PROSITE entry PS00846

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General information about the entry

Entry name [info]	HTH_ARSR_1
Accession [info]	PS00846
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00661

Name and characterization of the entry

Description [info]	Bacterial regulatory proteins, arsR family signature.
Pattern [info]	C-x(2)-D-[LIVM]-x(6)-[ST]-x(4)-S-[HYR]-[HQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	15 in 15 different sequences
Number of true positive hits	14 in 14 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	37
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	93.33 %
Recall (true positives / (true positives + false negatives))	27.45 %

Comments [info]

Taxonomic range [info]	Archaea, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	14 sequences ARSR1_ECOLX (P15905), ARSR2_ECOLX (P52144), ARSR_BACSU (P45949), ARSR_ECOLI (P37309), ARSR_STAAU (P30338), ARSR_STAXY (Q01256), CADC_ALKPO (P30339), CADC_LACLL (P0A4U3), CADC_LISIN (P0A4U2), CADC_LISMN (Q56405), CADC_STAAU (P20047), CADF_STAAU (P37374), SMTB_SYNE7 (P30340), ZIAR_SYNY3 (Q55940) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	37 sequences ARSR1_PSEPK (Q88LK1), ARSR2_PSEPK (Q88JD1), ASER_BACSU (P96677), B115_SSV1 (P0C7L5), BIGR_AGRFC (Q8UAA8), BIGR_XYLFA (Q9PFB1), BIGR_XYLFT (Q87AD5), CMTR_MYCBO (P67732), CMTR_MYCTO (P9WMI8), CMTR_MYCTU (P9WMI9), CZRA_BACSU (O31844), HLYU_VIBCH (P52695), HTHAR_MYCTU (O53478), KMTR_MYCTU (O53838), MERR_STRLI (P30346), NMTR_MYCTU (O69711), NOLR_RHIML (P28267), PAGR_BACAN (O31178), SDPR_BACSU (O32242), SMTB_MYCTO (P9WMI4), SMTB_MYCTU (P9WMI5), Y0081_MYCTO (P9WMI6), Y0081_MYCTU (P9WMI7), Y1325_METJA (Q58721), Y1398_METJA (Q58793), Y1553_METJA (Q58948), Y1563_METJA (Q58958), Y229_METJA (Q57682), Y324_MYCTU (O08446), Y361_METJA (Q57807), Y774_METJA (Q58184), YBZH_BACSU (C0H3S9), YCEK_BACSU (O34464), YCZG_BACSU (O31480), YDFF_BACSU (P96683), YGAV_ECOLI (P77295), YUZN_BACSU (C0H3Q8) » more
UniProtKB/Swiss-Prot False positive sequences	1 sequence T121B_MOUSE (Q99MX7)
PDB [Detailed view]	5 PDB 1R1T; 1R23; 1SMT; 1U2W; 3F72