, -70, -65, -19, -61,  23, -17,   0,  60, -37,   1, -64;
/M: SY='Y';  M= -38, -77, -26, -62, -14, -74,  50, -55, -32, -11, -51,   3, -77,  35, -29, -60, -13,   5, -47, 104;
/M: SY='T';  M= -56, -68, -10,   0, -69, -67, -61, -58, -53, -14, -59,  31,  19,  17,   7,   3,  79,   1, -84, -66;
/M: SY='V';  M= -21, -70, -78, -76, -25,  -7, -78,  55, -71,   4, -42, -23, -76, -72, -22, -64,  -7,  70, -79, -60;
/M: SY='T';  M=  -8, -70,  12, -30, -72,  15,   6, -68, -57,  -8, -63,  33,  32, -16, -25,  43,  47, -64, -83, -67;
/M: SY='N';  M= -11, -71, -12, -64, -72,  61, -60, -33, -61, -14,  -4,  67,  -4, -60, -68,  18, -29, -17, -81, -70;
/M: SY='L';  M=   7, -70, -77, -33, -25, -42, -68, -39, -70,  74,   1, -75,  16, -66, -27, -17, -60, -11, -73, -57;
/M: SY='S';  M=  23, -67, -58, -28, -73,   9, -62, -29,  26, -70, -64,  15, -66,  -4, -56,  69,  -5,   3, -80, -67;
/M: SY='A';  M=  45, -68,  23, -12, -75,  27, -63, -36, -59, -70, -65,  13, -32,  13, -64,  41,   0,   0, -81, -69;
/M: SY='G';  M=  -7, -74,   8, -65, -26,  84,   2, -75, -65, -76, -69,   5, -69,  10, -70, -50, -12,  -7, -77, -70;
/M: SY='D';  M= -24, -75,  92,   5, -79, -65, -58, -32, -31, -74, -71, -15, -11,   0, -62,   3,  39, -20, -92, -69;
/M: SY='V';  M= -22, -69, -69, -32, -59, -75, -70,  24, -60,   3, -47,  -1, -72,   0,  20, -19,  41,  63, -82, -62;
/I:         I=-38; MD=-97;
/M: SY='V';  M= -68, -81, -93, -89, -60, -96, -91,  58, -86,  -7, -49, -87, -87, -85, -87, -78, -27,  65, -88, -13; D=-38;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='D';  M= -35, -73,  59,  29,  -1, -65, -56, -68, -51, -70, -66,  17, -67,   0,  21,  39,  21,  -6, -78,   7;
/M: SY='Y';  M= -71, -80, -71, -73,  36, -76,   4, -33, -66, -53, -51, -17, -82, -63, -64, -34, -65, -61,  48, 123;
/M: SY='W';  M= -61, -74, -68, -67,  68, -68,  -1, -25, -59, -58, -59,   4, -75, -27,  18,  48,  -5, -62,  86,  53;
/M: SY='F';  M= -71,  -1, -81, -79, 109, -81, -64, -49, -74, -25, -51, -72, -82, -81, -73, -67,  25, -28, -44,  41;
/M: SY='T';  M= -55, -65,   1, -61, -60, -69, -66, -10, -59, -61, -59, -50, -62, -62, -66, -13, 103, -29,  46,  25;
/M: SY='Y';  M= -68, -80,  -6, -71, -27, -41, -45,  17, -38, -12, -48, -70, -81, -63, -65, -66, -63,  -5, -37, 120;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='W';  M= -23, -78, -24,  46, -27, -45, -58,  11, -53, -12,  -9,  45,  -1,  66, -58, -56, -26, -31,  78, -59;
/M: SY='N';  M=  -7, -73,  36, -24, -12, -64, -14, -25,  37, -45, -64,  47,  17,  38,  -7,  -1,  26, -66, -80, -64;
/M: SY='G';  M=   7,  22,  16, -12, -77,  52, -60, -74, -22, -50, -68,  52, -26, -12, -28,  12,  15, -40, -82, -72;
/M: SY='G';  M=  -3, -71, -24, -36, -77,  76, -63, -77, -33, -50, -69,  48, -67, -60, -68,  12,  17, -45, -79, -73;
/I:         I=-45; MD=-115;
/M: SY='C';  M= -11,  45, -70, -67, -25,  29, -69, -52,  -6,  18, -54, -29,  39, -11, -68, -13,  10,  27, -77, -10; D=-45;
/I:         I=-45; MI=-115; IM=-115; DM=-115;
/M: SY='A';  M=  69, -67, -64, -57, -75,  24, -65, -23, -58, -66, -60,  -9, -67,  58, -62, -45,  10,  -2, -77, -69;
/M: SY='Y';  M= -34,  14, -30,   5, -39, -75,   6, -54, -12, -14,  -5, -19, -76,  -4,   0, -38,  -9,  14, -49, 100;
/M: SY='D';  M=  -3, -77, 103,   9, -83, -65, -56, -75, -54, -77, -74, -41, -66,  26, -61, -52,  10, -20, -94, -69;
/M: SY='T';  M= -17, -64,  -7, -25, -68, -64, -64, -28, -57, -65, -61,  -9, -62, -58, -30,  42,  93, -16, -84, -25;
/M: SY='D';  M=  35, -73,  41,  36, -80,  13, -61, -75, -54, -76, -69, -19,  36,   6, -20,  21,  15, -68, -82, -71;
/M: SY='W';  M= -15, -79, -71, -33, -57, -18,  18, -69, -62, -44, -66, -28,  28, -62, -25,   7,  53, -70, 138, -46;
/M: SY='Y';  M=  18, -73, -64,  12,  28, -36, -56, -57, -32,   7, -54, -63,  17,  21, -24,  12,  -7, -16, -58,  68;
/M: SY='T';  M= -17, -69, -57, -53, -25, -26,   4, -68, -51, -69, -62,  10, -64,  63,   3,  43,  73, -63,  13, -61;
/M: SY='Y';  M=   2, -77, -69, -67,  51, -72,  58, -60, -29, -40, -53, -64, -77,   4, -61, -22, -12, -62,  45, 100;
/M: SY='T';  M= -24, -66, -61, -61, -63, -68,  -3,  -9, -56, -60, -57, -17, -65,  -9,  10,  22,  87,  22, -81,   3;
/M: SY='H';  M= -64,  -4, -71, -68,  55, -76,  71, -26, -40, -11,  -4, -64, -26, -30, -12,  -1, -33,  32, -58,  66;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2022_05 which contains 568'744 sequence entries.


Total number of hits 1
Number of true positive hits 1
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info]
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] CBM56
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
1 sequence

ENG1_HALH5  (Q9KG76    )

			
		
PDB
[Detailed view]
1 PDB

5T7A

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