PROSITE entry PS00552
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PURL: https://purl.expasy.org/prosite/signature/PS00552
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_MERR_1 |
| Accession [info] | PS00552 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00477 |
Name and characterization of the entry
| Description [info] | MerR-type HTH domain signature. |
| Pattern [info] |
[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)- [LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2). |
Numerical results [info]
| Total number of hits | 48 in 48 different sequences |
| Number of true positive hits | 48 in 48 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 32 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 60.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
48 sequences
BLTR_BACSU (P39842), BLUR_ECOLI (P75989), BMRR_BACSU (P39075), CUER_ECO57 (Q8XD09), CUER_ECOL6 (Q8FK74), CUER_ECOLI (P0A9G4), CUER_SALTI (Q8Z8S3), CUER_SALTY (Q93CH6), CUER_SHIFL (P0A9G5), CUER_VIBC3 (A5F2W6), CUER_VIBCH (P0C6D2), GLNR_BACAN (P62172), GLNR_BACCE (P62173), GLNR_BACCR (P62174), GLNR_BACSU (P37582), HMRR2_RHIME (P58379), HMRR_SINMW (Q9X5X4), HSPR_STRCO (P40183), MERR_ACIFR (P22896), MERR_BACCE (P22853), MERR_PSEAI (P0A183), MERR_PSEFL (P0A184), MERR_PSESP (P69413), MERR_SALTI (P0A2Q8), MERR_SERMA (P13111), MERR_SHIFL (P0A2Q9), MERR_STAAU (P22874), MLRA_ECOLI (P33358), MLRA_SALTS (E1WH94), MLRA_SALTY (P0CL12), NOLA_BRADU (P22537), NOLA_BRAEL (P50329), NOLA_BRASN (P50330), SOXR_CHRVO (Q9ZHI4), SOXR_ECO57 (P0ACS3), SOXR_ECOLI (P0ACS2), SOXR_PSEAE (Q51506), SOXR_SALTI (P0A2R1), SOXR_SALTY (P0A2R0), SOXR_SHIFL (P0ACS4), TIPA_STRCO (P0A4T8), TIPA_STRLI (P0A4T9), Y186_HAEIN (P44558), Y293_HAEIN (P44617), YYAN_BACSU (P37510), ZNTR_ECO57 (P0ACS6), ZNTR_ECOLI (P0ACS5), ZNTR_HAEIN (P45277)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
32 sequences
ADHR_BACSU (O06008), BRLR_PSEAE (Q9HUT5), CARA_MYXXA (Q50899), CARH_MYXXA (Q50900), CARH_THET8 (Q53W62), CUER_BACSU (O07586), CUER_YERPE (Q8ZCA8), HMMR_RHILV (Q9X5V4), HMRR1_RHIME (P58378), MERD_ACICA (Q52110), MERD_ENTAG (P0A2Q7), MERD_PSEAI (P06689), MERD_PSEFL (Q51773), MERD_SALTI (P0A2Q6), MERD_SERMA (P08654), MERD_SHIFL (P20102), MTA_BACSU (P71039), SKGA_CAUVC (P0CAV4), SKGA_CAUVN (B8H172), TNRA_BACSU (Q45666), Y1828_MYCTO (P9WME6), Y1828_MYCTU (P9WME7), Y1830_MYCTO (P9WME4), Y1830_MYCTU (P9WME5), Y1859_MYCBO (P67670), Y1861_MYCBO (P67672), Y4778_PSEAE (Q9HV30), Y603_AQUAE (O66861), Y701_SYNY3 (Q55963), YDFL_BACSU (P96690), YFMP_BACSU (O06474), YHI4_RHOCA (P30791)» more |
| PDB [Detailed view] |
32 PDB
pdb_00001exi; pdb_00001exj; pdb_00001q05; pdb_00001q06; pdb_00001q07; pdb_00001r8e; pdb_00002vz4; pdb_00002zhg; pdb_00002zhh; pdb_00003d6y; pdb_00003d6z; pdb_00003d70; pdb_00003d71; pdb_00003iao; pdb_00003q1m; pdb_00003q2y; pdb_00003q3d; pdb_00003q5p; pdb_00003q5r; pdb_00003q5s; pdb_00004r4e; pdb_00004wls; pdb_00004wlw; pdb_00005crl; pdb_00005d8c; pdb_00005d90; pdb_00005e01; pdb_00006ldi; pdb_00006xh7; pdb_00006xh8; pdb_00007c17; pdb_00007ckq » more |