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We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Amos Bairoch

PROSITE entry PS00871


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PURL: https://purl.expasy.org/prosite/signature/PS00871

Direct ScanProsite submission
General information about the entry

Entry name [info] CLPAB_2
Accession [info] PS00871
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00679

Name and characterization of the entry

Description [info] Chaperonins clpA/B signature 2.
Pattern [info] 
[RGT]-[LIVMFY]-[DN]-x-[ST]-E-[LIVMFY]-x-[ED]-[KRQEAS]-x-[STA]-x-[STAD]-
[KRS]-[LIVM]-x-G-[STAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.


Total number of hits 192 in 192 different sequences
Number of true positive hits 191 in 191 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 99.48 %
Recall (true positives / (true positives + false negatives)) 93.63 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 191 sequences 

CLPAA_SOLLC (P31541), CLPAB_SOLLC (P31542), CLPA_BRANA  (P46523), 

CLPA_ECO57  (P0ABI1), CLPA_ECOL6  (P0ABI0), CLPA_ECOLI  (P0ABH9), 
CLPA_FUSBL  (P05444), CLPB1_ARATH (P42730), CLPB1_CHLTE (Q8KG79), 
CLPB1_NOSS1 (Q8YUL9), CLPB1_ORYSJ (Q6F2Y7), CLPB1_PARMW (Q7U637), 
CLPB1_STRAW (Q82EU9), CLPB1_SYNE7 (P53533), CLPB1_SYNY3 (P74459), 
CLPB1_THEVB (Q8DJ40), CLPB2_NOSS1 (Q8YM56), CLPB2_ORYSJ (Q75GT3), 
CLPB2_PARMW (Q7U3T3), CLPB2_STRAW (Q826F2), CLPB2_SYNE7 (O34209), 
CLPB2_SYNY3 (P74361), CLPB2_THEVB (Q8DG71), CLPB3_ARATH (Q9LF37), 
CLPB4_ARATH (Q8VYJ7), CLPB_AGRFC  (Q7CU92), CLPB_AQUAE  (O67588), 
CLPB_BACAN  (Q81TT4), CLPB_BACC1  (Q73BY1), CLPB_BACCR  (Q81GM5), 
CLPB_BACTN  (Q89YY3), CLPB_BDEBA  (Q6MIV0), CLPB_BIFLO  (Q8G4X4), 
CLPB_BLOFL  (Q7VQF3), CLPB_BORBR  (Q7WHB6), CLPB_BORPA  (Q7W9E6), 
CLPB_BORPE  (Q7VYV6), CLPB_BRADU  (Q89UL2), CLPB_BRUME  (Q8YJ91), 
CLPB_BRUSU  (Q7CEG6), CLPB_CAMJE  (Q9PI02), CLPB_CAUVC  (Q9A9T4), 
CLPB_CHLCV  (Q822Q4), CLPB_CHLMU  (Q9PKS5), CLPB_CHLPN  (Q7AJA9), 
CLPB_CHLTR  (O84115), CLPB_CHRVO  (Q7NWN7), CLPB_CLOAB  (Q97KG0), 
CLPB_CLOPE  (Q8XKG8), CLPB_CLOTE  (Q898C7), CLPB_CORDI  (Q6NF05), 
CLPB_COREF  (Q8FM94), CLPB_CORGL  (P53532), CLPB_COXBU  (Q83F55), 
CLPB_DEIRA  (Q9RVI3), CLPB_DICNO  (P17422), CLPB_ECO57  (P63285), 
CLPB_ECOL6  (P63286), CLPB_ECOLI  (P63284), CLPB_ENTFA  (Q831Y7), 
CLPB_FUSNN  (Q8RHQ8), CLPB_GEOSL  (Q74FF1), CLPB_GLOVI  (Q7NFE9), 
CLPB_HAEDU  (Q7VNH1), CLPB_HAEIN  (P44403), CLPB_HELHP  (Q7VJY3), 
CLPB_HELPJ  (Q9ZMH1), CLPB_HELPY  (P71404), CLPB_LACLA  (Q9CFF3), 
CLPB_LACLM  (O68185), CLPB_LACPL  (Q88VX7), CLPB_LEPBY  (O87444), 
CLPB_LEPIC  (Q72QU2), CLPB_LEPIN  (Q8F509), CLPB_LISIN  (Q929G7), 
CLPB_LISM4  (G2K265), CLPB_LISMF  (Q71XF9), CLPB_LISMO  (Q8Y570), 
CLPB_MALP2  (Q8EW28), CLPB_MEIRU  (Q7X2S8), CLPB_MYCBO  (P63287), 
CLPB_MYCGA  (Q7NAZ3), CLPB_MYCGE  (P47597), CLPB_MYCLE  (Q9CB26), 
CLPB_MYCPA  (Q73T66), CLPB_MYCPN  (P75247), CLPB_MYCTO  (P9WPD0), 
CLPB_MYCTU  (P9WPD1), CLPB_NEIMA  (Q9JTP9), CLPB_NEIMB  (Q9JYQ8), 
CLPB_NITEU  (Q82SD8), CLPB_NITV2  (Q72AW6), CLPB_OCEIH  (Q8EU05), 
CLPB_PARUW  (Q6MD97), CLPB_PASMU  (Q9CKC0), CLPB_PHOLL  (Q7N788), 
CLPB_PHOPR  (Q6LMY0), CLPB_PORGI  (Q7MVE7), CLPB_PROFC  (Q7WSY8), 
CLPB_PROMA  (Q7VBL0), CLPB_PROMM  (Q7V8B1), CLPB_PROMP  (Q7V2A3), 
CLPB_PSEAE  (Q9HVN5), CLPB_PSEPK  (Q88Q71), CLPB_PSESM  (Q889C2), 
CLPB_RALN1  (Q8XZR0), CLPB_RHILO  (Q98G96), CLPB_RHIME  (Q92MK7), 
CLPB_RHOBA  (Q7UM33), CLPB_RHOPA  (Q6N1H2), CLPB_RICBR  (Q1RGR1), 
CLPB_RICCN  (Q92JK8), CLPB_RICFE  (Q4UN57), CLPB_RICPR  (Q9ZEA9), 
CLPB_RICTY  (Q68XR2), CLPB_SALTI  (Q7AMH5), CLPB_SALTY  (Q7CQ01), 
CLPB_SHEON  (Q8EBE6), CLPB_SHIFL  (Q7UBW5), CLPB_STAAC  (Q5HHB0), 
CLPB_STAAM  (Q99VB5), CLPB_STAAN  (Q7A6G6), CLPB_STAAR  (Q6GIB2), 
CLPB_STAAS  (Q6GAV1), CLPB_STAAW  (Q8NXE7), CLPB_STAEQ  (Q5HQI5), 
CLPB_STAES  (Q8CPT5), CLPB_STRAL  (Q9Z6E4), CLPB_STRCO  (Q8CJV9), 
CLPB_STRMU  (Q8DTC7), CLPB_THET2  (Q72IK9), CLPB_THET8  (Q9RA63), 
CLPB_TREDE  (Q73K92), CLPB_TREPA  (O83110), CLPB_TROW8  (Q83N78), 
CLPB_TROWT  (Q83FI1), CLPB_VIBCH  (Q9KU18), CLPB_VIBPA  (Q87S63), 
CLPB_VIBVU  (Q8DEV2), CLPB_VIBVY  (Q7MNK1), CLPB_WOLPM  (Q73IE4), 
CLPB_WOLSU  (Q7M9X4), CLPB_XANAC  (Q8PHQ4), CLPB_XANCP  (Q8P6A0), 
CLPB_XYLFA  (Q9PGC1), CLPB_XYLFT  (Q87AX8), CLPB_YEREN  (Q9F746), 
CLPB_YERPE  (Q74X11), CLPC1_ARATH (Q9FI56), CLPC1_ORYSJ (Q7F9I1), 
CLPC2_ARATH (Q9SXJ7), CLPC2_ORYSJ (Q2QVG9), CLPC3_ORYSJ (Q53LY0), 
CLPC4_ORYSJ (Q53N47), CLPC_BACSU  (P37571), CLPC_CYACA  (Q9TM05), 
CLPC_GUITH  (O78410), CLPC_PEA(P35100), CLPC_PORPU  (P51332), 
CLPC_PYRYE  (Q1XDF4), CLPC_STAA3  (Q2FJB5), CLPC_STAA8  (Q2G0P5), 
CLPC_STAAB  (Q2YSD6), CLPC_STAAC  (P0C281), CLPC_STAAM  (Q99W78), 
CLPC_STAAN  (Q7A797), CLPC_STAAR  (Q6GJE4), CLPC_STAAS  (Q6GBW3), 
CLPC_STAAW  (Q8NXY8), CLPC_STAEQ  (Q5HRM8), CLPC_STAES  (Q8CQ88), 
CLPC_STAHJ  (Q4L3I4), CLPC_STAS1  (Q49V34), CLPC_STRP6  (Q5XCL7), 
CLPC_TRICV  (P49574), CLPD1_ORYSJ (Q6H795), CLPD2_ORYSJ (Q7XL03), 
CLPD_ARATH  (P42762), CLPE_BACSU  (O31673), CLPE_LACLA  (Q9CI09), 
CLPE_LACLM  (Q9S5Z2), CLPE_STRPN  (P35594), CLPL_LACLL  (Q06716), 
CLP_TRYBB   (P31543), HLYB_BRAHO  (Q54316), HS104_SCHPO (O94641), 
HS104_YEAST (P31539), HSP78_CANAL (Q96UX5), HSP78_SCHPO (O74402), 
HSP78_YEAST (P33416), HSP98_NEUCR (P31540)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

ADPR_RHOER  (Q01357), CLPB2_ARATH (F4JVJ1), CLPB2_CHLTE (Q8KA87), 

CLPL_STAA3  (Q2FDV8), CLPL_STAA8  (Q2FV74), CLPL_STAAB  (Q2YWB1), 
CLPL_STAAC  (Q5HD02), CLPL_STAAM  (Q99R88), CLPL_STAAN  (Q7A3F4), 
CLPL_STAAR  (Q6GDQ0), CLPL_STAAS  (Q6G6C6), CLPL_STAAW  (Q8NUR7), 
CLPV1_PSEAE (Q9I742)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 4 sequences 

CLPA_PINPS  (P81671), CLPA_POPEU  (P84565), CLPB_ACICA  (P82956), 

CLP_TRYCR   (O15885)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

CLPB3_ORYSJ (Q0E3C8)


				
	

	

		PDB
[Detailed view]		
		
			65 PDB
			


			pdb_00001ksf; pdb_00001qvr; pdb_00001r6b; pdb_00003j3r; pdb_00003j3s; pdb_00003j3t; pdb_00003j3u; pdb_00004ciu; pdb_00004d2q; pdb_00004d2u; pdb_00004d2x; pdb_00004fct; 
			
				pdb_00004fcv; pdb_00004fcw; pdb_00004fd2; pdb_00004lj4; pdb_00004lj5; pdb_00004lj6; pdb_00004lj7; pdb_00005kne; pdb_00005ofo; pdb_00005og1; pdb_00005vjh; pdb_00005vy8; 
				pdb_00005vy9; pdb_00005vya; pdb_00006ahf; pdb_00006dju; pdb_00006djv; pdb_00006ed3; pdb_00006em8; pdb_00006em9; pdb_00006emw; pdb_00006n8t; pdb_00006n8v; pdb_00006n8z; 
				pdb_00006oax; pdb_00006oay; pdb_00006og1; pdb_00006og2; pdb_00006og3; pdb_00006qs6; pdb_00006qs7; pdb_00006qs8; pdb_00006uqe; pdb_00006uqo; pdb_00006w1z; pdb_00006w20; 
				pdb_00006w21; pdb_00006w22; pdb_00006w23; pdb_00006w24; pdb_00006w6e; pdb_00006w6g; pdb_00006w6h; pdb_00006w6i; pdb_00006w6j; pdb_00007abr; pdb_00007l6n; pdb_00007uiv; 
				pdb_00007uiw; pdb_00007uix; pdb_00007uiy; pdb_00007uiz; pdb_00007uj0
			
			

			» more