PROSITE logo

PROSITE entry PS60030


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] BACTERIOCIN_IIA
Accession [info] PS60030
Entry type [info] PATTERN
Date [info] 01-MAR-2006 CREATED;
01-MAR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC60030

Name and characterization of the entry

Description [info] Bacteriocin class IIa family signature.
Pattern [info] 
Y-G-N-G-[VL]-x-C-x(4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 23 sequences 

BACT_LACSP  (P86291), BAVM_LATSK  (P80493), BCN80_NIACI (P86394), 

CBB1_CARML  (P38579), CBB2_CARML  (P38580), DIV35_CARDV (P84962), 
ETCHF_ENTFC (P86183), ETCM_ENTFC  (P85876), ETCP_ENTFC  (O30434), 
HJM79_ENTHR (Q0Z8B6), LCCA_LEUGE  (P34034), LCCB_LEUCA  (Q53446), 
LCCC_LEUME  (P81053), LCNM_LACLL  (P83002), MTCY_LEUME  (P38577), 
MUTI_ENTMU  (P80925), PIS1_CARML  (P80569), PPA1_PEDAC  (P29430), 
SAKA_LATCU  (P0A311), SAKA_LATSK  (P0A310), SAKP_LATSK  (P35618), 
UBAA_STRUB  (A9Q0M7), WSNA_WEIPA  (B3A0N4)
» more

UniProtKB/Swiss-Prot
False negative sequences		 5 sequences 

BACT_STRMG  (P86386), BCN02_PAEPO (P86393), BCN37_PAEPO (P86395), 

CURVA_LATCU (P84886), ETC50_ENTFC (P85148)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

BAVA_LATSK  (P80953)


				
	

	

		PDB
[Detailed view]		
		
			14 PDB
			


			1CW5; 1CW6; 1OG7; 1OHM; 1OHN; 1RY3; 2A2B; 2LEU; 2N4K; 3LEU; 5UKZ; 7VLY; 
			
				7XNO; 7XTG
			
			

			» more