We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS00675
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PURL: https://purl.expasy.org/prosite/signature/PS00675
Direct ScanProsite submission
General information about the entry
| Entry name [info] | SIGMA54_INTERACT_1 |
| Accession [info] | PS00675 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1992 CREATED;
01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00579 |
Name and characterization of the entry
| Description [info] | Sigma-54 interaction domain ATP-binding region A signature. |
| Pattern [info] |
[LIVMFY](3)-x-G-[DEQ]-[STE]-G-[STAV]-G-K-x(2)-[LIVMFY]. |
Numerical results [info]
| Total number of hits | 393 in 393 different sequences |
| Number of true positive hits | 137 in 137 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 256 in 256 different sequences |
| Number of false negative sequences | 27 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 34.86 % |
| Recall (true positives / (true positives + false negatives)) | 83.54 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
137 sequences
ACOR_CUPNH (P28614), ALGB_PSEAE (P23747), ALGB_PSEPK (Q88RJ6), ALGB_PSESM (Q88AQ2), ANFA_AZOVI (P12626), ATOC_ECOLI (Q06065), CHS5_PYRGI (O93809), CHS6_PYRO7 (G4N0X4), DCTD_PSEAE (Q9HU19), DCTD_RHILE (P10046), DCTD_RHIME (P13632), DHAR_CITFR (P45512), DHAR_ECOLI (P76016), FHLA_ECOLI (P19323), FHLA_SALTS (E1WAA4), FHLA_SALTY (P0CL46), FLBD_CAUVC (P17899), FLEQ_PSEAE (G3XCV0), FLER_PSEAE (Q9I4N3), FLGR_HELPY (O25408), GLRR_ECOLI (P0AFU4), HOXA_BRADU (P31908), HOXA_CUPNH (P29267), HRPR_PSESY (P37930), HRPS_PSESH (P26316), HYFR_ECOLI (P71229), LIHY_GEOSE (O85057), LUXO_VIBC3 (O87455), MDN1_ARATH (A0A1P8AUY4), MDN1_DICDI (Q869L3), MOPR_ACIGI (Q43965), NIFA_AZOBR (P30667), NIFA_AZOC5 (P09133), NIFA_AZOLI (P54929), NIFA_AZOVI (P09570), NIFA_BRADU (P05407), NIFA_ENTAG (P54930), NIFA_HERSE (P27713), NIFA_KLEOX (P56266), NIFA_KLEPN (P03027), NIFA_RHIEC (P54931), NIFA_RHILE (P09828), NIFA_RHILT (P24426), NIFA_RHIME (P03028), NIFA_RHOCA (P0CY94), NIFA_RHOCB (D5ARW9), NIFA_SINFN (Q53206), NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERHH (A0KEJ0), NORR_AERS4 (A4STH5), NORR_ALIF1 (Q5E3W8), NORR_CITK8 (A8ANR6), NORR_ECO24 (A7ZQD8), NORR_ECO27 (B7UHC1), NORR_ECO45 (B7MKH8), NORR_ECO55 (B7LEC0), NORR_ECO57 (Q8X854), NORR_ECO5E (B5Z370), NORR_ECO7I (B7NSI9), NORR_ECO81 (B7MZ04), NORR_ECO8A (B7M9E6), NORR_ECOBW (C4ZYV4), NORR_ECODH (B1XCN6), NORR_ECOHS (A8A3I6), NORR_ECOK1 (A1AEP9), NORR_ECOL5 (Q0TEH1), NORR_ECOL6 (Q8FEN6), NORR_ECOLC (B1IUX0), NORR_ECOLI (P37013), NORR_ECOLU (B7N6T9), NORR_ECOSE (B6I695), NORR_ECOSM (B1LQ27), NORR_ECOUT (Q1R7Z1), NORR_ENT38 (A4WDR5), NORR_ESCF3 (B7LW25), NORR_KLEP3 (B5XVA2), NORR_KLEP7 (A6TCX4), NORR_PECAS (Q6D8R9), NORR_SALA4 (B5F363), NORR_SALAR (A9MFX7), NORR_SALCH (Q57KT4), NORR_SALDC (B5FSZ0), NORR_SALEP (B5QV88), NORR_SALG2 (B5RDG4), NORR_SALHS (B4TF23), NORR_SALNS (B4T3B0), NORR_SALPA (Q5PF20), NORR_SALPB (A9N0D7), NORR_SALPC (C0PWN2), NORR_SALSV (B4TT16), NORR_SALTI (Q8Z4C6), NORR_SALTY (Q8ZMJ8), NORR_SERP5 (A8GG93), NORR_SHIBS (Q31X73), NORR_SHIDS (Q32CL9), NORR_SHIF8 (Q0T1D4), NORR_SHIFL (P59402), NORR_SHISS (Q3YYF5), NORR_VIBVU (Q8D4F9), NORR_VIBVY (Q7MFY9), NTRC_AZOC5 (Q04848), NTRC_BRASR (P10576), NTRC_ECO57 (P0AFB9), NTRC_ECOLI (P0AFB8), NTRC_KLEPN (P03029), NTRC_PROHU (P28787), NTRC_RHIME (P10577), NTRC_RHOCB (P09432), NTRC_SALTY (P41789), PILR_PSEAE (Q00934), QSEF_ECO57 (P0AFU5), RAB5B_PLAF7 (Q76NM7), RAC2A_ARATH (O49841), RAC2B_ARATH (Q9SF92), ROCR_BACSU (P38022), SFNR_PSEPF (Q3K999), SFNR_PSEPU (Q845S7), SHS1_CANAL (Q59VX8), STC_CLOBE (P26047), TYRR_ECOLI (P07604), TYRR_ENTAG (Q9ZIB7), TYRR_HAEIN (P44694), TYRR_SALTI (P0A2D8), TYRR_SALTY (P0A2D7), UACR_ECOLI (Q46802), VASH_VIBCH (Q9KN48), VNFA_AZOVI (P12627), WTSA_PANSE (P36219), XYLR_PSEPU (P06519), YHYA_PSESN (Q01265), YQIR_BACSU (P54529), ZRAR_ECO57 (Q8X613), ZRAR_ECOLI (P14375), ZRAR_KLEOX (Q9APD9), ZRAR_SALTI (Q8Z333), ZRAR_SALTY (P25852)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
27 sequences
ACOR_BACSU (O31551), DGAR_SALT1 (D0ZLR9), HRPS_PSESY (P37931), HUPR_RHOCA (P26408), LEVR_BACSU (P23914), LUXO_VIBC1 (A7MVC2), LUXO_VIBCH (Q9KT84), LUXO_VIBHA (P0C5S5), LUXO_VIBPA (Q87MX7), LUXO_VIBVU (Q8CWJ5), MIMR_MYCGD (G3XGC1), MIMR_MYCS2 (A0QTU7), NTRC_AZOBR (P45671), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), NTRX_AZOC5 (Q04849), PGTA_SALTY (P06184), PRPR_ECOLI (P77743), PRPR_SALTY (P74839), PSPF_ECOLI (P37344), RTCR_ECOLI (P38035), TYRR_CITBR (O54426), Y4PA_SINFN (P55610), YPLP_BACSU (P54156)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
NIFA_AZOCH (P56269), NTRC_VIBAL (P19905), YFHA_KLEOX (P21710) |
| UniProtKB/Swiss-Prot False positive sequences |
256 sequences
DNAA_TROW8 (Q83NZ5), DNAA_TROWT (Q83N52), GEM1_KLULA (Q6CY37), GEM1_YARLI (Q6C2J1), GEM1_YEAST (P39722), HPRK2_OCEIH (Q8EL04), HPRK_NITEU (Q82Y30), HPRK_UREPA (Q9PR69), ISTB_BACFR (Q64NF1), LIIP1_ARATH (Q9C5J9), LIIP2_ARATH (F4KFD8), MDN1_YEAST (Q12019), PEZT_STRPN (Q97QZ1), PHNC2_HALWD (Q18H36), PHNC_HALSA (Q9HNI8), PTLH_BORBR (Q7WDT5), PTLH_BORPA (Q7W2T7), PTLH_BORPE (Q7VSX3), QKGA_DICDI (Q8SSS9), RAA1A_ARATH (P28185), RAA1B_ARATH (Q39222), RAA1C_ARATH (Q9FK68), RAA1D_ARATH (Q9SN35), RAA1E_ARATH (O49513), RAA1F_ARATH (Q9FJH0), RAA1G_ARATH (Q9LK99), RAA1H_ARATH (Q1PEX3), RAA1I_ARATH (Q9S810), RAA2A_ARATH (O04486), RAA2B_ARATH (Q9LNW1), RAA2C_ARATH (Q96283), RAA2D_ARATH (Q9FIF9), RAB10_CAEEL (Q94148), RAB10_CANLF (P24409), RAB10_CHICK (Q5ZIT5), RAB10_DIPOM (P22127), RAB10_HUMAN (P61026), RAB10_MOUSE (P61027), RAB10_PONAB (Q5R5U1), RAB10_RAT (P35281), RAB13_BOVIN (Q58DS5), RAB13_CANLF (F1PTE3), RAB13_DANRE (Q7T3A4), RAB13_HUMAN (P51153), RAB13_MESAU (Q5KTJ6), RAB13_MOUSE (Q9DD03), RAB13_RAT (P35286), RAB15_BOVIN (Q1RMR4), RAB15_HUMAN (P59190), RAB15_MOUSE (Q8K386), RAB15_RAT (P35289), RAB18_BOVIN (Q0IIG8), RAB18_CAEBR (P90726), RAB18_CAEEL (Q8MXS1), RAB18_CHICK (Q5ZLG1), RAB18_HUMAN (Q9NP72), RAB18_MOUSE (P35293), RAB18_PONAB (Q5R5H5), RAB18_RAT (Q5EB77), RAB1A_ARATH (O23561), RAB1A_CANLF (P62822), RAB1A_DICDI (P34139), RAB1A_HUMAN (P62820), RAB1A_LYMST (Q05974), RAB1A_MOUSE (P62821), RAB1A_PIG (Q52NJ2), RAB1A_RAT (Q6NYB7), RAB1B_ARATH (Q38922), RAB1B_BOVIN (Q2HJH2), RAB1B_DICDI (P34140), RAB1B_HUMAN (Q9H0U4), RAB1B_MACFA (Q4R8X3), RAB1B_MOUSE (Q9D1G1), RAB1B_PIG (Q06AU7), RAB1B_PONAB (Q5RE13), RAB1B_RAT (P10536), RAB1C_ARATH (P92963), RAB1C_DICDI (O76173), RAB1C_HUMAN (Q92928), RAB1D_DICDI (Q54NU2), RAB1_DIPOM (P22125), RAB1_THEAN (Q4UB16), RAB1_THEPA (Q9TVU5), RAB25_BOVIN (Q58DW6), RAB25_CANLF (E2RQ15), RAB25_HUMAN (P57735), RAB25_MOUSE (Q9WTL2), RAB25_RABIT (P46629), RAB26_BOVIN (Q29RR0), RAB26_HUMAN (Q9ULW5), RAB26_MOUSE (Q504M8), RAB26_RAT (P51156), RAB2A_CANLF (P61105), RAB2A_CHICK (Q90965), RAB2A_DICDI (P36409), RAB2A_HUMAN (P61019), RAB2A_MACFA (Q4R4X6), RAB2A_MAIZE (P49103), RAB2A_MOUSE (P53994), RAB2A_PONAB (Q5R6B6), RAB2A_RABIT (Q01971), RAB2A_RAT (P05712), RAB2B_HUMAN (Q8WUD1), RAB2B_MAIZE (P49104), RAB2B_MOUSE (P59279), RAB2_LYMST (Q05975), RAB35_HUMAN (Q15286), RAB35_MOUSE (Q6PHN9), RAB35_RAT (Q5U316), RAB37_HUMAN (Q96AX2), RAB37_MOUSE (Q9JKM7), RAB7A_BOVIN (Q3T0F5), RAB7A_CANLF (P18067), RAB7A_DICDI (P36411), RAB7A_HUMAN (P51149), RAB7A_MOUSE (P51150), RAB7A_PAROT (Q95UJ0), RAB7A_PONAB (Q5R9Y4), RAB7A_RABIT (O97572), RAB7A_RAT (P09527), RAB7B_PAROT (Q6DUB4), RAB7_CENCI (Q40787), RAB7_EPICO (H9BW96), RAB7_GIBZE (I1RMF2), RAB7_GOSHI (Q9XER8), RAB7_MESCR (P93267), RAB7_NEUCR (Q9C2L8), RAB7_PEA(P31022), RAB7_PRUAR (O24461), RAB7_SOYBN (Q43463), RAB7_VIGAC (Q41640), RAB8A_BOVIN (A4FV54), RAB8A_CANLF (P61007), RAB8A_DICDI (P20790), RAB8A_HUMAN (P61006), RAB8A_MACFA (Q4R5P1), RAB8A_MOUSE (P55258), RAB8A_PONAB (Q5R4A3), RAB8A_RAT (P35280), RAB8B_BOVIN (Q2HJI8), RAB8B_DICDI (P20791), RAB8B_HUMAN (Q92930), RAB8B_MOUSE (P61028), RAB8B_PONAB (Q5REC9), RAB8B_RAT (P70550), RAB8_DIPOM (P22128), RABA_DICDI (P34141), RABC1_ARATH (O23657), RABC_DICDI (P34143), RABF1_ARATH (Q9CB01), RABF1_DICDI (Q558I0), RABG1_ARATH (Q948K6), RABG2_ARATH (Q9SJ11), RABL3_BOVIN (Q32LJ6), RABL3_CHICK (Q5ZKR4), RABL3_DANRE (Q6TNS7), RABL3_HUMAN (Q5HYI8), RABL3_MOUSE (Q9D4V7), RABL3_XENLA (Q6GPS4), RABL3_XENTR (A4IHM6), RAD2A_ARATH (P28188), RAD2B_ARATH (Q9FPJ4), RAD2C_ARATH (Q9SEH3), RAE1A_ARATH (O24466), RAE1C_ARATH (P28186), RAE1D_ARATH (Q9LZD4), RAE1E_ARATH (Q9SF91), RAG3A_ARATH (Q948K8), RAG3B_ARATH (O04157), RAG3C_ARATH (Q9LW76), RAG3D_ARATH (Q9C820), RAG3E_ARATH (Q9XI98), RAG3F_ARATH (Q9LS94), RB11A_BOVIN (Q2TA29), RB11A_CAEEL (O01803), RB11A_CANLF (P62490), RB11A_CHICK (Q5ZJN2), RB11A_DICDI (P36412), RB11A_HUMAN (P62491), RB11A_MOUSE (P62492), RB11A_PIG (Q52NJ1), RB11A_PONAB (Q5R9M7), RB11A_RABIT (P62493), RB11A_RAT (P62494), RB11A_TOBAC (Q40523), RB11B_BOVIN (Q3MHP2), RB11B_DICDI (Q54KM9), RB11B_DIPOM (P22129), RB11B_HUMAN (Q15907), RB11B_MOUSE (P46638), RB11B_RAT (O35509), RB11B_TOBAC (Q40521), RB11C_LOTJA (Q40193), RB11D_LOTJA (Q40194), RB11E_LOTJA (Q40195), RB18A_LYMST (Q05976), RB18B_DANRE (Q6DHC1), RB1BV_BETVU (Q39433), RB2BV_BETVU (Q39434), REM2_HUMAN (Q8IYK8), REM2_MOUSE (Q8VEL9), REM2_RAT(Q9WTY2), RIC1_ORYSJ (P40392), RIC2_ORYSJ (P40393), RLGP2_ORYSJ (Q40723), ROC11_DICDI (Q6XHA5), ROCO4_DICDI (Q6XHB2), RSGA_STAAC (Q9KX08), RSGA_STAAM (P67681), RSGA_STAAN (P67682), RSGA_STAAR (Q6GHL4), RSGA_STAAS (Q6G9Z2), RSGA_STAAW (P67683), RSGA_STAEQ (Q5HPX0), RSGA_STAES (Q8CSV8), RSGA_STAHJ (Q4L5S2), RYL1_YARLI (P41924), SBCC_LACLA (Q9CFZ0), SEC4_CANAL (P0CY31), SEC4_CANAW (C4YL11), SEC4_CANAX (P0CY30), SEC4_CANGA (O42819), SEC4_YEAST (P07560), SPN1_SCHPO (O36023), SUNT_BACSU (P68579), SUNT_BPSPB (P68580), V3_SPTNK(B4YNE3), VIRBB_BRUA2 (Q2YJ82), VIRBB_BRUAB (P0C534), VIRBB_BRUME (Q8YDY9), VIRBB_BRUSU (Q8FXK7), Y6523_BACAN (Q6F054), Y7407_DICDI (Q54KD0), Y8923_DICDI (Q54FZ8), YPT1_NEUCR (P33723), YPT1_PHYIN (Q01890), YPT1_SCHPO (P11620), YPT2_SCHPO (P17609), YPT31_YEAST (P38555), YPT32_YEAST (P51996), YPT3_NICPL (Q01111), YPT71_SCHPO (Q9HDY0), YPT7_EMENI (C8VQY7), YPT7_PYRO7 (G4MYS1), YPT7_SCHPO (O94655), YPT7_YEAST (P32939), YPTC1_CHLRE (Q39571), YPTC4_CHLRE (Q39570), YPTC5_CHLRE (Q39573), YPTC6_CHLRE (Q39572), YPTM2_MAIZE (Q05737), YPTV1_VOLCA (P31584), YPTV2_VOLCA (P36861), YPTV3_VOLCA (P36862), YPTV4_VOLCA (P36863), YPTV5_VOLCA (P36864)» more |
| PDB [Detailed view] |
11 PDB
pdb_00001ojl; pdb_00005exp; pdb_00005exs; pdb_00005ext; pdb_00005exx; pdb_00006j7e; pdb_00006jdi; pdb_00006jdl; pdb_00007ejw; pdb_00008p53; pdb_00008pb9 |