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PROSITE entry PS01081


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General information about the entry

Entry name [info] HTH_TETR_1
Accession [info] PS01081
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00830

Name and characterization of the entry

Description [info] TetR-type HTH domain signature.
Pattern [info]
[GS]-[LIVMFYSP]-x(2,3)-[TS]-[LIVMTA]-x(2)-[LIVM]-x(5)-[LIVQSA]-
[STAGENQH]-x-[GPART]-x-[LIVMFA]-[FYSTNRH]-x-[HFYRA]-[FVW]-x-[DNSTKAG]-
[KQMT]-x(2,3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 228 in 228 different sequences
Number of true positive hits 228 in 228 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 152
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
228 sequences

ABRTH_SACEN (A4FLS1), ACRR_ECOL6  (P0ACT0), ACRR_ECOLI  (P0ACS9), 
ACRR_SHIFL  (P0ACT1), ARPR_PSEPU  (Q9KJC4), BDCR_ECOLI  (P39334), 
BEPR_BRUSU  (Q8G2M8), BETI1_CHRSD (Q1QXD9), BETI2_CHRSD (Q9L4K2), 
BETI_AGRFC  (Q8UH57), BETI_BRUA2  (Q2YMS6), BETI_BRUA4  (A6X2G6), 
BETI_BRUAB  (Q57EH9), BETI_BRUC2  (A9M9H9), BETI_BRUMB  (C0RHQ4), 
BETI_BRUME  (Q8YFY3), BETI_BRUSI  (B0CKN5), BETI_BRUSU  (Q8G1Z7), 
BETI_BURA4  (B1Z032), BETI_BURCH  (A0B2F5), BETI_BURCJ  (B4EHJ0), 
BETI_BURCM  (Q0B713), BETI_BURL3  (Q39A42), BETI_BURM1  (A9AN01), 
BETI_BURM7  (A3MEC5), BETI_BURM9  (A2RWD7), BETI_BURMA  (Q62CH6), 
BETI_BURO0  (B1K709), BETI_BURO1  (Q1BQE0), BETI_BURP0  (A3P6A9), 
BETI_BURP1  (Q3JLL9), BETI_BURP6  (A3NKP7), BETI_BURPS  (Q63KK9), 
BETI_BURTA  (Q2T6C8), BETI_BURVG  (A4JJG4), BETI_CROS8  (A7MFA6), 
BETI_ECO24  (A7ZI52), BETI_ECO27  (B7UJG6), BETI_ECO45  (B7MCD2), 
BETI_ECO55  (B7L442), BETI_ECO57  (Q8X6C3), BETI_ECO5E  (B5Z1R2), 
BETI_ECO7I  (B7NK49), BETI_ECO8A  (B7M2V7), BETI_ECODH  (B1XET8), 
BETI_ECOHS  (A7ZWV6), BETI_ECOL5  (Q0TKV9), BETI_ECOL6  (Q8FKI7), 
BETI_ECOLC  (B1J0W4), BETI_ECOLI  (P17446), BETI_ECOLU  (B7N8L5), 
BETI_ECOSE  (B6I093), BETI_ECOSM  (B1LIJ9), BETI_ECOUT  (Q1RFM1), 
BETI_KLEP3  (B5Y006), BETI_PARP8  (B2JS87), BETI_PARPJ  (B2TCK0), 
BETI_PARXL  (Q13NG5), BETI_PECAS  (Q6D6E1), BETI_PECCP  (C6DKY6), 
BETI_PROMH  (B4EX96), BETI_PSE14  (Q48CM5), BETI_PSEA7  (A6VEI5), 
BETI_PSEA8  (B7V5R5), BETI_PSEAB  (Q02DY8), BETI_PSEAE  (Q9HTJ0), 
BETI_PSEF5  (Q4K4K9), BETI_PSEFS  (C3K3D1), BETI_PSEMY  (A4XPI7), 
BETI_PSEPF  (Q3K5H5), BETI_PSESM  (Q88AF0), BETI_PSEU2  (Q4ZM61), 
BETI_RHILO  (Q985M2), BETI_SERP5  (A8GBX7), BETI_SHIF8  (Q0T7M8), 
BETI_VIBA3  (B7VQ27), BETI_VIBC1  (A7N212), BETI_VIBPA  (Q87H51), 
BETI_VIBVU  (Q8D3K4), BETI_VIBVY  (Q7MF14), BETI_YERP3  (A7FKL4), 
BETI_YERPA  (Q1C930), BETI_YERPB  (B2K8U6), BETI_YERPE  (Q8ZGV8), 
BETI_YERPN  (Q1CFR9), BETI_YERPP  (A4TNP0), BETI_YERPS  (Q66D52), 
BM3R1_PRIMG (P43506), CECR_ECOLI  (P0ACU0), CECR_SHIFL  (P0ACU1), 
CHLER_MYCTO (P9WMD2), CHLER_MYCTU (P9WMD3), ENVR_ECO57  (P0ACT3), 
ENVR_ECOLI  (P0ACT2), FATR_BACSU  (O08335), HBDR_AROS1  (P0DXG3), 
HTHR_MYCBO  (P67443), HTHR_MYCTO  (P9WMC2), HTHR_MYCTU  (P9WMC3), 
HTHTR_KLEPH (A0A0H3GJQ8), HTHTR_SALTY (Q8ZR43), MEPR_PSEPU  (P0C068), 
MTRR_NEIGO  (P39897), PKSA_BACSU  (O34381), QACR_STAAM  (P0A0N3), 
QACR_STAAU  (P0A0N4), QACR_STAHA  (P0A0N5), SLMA_ACTP2  (A3N3Q5), 
SLMA_ACTP7  (B3H337), SLMA_ACTPJ  (B0BTZ2), SLMA_CITK8  (A8ARM8), 
SLMA_CROS8  (A7MQB0), SLMA_ECO24  (A7ZTJ2), SLMA_ECO27  (B7UM47), 
SLMA_ECO45  (B7MFK2), SLMA_ECO55  (B7L761), SLMA_ECO57  (Q8X580), 
SLMA_ECO5E  (B5YWD9), SLMA_ECO7I  (B7NQ02), SLMA_ECO81  (B7N282), 
SLMA_ECO8A  (B7M4C6), SLMA_ECOBW  (C4ZXN3), SLMA_ECODH  (B1X975), 
SLMA_ECOHS  (A8A6A3), SLMA_ECOK1  (A1AHH2), SLMA_ECOL5  (Q0TBG8), 
SLMA_ECOL6  (Q8FC86), SLMA_ECOLC  (B1IYV9), SLMA_ECOLI  (P0C093), 
SLMA_ECOLU  (B7NEU5), SLMA_ECOSE  (B6I3L8), SLMA_ECOSM  (B1LK78), 
SLMA_EDWI9  (C5B9D1), SLMA_ENT38  (A4W508), SLMA_ERWT9  (B2VF78), 
SLMA_ESCF3  (B7LVK2), SLMA_GLAP5  (B8F853), SLMA_HAEDU  (Q7VN48), 
SLMA_HAEI8  (Q4QLV2), SLMA_HAEIE  (A5UDB3), SLMA_HAEIG  (A5UI96), 
SLMA_HAEIN  (P29280), SLMA_KLEP3  (B5XTG2), SLMA_KLEP7  (A6TFN2), 
SLMA_MANSM  (Q65R67), SLMA_PECAS  (Q6DAW0), SLMA_PECCP  (C6DIC4), 
SLMA_PHOLL  (Q7MY26), SLMA_PHOPR  (Q6LVN6), SLMA_PROMH  (B4F0W5), 
SLMA_SALA4  (B5EXE5), SLMA_SALAR  (A9MKN4), SLMA_SALCH  (Q57IA1), 
SLMA_SALDC  (B5FM64), SLMA_SALEP  (B5R5G5), SLMA_SALG2  (B5RGE6), 
SLMA_SALHS  (B4T9C5), SLMA_SALNS  (B4SXE2), SLMA_SALPA  (Q5PC27), 
SLMA_SALPB  (A9MVN6), SLMA_SALPC  (C0Q1X3), SLMA_SALPK  (B5BI15), 
SLMA_SALSV  (B4TZY2), SLMA_SALTI  (Q8Z2H4), SLMA_SALTY  (Q8ZL46), 
SLMA_SERP5  (A8GLE8), SLMA_SHIB3  (B2TTV5), SLMA_SHIF8  (Q0SYG8), 
SLMA_SHIFL  (P0C094), SLMA_SODGM  (Q2NQT9), SLMA_YERE8  (A1JHW9), 
SLMA_YERP3  (A7FCT1), SLMA_YERPA  (Q1C264), SLMA_YERPB  (B2JYN0), 
SLMA_YERPE  (Q8ZJP6), SLMA_YERPG  (A9R671), SLMA_YERPN  (Q1CCZ9), 
SLMA_YERPP  (A4TSE0), SLMA_YERPS  (Q66GD9), SLMA_YERPY  (B1JQX6), 
SRPR_PSEPU  (Q9R9T9), TCMR_STRGA  (P39885), TETC_ECOLX  (P28815), 
TETR1_ECOLX (P03038), TETR2_ECOLX (P04483), TETR3_ECOLX (P03039), 
TETR4_ECOLX (P0ACT4), TETR4_SALOR (P0ACT5), TETR5_ECOLX (P21337), 
TETR7_VIBAN (P51560), TETR8_PASMD (P51561), TETR8_PHODP (P51562), 
TETR_MYCA9  (B1MM06), TTGR_PSEPK  (Q88N29), TTGR_PSEPT  (Q9AIU0), 
TTGW_PSEPT  (Q93PU7), UIDR_ECO57  (P0ACT8), UIDR_ECOL6  (P0ACT7), 
UIDR_ECOLI  (P0ACT6), UIDR_SHIFL  (P0ACT9), Y1388_MYCBO (P67435), 
Y1556_MYCTO (P9WMD0), Y1556_MYCTU (P9WMD1), Y1581_MYCBO (P67437), 
Y2250_MYCTO (P9WMC4), Y2250_MYCTU (P9WMC5), Y2274_MYCBO (Q7VEN0), 
Y2364_STAAN (Q7A3C7), Y2452_STAAB (Q2YWD0), Y2464_STAAS (Q6G696), 
Y2498_STAAW (Q79ZX9), Y2515_STAA3 (Q2FDS9), Y2578_STAAM (Q99R60), 
Y2593_STAAC (Q5HCX3), Y2658_STAAR (Q6GDM3), Y2897_STAA8 (Q2FV42), 
Y2912_MYCTO (P9WMC6), Y2912_MYCTU (P9WMC7), Y2936_MYCBO (P67441), 
Y570_HAEIN  (P44757), Y767_MYCTO  (P9WMD6), Y767_MYCTU  (P9WMD7), 
Y790_MYCBO  (P67433), Y893_HAEIN  (P44923), YERO_BACSU  (O31500), 
YHGD_BACSU  (P32398), YTTP_BACSU  (O34970), YUXN_BACSU  (P40950)
» more

UniProtKB/Swiss-Prot
False negative sequences
152 sequences

ABRT_STRLN  (P0DXG2), ACNR_CORDI  (Q6NH62), ACNR_COREF  (Q8FTA6), 
ACNR_CORGL  (Q8NQ97), ACNR_CORJK  (Q4JVM3), ACNR_MYCTU  (O53165), 
ACUR_CERS4  (Q3J6K8), AFRP_STRGR  (Q9ZN78), ALKX_MYCTU  (O05892), 
AQDR_RHOER  (A0A0E4AFE3), BETI_RHIME  (O69786), BETI_STRM5  (B4SHW1), 
COMR_ECOLI  (P75952), DHAR_MYCSX  (Q9RAJ1), DHAS_LACLA  (Q9CIV9), 
ETHR_MYCBO  (Q7TVI1), ETHR_MYCS2  (A0R666), ETHR_MYCTO  (P9WMC0), 
ETHR_MYCTU  (P9WMC1), FABR_CITK8  (A8AKV8), FABR_CROS8  (A7ML90), 
FABR_ECO24  (A7ZUI3), FABR_ECO57  (Q7A964), FABR_ECOBW  (C5A0R2), 
FABR_ECODH  (B1XBX4), FABR_ECOHS  (A8A771), FABR_ECOK1  (A1AIE5), 
FABR_ECOL5  (Q0TA93), FABR_ECOL6  (Q8FB90), FABR_ECOLI  (P0ACU5), 
FABR_ECOUT  (Q1R3U4), FABR_KLEP7  (A6TGE7), FABR_SALAR  (A9MHG9), 
FABR_SALCH  (Q57H90), FABR_SALPA  (Q5PK70), FABR_SALPC  (C0Q479), 
FABR_SALPK  (B5BJN7), FABR_SALTI  (Q8XGD6), FABR_SALTY  (Q7CPB8), 
FABR_SHIB3  (B2TWF8), FABR_SHIBS  (Q31U25), FABR_SHIDS  (Q32AE3), 
FABR_SHIF8  (Q0SY28), FABR_SHIFL  (P0ACU6), FABR_SHISS  (Q3YV13), 
FABR_YERE8  (A1JI38), FABR_YERP3  (A7FD11), FABR_YERPA  (Q1CBU4), 
FABR_YERPB  (B2JZF5), FABR_YERPE  (Q7CL09), FABR_YERPG  (A9R6N6), 
FABR_YERPN  (Q1CNP3), FABR_YERPP  (A4TRG3), FABR_YERPS  (Q66G60), 
FABR_YERPY  (B1JQ48), FADR_BACSU  (P94548), HDNOR_PAENI (Q8GAF9), 
HTHR_STRCO  (Q9ADP7), ICAR_STAA8  (Q9RQQ0), ICAR_STAAC  (Q5HCN2), 
ICAR_STAAE  (A6QKF4), ICAR_STAAM  (Q7A2K5), ICAR_STAAN  (Q7A352), 
ICAR_STAAR  (Q6GDD9), ICAR_STAAS  (Q6G609), ICAR_STAAW  (Q79ZV4), 
ICAR_STAEP  (Q8GLC6), ICAR_STAEQ  (Q5HKQ1), KSTR2_MYCS2 (A0R4Z6), 
KSTR2_MYCTO (P9WMB8), KSTR2_MYCTU (P9WMB9), KSTR2_RHOJR (Q0S7V2), 
KSTR_MYCS2  (A0R528), KSTR_MYCTU  (P96856), KSTR_RHOJR  (Q0S868), 
LFRR_MYCS2  (A0R5K4), LMRA_BACSU  (O34619), LUXR_VIBHA  (P21308), 
MCE3R_MYCTU (P95251), MFTR_MYCTO  (P9WMB6), MFTR_MYCTU  (P9WMB7), 
NEMR_ECOL6  (P67431), NEMR_ECOLI  (P67430), NICS_PSEPK  (Q88FX7), 
RAAS_MYCTU  (O86312), RCDA_ECOLI  (P75811), RUTR_ECO57  (Q8X4Z7), 
RUTR_ECOL6  (P0ACU3), RUTR_ECOLI  (P0ACU2), RUTR_SHIFL  (P0ACU4), 
SLMA_ALIF1  (Q5E8M7), SLMA_ALIFM  (B5FFF4), SLMA_ALTMD  (F2G1U7), 
SLMA_COLP3  (Q48AG4), SLMA_IDILO  (Q5QZB7), SLMA_MARMS  (A6VSX5), 
SLMA_MARN8  (A1U6F3), SLMA_PASMU  (Q9CLQ9), SLMA_SHEAM  (A1S2C9), 
SLMA_SHEB2  (B8E4J2), SLMA_SHEB5  (A3CZJ3), SLMA_SHEB8  (A6WIA3), 
SLMA_SHEB9  (A9KY01), SLMA_SHEDO  (Q12SF8), SLMA_SHEFN  (Q07WF8), 
SLMA_SHEHH  (B0TQK8), SLMA_SHELP  (A3QIQ2), SLMA_SHEON  (Q8E9L9), 
SLMA_SHEPA  (A8H9B3), SLMA_SHEPC  (A4Y2K8), SLMA_SHEPW  (B8CM26), 
SLMA_SHESA  (A0L1S2), SLMA_SHESH  (A8FQ72), SLMA_SHESM  (Q0HE53), 
SLMA_SHESR  (Q0HZU6), SLMA_SHESW  (A1REU1), SLMA_SHEWM  (B1KL08), 
SLMA_VIBA3  (B7VHK0), SLMA_VIBC1  (A7MSP5), SLMA_VIBCH  (Q9KVD2), 
SLMA_VIBPA  (Q87T90), SLMA_VIBVU  (Q8DDX7), SLMA_VIBVY  (Q7MPT0), 
Y097_STAAR  (Q6GKL1), Y1255_MYCTO (P9WMD4), Y1255_MYCTU (P9WMD5), 
Y1816_MYCTO (P9WMC8), Y1816_MYCTU (P9WMC9), Y1846_MYCBO (P67439), 
Y196_MYCTO  (P9WME0), Y196_MYCTU  (P9WME1), Y472_MYCTO  (P9WMD8), 
Y472_MYCTU  (P9WMD9), Y6555_BACAN (Q9RMY4), Y681_MYCTU  (O53789), 
YCNC_BACSU  (P94423), YDES_BACSU  (P96676), YDGC_BACSU  (P96701), 
YDH1_XANAU  (P22645), YEZE_BACSU  (Q7WY76), YFIR_BACSU  (O31560), 
YJDC_ECOL6  (P0ACU8), YJDC_ECOLI  (P0ACU7), YJDC_SHIFL  (P0ACU9), 
YOBS_BACSU  (O34892), YPB3_LACLL  (P42097), YVAF_BACSU  (O32228), 
YVDT_BACSU  (O07001), YVKB_BACSU  (O34643), YWCC_BACSU  (P39601), 
YXAF_BACSU  (P42105), YXBF_BACSU  (P46330)
» more

PDB
[Detailed view]
126 PDB

1A6I; 1BJZ; 1JT0; 1JT6; 1JTX; 1JTY; 1JUM; 1JUP; 1JUS; 1ORK; 1QPI; 1QVT; 1QVU; 1RKW; 1RPW; 2DTZ; 2FJ1; 2G0E; 2GBY; 2HQ5; 2NS7; 2NS8; 2O7O; 2QOP; 2TCT; 2TRT; 2UXH; 2UXI; 2UXO; 2UXP; 2UXU; 2VKE; 2VKV; 2VPR; 2X6O; 2X9D; 2XB5; 2XDN; 2XGC; 2XGD; 2XGE; 2XPU; 2XPV; 2XPW; 2XRL; 3BCG; 3BQZ; 3BR0; 3BR1; 3BR2; 3BR3; 3BR5; 3BR6; 3BT9; 3BTC; 3BTI; 3BTJ; 3BTL; 3FK6; 3FK7; 3NXC; 3PM1; 3QKX; 3VVX; 3VVY; 3VVZ; 3VW0; 3VW1; 3VW2; 3ZQF; 3ZQG; 3ZQH; 3ZQI; 4ABZ; 4AC0; 4AUX; 4B1R; 4B3A; 4D7M; 4D7N; 4GCK; 4GFL; 4V2F; 4V2G; 5FKK; 5FKL; 5FKM; 5FKN; 5FKO; 5HBU; 5HSZ; 5K58; 5MRU; 6AYI; 6FPL; 6FPM; 6FTS; 6IE8; 6IE9; 6KO7; 6KO8; 6KO9; 6MJ1; 6OF0; 6QJW; 6QJX; 6RBL; 6RBM; 6RCR; 6RGX; 6SY4; 6SY6; 6YR1; 6YR2; 7JNP; 7JU3; 7K1A; 7K1C; 7KD8; 7N4Z; 7N53; 7N54; 8FW0; 8FW3; 8FW8; 8SSH
» more