PROSITE entry PS00310
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General information about the entry
| Entry name [info] | LAMP_1 |
| Accession [info] | PS00310 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00280 |
Name and characterization of the entry
| Description [info] | Lysosome-associated membrane glycoproteins duplicated domain signature. |
| Pattern [info] |
[STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y. |
Numerical results [info]
| Total number of hits | 28 in 23 different sequences |
| Number of true positive hits | 23 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 82.14 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Site [info] | disulfide at position 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
LAMP1_BOVIN (Q05204), LAMP1_CHICK (P05300), LAMP1_CRIGR (P49129), LAMP1_HUMAN (P11279), LAMP1_MOUSE (P11438), LAMP1_RAT (P14562), LAMP2_CHICK (Q90617), LAMP2_CRIGR (P49130), LAMP2_HUMAN (P13473), LAMP2_MOUSE (P17047), LAMP2_RAT (P17046), LAMP5_BOVIN (A4FV27), LAMP5_DANRE (A8WFR0), LAMP5_HUMAN (Q9UJQ1), LAMP5_MOUSE (Q9D387), LAMP5_PONAB (Q5R5V2), LAMP5_RAT (Q5PPI4), LAMP5_XENTR (A4IGL3)» more
|
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
FTSW_IDILO (Q5R0M2), MTMRA_MOUSE (Q7TPM9), MTRAA_XENLA (Q5U581), MTRAB_XENLA (Q6NU08), SCP43_ARATH (Q84W27)» more |
| PDB [Detailed view] |
5 PDB
5GV0; 5GV3; 8ATH; 8FY5; 8FYF |