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PROSITE entry PS00115


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PURL: https://purl.expasy.org/prosite/signature/PS00115

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General information about the entry

Entry name [info] RNA_POL_II_REPEAT
Accession [info] PS00115
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00106

Name and characterization of the entry

Description [info] Eukaryotic RNA polymerase II heptapeptide repeat.
Pattern [info] 
Y-[ST]-P-[ST]-S-P-[STANK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 372 in 18 different sequences
Number of true positive hits 369 in 15 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.19 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 43
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 15 sequences 

NRPB1_ARATH (P18616), RPB1_BOVIN  (G3MZY8), RPB1_CAEBR  (P35074), 

RPB1_CAEEL  (P16356), RPB1_CRIGR  (P11414), RPB1_DICDI  (P35084), 
RPB1_DROME  (P04052), RPB1_ENCCU  (Q8SSC4), RPB1_EREGS  (Q75A34), 
RPB1_HUMAN  (P24928), RPB1_MOUSE  (P08775), RPB1_PICGU  (A5DCV3), 
RPB1_PLAFD  (P14248), RPB1_SCHPO  (P36594), RPB1_YEAST  (P04050)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

CDS3_ARATH  (Q1PE48), DNLJ_THEAB  (B7IDX6), RFX3_XENTR  (Q0V9K5)


				
	

	

		PDB
[Detailed view]		
		
			274 PDB
			


			pdb_00001i3q; pdb_00001i50; pdb_00001i6h; pdb_00001k83; pdb_00001nik; pdb_00001nt9; pdb_00001pqv; pdb_00001r5u; pdb_00001r9s; pdb_00001r9t; pdb_00001sfo; pdb_00001twa; 
			
				pdb_00001twc; pdb_00001twf; pdb_00001twg; pdb_00001twh; pdb_00001wcm; pdb_00001y1v; pdb_00001y1w; pdb_00001y1y; pdb_00001y77; pdb_00002b63; pdb_00002b8k; pdb_00002e2h; 
				pdb_00002e2i; pdb_00002e2j; pdb_00002ghq; pdb_00002ght; pdb_00002ja5; pdb_00002ja6; pdb_00002ja7; pdb_00002ja8; pdb_00002l0i; pdb_00002lo6; pdb_00002nvq; pdb_00002nvt; 
				pdb_00002nvx; pdb_00002nvy; pdb_00002nvz; pdb_00002r7z; pdb_00002r92; pdb_00002r93; pdb_00002vum; pdb_00002yu9; pdb_00003cqz; pdb_00003d9k; pdb_00003d9l; pdb_00003d9m; 
				pdb_00003d9n; pdb_00003d9o; pdb_00003d9p; pdb_00003fki; pdb_00003gtg; pdb_00003gtj; pdb_00003gtk; pdb_00003gtl; pdb_00003gtm; pdb_00003gto; pdb_00003gtp; pdb_00003gtq; 
				pdb_00003h0g; pdb_00003h3v; pdb_00003hou; pdb_00003hov; pdb_00003how; pdb_00003hox; pdb_00003hoy; pdb_00003hoz; pdb_00003i4m; pdb_00003i4n; pdb_00003k1f; pdb_00003k7a; 
				pdb_00003m3y; pdb_00003m4o; pdb_00003po2; pdb_00003po3; pdb_00003qt1; pdb_00003rzd; pdb_00003rzo; pdb_00003s14; pdb_00003s15; pdb_00003s16; pdb_00003s17; pdb_00003s1m; 
				pdb_00003s1n; pdb_00003s1q; pdb_00003s1r; pdb_00003s2d; pdb_00003s2h; pdb_00004a3b; pdb_00004a3c; pdb_00004a3d; pdb_00004a3e; pdb_00004a3f; pdb_00004a3g; pdb_00004a3i; 
				pdb_00004a3j; pdb_00004a3k; pdb_00004a3l; pdb_00004a3m; pdb_00004a93; pdb_00004bbr; pdb_00004bbs; pdb_00004bxx; pdb_00004bxz; pdb_00004by1; pdb_00004by7; pdb_00004gwq; 
				pdb_00004jxt; pdb_00004pz6; pdb_00004v1m; pdb_00004v1n; pdb_00004v1o; pdb_00004x67; pdb_00004x6a; pdb_00004y52; pdb_00004y7n; pdb_00005c3e; pdb_00005c44; pdb_00005c4a; 
				pdb_00005c4j; pdb_00005c4x; pdb_00005flm; pdb_00005fmf; pdb_00005fyw; pdb_00005fz5; pdb_00005ip7; pdb_00005ip9; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; 
				pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005lvf; pdb_00005m3h; pdb_00005m3j; pdb_00005m9d; pdb_00005oik; pdb_00005oqj; pdb_00005oqm; pdb_00005ot2; 
				pdb_00005sva; pdb_00005u0s; pdb_00005u5q; pdb_00005vvr; pdb_00005vvs; pdb_00005w4u; pdb_00005w51; pdb_00006blo; pdb_00006blp; pdb_00006bm2; pdb_00006bm4; pdb_00006bqf; 
				pdb_00006drd; pdb_00006f5p; pdb_00006gyk; pdb_00006gyl; pdb_00006gym; pdb_00006i84; pdb_00006ic8; pdb_00006ic9; pdb_00006npw; pdb_00006o6c; pdb_00006o9l; pdb_00006q5y; 
				pdb_00006upx; pdb_00006upy; pdb_00006upz; pdb_00006uq0; pdb_00006uq1; pdb_00006uq2; pdb_00006uq3; pdb_00006xkb; pdb_00006xre; pdb_00007b0y; pdb_00007egb; pdb_00007egc; 
				pdb_00007ked; pdb_00007kee; pdb_00007kef; pdb_00007lbm; pdb_00007mei; pdb_00007mk9; pdb_00007mka; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nkx; 
				pdb_00007nky; pdb_00007o4i; pdb_00007o4j; pdb_00007o4k; pdb_00007o4l; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007okx; pdb_00007oky; pdb_00007oo3; pdb_00007oob; 
				pdb_00007oop; pdb_00007opc; pdb_00007opd; pdb_00007rim; pdb_00007rip; pdb_00007riq; pdb_00007riw; pdb_00007rix; pdb_00007riy; pdb_00007ui9; pdb_00007uif; pdb_00007uig; 
				pdb_00007uio; pdb_00007ycx; pdb_00007z1k; pdb_00007z42; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; pdb_00008cen; pdb_00008ceo; pdb_00008jch; pdb_00008k5p; pdb_00008oeu; 
				pdb_00008oev; pdb_00008oew; pdb_00008of0; pdb_00008p4b; pdb_00008p4c; pdb_00008p4d; pdb_00008p4e; pdb_00008p4f; pdb_00008pm0; pdb_00008pnp; pdb_00008pnq; pdb_00008qsz; 
				pdb_00008r3k; pdb_00008r3l; pdb_00008r60; pdb_00008r65; pdb_00008ram; pdb_00008rap; pdb_00008tug; pdb_00008tvp; pdb_00008tvq; pdb_00008tvs; pdb_00008tvv; pdb_00008tvw; 
				pdb_00008tvx; pdb_00008tvy; pdb_00008u9r; pdb_00008u9x; pdb_00008ukq; pdb_00008ukr; pdb_00008uks; pdb_00008ukt; pdb_00008uku; pdb_00008umh; pdb_00008umi; pdb_00008uoq; 
				pdb_00008uot; pdb_00009b9l; pdb_00009bvt; pdb_00009bw0; pdb_00009ehz; pdb_00009ei1; pdb_00009ei2; pdb_00009ei3; pdb_00009ei4; pdb_00009ja1
			
			

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