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PROSITE entry PS00908
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Direct ScanProsite submission
General information about the entry
| Entry name [info] | MR_MLE_1 |
| Accession [info] | PS00908 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00706 |
Name and characterization of the entry
| Description [info] | Mandelate racemase / muconate lactonizing enzyme family signature 1. |
| Pattern [info] |
[AT]-x-[SAGCN]-[SAGC]-[LIVM]-[DEQ]-x-A-[LA]-x-[DE]-[LIA]-x-[GA]-[KRQ]- x(4)-[PSA]-[LIV]-x(2)-L-[LIVMF]-G. |
Numerical results [info]
| Total number of hits | 153 in 153 different sequences |
| Number of true positive hits | 153 in 153 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 37 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 80.53 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
153 sequences
AEEP_CLOAB (Q97MK4), AEEP_ECOLI (P51981), CATB1_ACILW (O33946), CATB2_ACILW (O33949), CATB_ACIAD (Q43931), CATB_PSEPU (P08310), CATB_RHOOP (P95608), CBNB_CUPNE (P83763), CLCB_PSEPU (P11452), DGD_PANAM (D4GJ14), DGD_SALEP (B5R541), DGD_SALV4 (B5QBD4), DGOD1_ECOSM (B1LPS5), DGOD2_ECOSM (B1LL17), DGOD_CROS8 (A7MN07), DGOD_ECO24 (A7ZTP7), DGOD_ECO45 (B7MGB3), DGOD_ECO55 (B7L836), DGOD_ECO7I (B7NQZ2), DGOD_ECO81 (B7N1Z6), DGOD_ECO8A (B7M4I1), DGOD_ECOBW (C4ZYW9), DGOD_ECODH (B1X9C1), DGOD_ECOHS (A8A6F2), DGOD_ECOK1 (A1AHM7), DGOD_ECOL5 (Q0TB15), DGOD_ECOLC (B1IYQ2), DGOD_ECOLI (Q6BF17), DGOD_ECOLU (B7NF09), DGOD_ECOSE (B6I3S5), DGOD_ECOUT (Q1R4P4), DGOD_ENT38 (A4W4R9), DGOD_ESCF3 (B7LK34), DGOD_KLEP3 (B5XW18), DGOD_KLEP7 (A6TFZ4), DGOD_PECAS (Q6CYT9), DGOD_RALN1 (Q8XVS8), DGOD_RALPJ (B2UCA8), DGOD_SALCH (Q57I11), DGOD_SALDC (B5FN00), DGOD_SALEP (B5QUN9), DGOD_SALG2 (B5RFZ8), DGOD_SALHS (B4TA81), DGOD_SALNS (B4SY97), DGOD_SALPB (A9MWL9), DGOD_SALPK (B5BIK9), DGOD_SALTY (Q8ZKZ1), DGOD_SERP5 (A8G7R4), DGOD_VARPS (C5CZC3), DGOD_VEREI (A1WPC7), DGOD_XANAC (Q8PLN0), DGOD_XANC8 (Q4UTT5), DGOD_XANCB (B0RTW1), DGOD_XANCP (Q8P9V1), DGOD_XANE5 (Q3BUN6), DGOD_XANOM (Q2P1Q3), DGOD_XANOP (B2SV55), DMGD_CHRSD (Q1QT89), DMGD_HALED (E1V4Y0), DMGD_MUSP7 (C6CBG9), GAD_THETE (Q704D2), GCI_AGRFC (A9CEQ8), GUDX_ECOLI (Q46915), HYEP_ROSLO (F7ZLS5), IMAND_CATAD (C7PW26), IMAND_CLOB8 (A6M2W4), IMAND_ENT38 (A4W7D6), IMAND_ENTBW (A8RQK7), IMAND_ENTCS (C9CN91), IMAND_OCEGH (Q2CIN0), IMAND_PAESJ (C6CVY9), IMAND_PECAS (Q6DAR4), IMAND_PECCP (C6DI84), IMAND_PECPW (D0KC90), IMAND_PSECP (B8HCK2), IMAND_STRSH (B5GCP6), IMAND_VIBBS (A5KUH4), IMAND_VIBH1 (D0X4R4), IMND1_ENTGE (C8ZZN2), IMND1_VIBCR (C9NUM5), IMND2_ENTGE (C9A1P5), IMND2_VIBCY (A6AMN2), MAND1_CAUSK (B0T0B1), MAND1_CAUVC (Q9A4L8), MAND2_CAUSK (B0T4L2), MAND2_CAUVC (Q9AAR4), MAND_CELJU (B3PDB1), MAND_ECOL6 (Q8FHC7), MAND_ECOMS (D8ADB5), MAND_ENT38 (A4WA78), MAND_ESCAT (B1ELW6), MAND_MARMS (A6VRA1), MAND_NOVAD (A4XF23), MAND_PECCP (C6D9S0), MAND_RHIWR (A5V6Z0), MAND_SALG2 (B5RAG0), MAND_SPHSS (Q1NAJ2), MAND_STRS3 (D9UNB2), MAND_XANOB (G7TAD9), MANR_PSEPU (P11444), RHMD_AZOC5 (A8I5F1), RHMD_BURA4 (B1YMY4), RHMD_BURCH (A0KDV2), RHMD_BURCM (Q0BA70), RHMD_BURO0 (B1KAV6), RHMD_BURO1 (Q1BGJ0), RHMD_CALMQ (A8MA91), RHMD_DELAS (A9BQY2), RHMD_ECO27 (B7UFQ9), RHMD_ECO45 (B7MG14), RHMD_ECO57 (Q8XE07), RHMD_ECO81 (B7MXS8), RHMD_ECOBW (C4ZU89), RHMD_ECODH (B1X8W0), RHMD_ECOHS (A8A2B3), RHMD_ECOK1 (A1AD99), RHMD_ECOL5 (Q0TFJ5), RHMD_ECOL6 (Q8FFM8), RHMD_ECOLC (B1IXU0), RHMD_ECOLI (P77215), RHMD_ECOSM (B1LLK1), RHMD_ECOUT (Q1R9G8), RHMD_KLEP3 (B5XNY1), RHMD_KLEP7 (A6TBU8), RHMD_PARP8 (B2JLI8), RHMD_PARPJ (B2TFM7), RHMD_PARXL (Q13LW5), RHMD_POLSJ (Q12DF1), RHMD_SACEN (A4FLW9), RHMD_SALA4 (B5EZH0), RHMD_SALCH (Q57M62), RHMD_SALDC (B5FNT1), RHMD_SALEP (B5R264), RHMD_SALG2 (B5RCB6), RHMD_SALHS (B4TBF8), RHMD_SALNS (B4SYW3), RHMD_SALPA (Q5PIM9), RHMD_SALPB (A9N5C2), RHMD_SALPC (C0Q077), RHMD_SALPK (B5BCQ4), RHMD_SALSV (B4TPH4), RHMD_SALTI (Q8Z548), RHMD_SALTY (Q8ZNF9), RHMD_SHIBS (Q31Z80), RHMD_SHISS (Q3YZV9), RHMD_TOLAT (C4LDK0), RHMD_VEREI (A1WFL2), RSPA_ECOLI (P38104), TCBD_PSESQ (P27099), TFDD1_CUPPJ (P05404), TFDD2_CUPPJ (P42428), TFDD_DELAC (Q9RNZ9), YIN2_STRAM (P32426)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
37 sequences
AAEP_CYTH3 (Q11T61), ACI_STRCO (Q9RKF7), ACI_VIBSJ (H2IFX0), AEEP_BACSU (O34508), AEEP_BACTN (Q8A861), AEEP_FRATN (A0Q5S7), AEEP_THEMA (Q9WXM1), AREP_HERA2 (A9B055), AXEP_FLAJ1 (A5FHW9), AXEP_MARSH (A4AQI7), AXEP_PEDPL (B9XEK4), AXEP_POPTR (B9I2J6), C3HPD_ANCN5 (D7A0Y2), C3HPD_ROSAI (A0NXQ8), DGD_STRBB (D7BPX0), ENOF1_BOVIN (Q2KIA9), ENOF1_HUMAN (Q7L5Y1), ENOF1_PONAB (Q5RAT4), ENOF1_XENLA (Q6INX4), GAD_SACS2 (Q97U27), GALRD_OCEIH (Q8EMJ9), HPBD_PARDP (A1B198), HPBD_SALBH (Q0FPQ4), HYEP_CITBB (B5EFW2), HYEP_ENTFA (Q834W6), HYEP_FLABM (C0BK17), KRDE_DESAH (C0QM06), KRDE_METCA (Q607C7), LGD1_HYPJE (Q0QWS4), NSAR_BACCR (Q81IL5), PHYLO_ARATH (Q15KI9), TAGAD_SALTY (Q8ZL58), TARD_BRADU (Q89FH0), XEEP_FRAP2 (B0TZW0), XEEP_SULDN (Q30PM2), Y4701_DICDI (P0CC06), YITF_BACSU (O06741)» more |
| PDB [Detailed view] |
72 PDB
1DTN; 1JPD; 1MDL; 1MDR; 1MNS; 1MRA; 1MUC; 1NU5; 2CHR; 2GSH; 2I5Q; 2MNR; 2MUC; 2P3Z; 2QJJ; 2QJM; 2QJN; 3BOX; 3BSM; 3CXO; 3D46; 3D47; 3DFH; 3GY1; 3MUC; 3OW1; 3P93; 3PK7; 3QKE; 3R25; 3RGT; 3RR1; 3RRA; 3S47; 3SBF; 3T6C; 3THU; 3TJI; 3TW9; 3TWA; 3TWB; 3UXK; 3UXL; 3V3W; 3V4B; 3VCN; 4E4F; 4F4R; 4FI4; 4FP1; 4GGB; 4GGH; 4GIR; 4GIS; 4GME; 4GYP; 4HNC; 4HNL; 4HPN; 4IHC; 4IL0; 4IL2; 4K1W; 4K2S; 4K8G; 4KPL; 4KT2; 4KWS; 4M6U; 4X2P; 6VIM; 7MQX » more |