PROSITE entry PS00025
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General information about the entry
| Entry name [info] | P_TREFOIL_1 |
| Accession [info] | PS00025 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00024 |
Name and characterization of the entry
| Description [info] | P-type 'Trefoil' domain signature. |
| Pattern [info] |
[KRH]-x(2)-C-x-[FYPSTV]-x(3,4)-[ST]-x(3)-C-x(4)-C-C-[FYWH]. |
Numerical results [info]
| Total number of hits | 59 in 43 different sequences |
| Number of true positive hits | 59 in 43 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 88.06 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 6 |
| Site [info] | disulfide at position 3 |
| Site [info] | disulfide at position 9 |
| Site [info] | disulfide at position 11 |
| Site [info] | disulfide at position 12 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
43 sequences
LYAG_BOVIN (Q9MYM4), LYAG_HUMAN (P10253), LYAG_MOUSE (P70699), LYAG_PONAB (Q5R7A9), LYAG_RAT(Q6P7A9), MGA_HUMAN (O43451), MLRP1_ACRMI (B3EWZ5), MLRP2_ACRMI (B3EWZ6), MUA1_XENLA (P10667), MUC1_XENLA (Q05049), SUIS_HUMAN (P14410), SUIS_RABIT (P07768), SUIS_RAT(P23739), SUIS_SUNMU (O62653), TFF1_CANLF (Q863T4), TFF1_HUMAN (P04155), TFF1_MOUSE (Q08423), TFF1_RAT(Q63467), TFF2_CANLF (Q863J2), TFF2_HUMAN (Q03403), TFF2_MOUSE (Q03404), TFF2_PIG(P01359), TFF2_RAT(Q09030), TFF3_BOVIN (A8YXX7), TFF3_CANLF (Q863B4), TFF3_FELCA (B4X8D9), TFF3_HUMAN (Q07654), TFF3_MOUSE (Q62395), TFF3_PIG(Q29183), TFF3_RAT(Q03191), XP1_XENLA (Q00222), XP2_XENLA (P17437), XP4_XENLA (Q00223), ZP1_HUMAN (P60852), ZP1_MOUSE (Q62005), ZP1_RABIT (I6M4H4), ZP1_RAT (O54766), ZP4_BOVIN (Q9BH11), ZP4_FELCA (P48834), ZP4_HUMAN (Q12836), ZP4_PIG (Q07287), ZP4_RABIT (Q00193), ZP4_RAT (Q8CH34)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
FMR1N_HUMAN (Q8N0W7), FMR1N_MOUSE (Q80ZA7), FYV1_DICDI (B0G126), MGAL_HUMAN (Q2M2H8), TM190_BOVIN (E1BJD3), TM190_CANLF (E2R0A5), TM190_HUMAN (Q8WZ59), TM190_MOUSE (Q9D2E9)» more |
| PDB [Detailed view] |
31 PDB
1E9T; 1HI7; 1PCP; 1PE3; 1POS; 1PS2; 1PSP; 2PSP; 2QLY; 2QMJ; 3CTT; 3L4T; 3L4U; 3L4V; 3L4W; 3L4X; 3L4Y; 3L4Z; 3LPO; 3LPP; 5KZW; 5KZX; 5NN3; 5NN4; 5NN5; 5NN6; 5NN8; 6V1C; 6V1D; 7P2Z; 7P32 » more |