PROSITE entry PS60011
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | PLANT_C6_AMP |
| Accession [info] | PS60011 |
| Entry type [info] | PATTERN |
| Date [info] |
01-MAR-2005 CREATED;
01-OCT-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC60011 |
Name and characterization of the entry
| Description [info] | Plant C6 type antimicrobial peptide (AMP) signature. |
| Pattern [info] |
C-[IV]-x(2,4)-[RG]-C-x(2,6)-[GP]-x-C-C-S-x(2,4)-C-x-{C}-x(4,8)-C.
|
Numerical results [info]
| Total number of hits | 9 in 9 different sequences |
| Number of true positive hits | 9 in 9 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Site [info] | disulfide at position 1 |
| Site [info] | disulfide at position 5 |
| Site [info] | disulfide at position 9 |
| Site [info] | disulfide at position 10 |
| Site [info] | disulfide at position 13 |
| Site [info] | disulfide at position 15 |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
9 sequences
ALO1_ACRLO (P83651), ALO2_ACRLO (P83652), ALO3_ACRLO (P83653), AMP1_MESCR (O81338), AMP1_MIRJA (P25403), AMP2_MIRJA (P25404), AMP_AMACA (P27275), AMP_AMARE (Q5I2B2), PAFP_PHYAM (P81418)» more
|
| PDB [Detailed view] |
5 PDB
1DKC; 1MMC; 1Q3J; 1ZUV; 1ZWU |