PROSITE logo

PROSITE entry PS60030


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] BACTERIOCIN_IIA
Accession [info] PS60030
Entry type [info] PATTERN
Date [info] 01-MAR-2006 CREATED;
01-MAR-2006 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC60030

Name and characterization of the entry

Description [info] Bacteriocin class IIa family signature.
Pattern [info] 
Y-G-N-G-[VL]-x-C-x(4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 23 sequences 

BACT_LACSP  (P86291), BAVM_LATSK  (P80493), BCN80_NIACI (P86394), 

CBB1_CARML  (P38579), CBB2_CARML  (P38580), DIV35_CARDV (P84962), 
ETCHF_ENTFC (P86183), ETCM_ENTFC  (P85876), ETCP_ENTFC  (O30434), 
HJM79_ENTHR (Q0Z8B6), LCCA_LEUGE  (P34034), LCCB_LEUCA  (Q53446), 
LCCC_LEUME  (P81053), LCNM_LACLL  (P83002), MTCY_LEUME  (P38577), 
MUTI_ENTMU  (P80925), PIS1_CARML  (P80569), PPA1_PEDAC  (P29430), 
SAKA_LATCU  (P0A311), SAKA_LATSK  (P0A310), SAKP_LATSK  (P35618), 
UBAA_STRUB  (A9Q0M7), WSNA_WEIPA  (B3A0N4)
» more

UniProtKB/Swiss-Prot
False negative sequences		 5 sequences 

BACT_STRMG  (P86386), BCN02_PAEPO (P86393), BCN37_PAEPO (P86395), 

CURVA_LATCU (P84886), ETC50_ENTFC (P85148)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

BAVA_LATSK  (P80953)


				
	

	

		PDB
[Detailed view]		
		
			14 PDB
			


			1CW5; 1CW6; 1OG7; 1OHM; 1OHN; 1RY3; 2A2B; 2LEU; 2N4K; 3LEU; 5UKZ; 7VLY; 
			
				7XNO; 7XTG
			
			

			» more