Home  |  Contact
PROSITE documentation PDOC00955 [for PROSITE entry PS01241]

Link domain signature and profile





Description

The Link domain [1] is a hyaluronan(HA)-binding region found in proteins of vertebrates that are involved in the assembly of extracellular matrix, cell adhesion, and migration. It is about 100 amino acids in length. The structure has been shown [2] to consist of two α helices and two antiparallel β sheets arranged around a large hydrophobic core similar to that of C-type lectin <See PDOC00537>. As shown in the schematic representation this domain contains four conserved cysteines involved in two disulfide bonds.

                              +----------+
                              |          |
                  ************|***********
              xxxxCxxxxxxxxxxxCxxxxxxxxxxCxxxxxxxxxxxxxxxCxxxxx
                  |                                      |
                  +--------------------------------------+
'C': conserved cysteine involved in a disulfide bond.
'*': position of the pattern.

The Link domain has also been termed HABM [1] (HA binding module) and PTR [3] (proteoglycan tandem repeat). Proteins with such a domain are listed below:

  • The cartilage link protein (LP), a proteoglycan that togethers with HA and aggrecan forms multimolecular aggregates. It consists of an Ig-like V-type domain and two copies of the Link domain.
  • The proteoglycans aggrecan, brevican, neurocan and versican, which are expressed in the CNS. These proteins are composed of an Ig-like V-type region, two or four (only in aggrecan) Link domains, up to two EGF-like repeats, a variable length domain containing the site of attachments of the sugars, followed, in the C-terminal by a C-type lectin and a Sushi domain.
  • CD44 antigen. The main cell surface receptor for HA. CD44 is known by many different names and also exists in many different forms due to extensive alternative splicing of its 19 exons. It contains a single N-terminal Link domain, which has been shown to be involved in HA-binding [4].
  • Tumor necrosis factor-inducible protein TSG-6. It is possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorgenesis. It contains a Link domain and a CUB domain.

We developed a signature pattern for this domain, which is located in the middle of the sequence and covers the first three conserved cysteines. We also developed a profile, which covers the entire Link domain.

PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see https://prosite.expasy.org/prosite_license.html --------------------------------------------------------------------------------.

Last update:

December 2004 / Pattern and text revised.

-------------------------------------------------------------------------------

Technical section

PROSITE methods (with tools and information) covered by this documentation:

LINK_1, PS01241; Link domain signature  (PATTERN)

LINK_2, PS50963; Link domain profile  (MATRIX)


References

1AuthorsBarta E. Deak F. Kiss I.
TitleEvolution of the hyaluronan-binding module of link protein.
SourceBiochem. J. 292:947-949(1993).
PubMed ID8318021

2AuthorsKohda D. Morton C.J. Parkar A.A. Hatanaka H. Inagaki F.M. Campbell I.D. Day A.J.
TitleSolution structure of the link module: a hyaluronan-binding domain involved in extracellular matrix stability and cell migration.
SourceCell 86:767-775(1996).
PubMed ID8797823

3AuthorsBrisset N.C. Perkins S.J.
SourceFEBS Lett. 388:211-216(1996).

4AuthorsPeach R.J. Hollenbaugh D. Stamenkovic I. Aruffo A.
TitleIdentification of hyaluronic acid binding sites in the extracellular domain of CD44.
SourceJ. Cell Biol. 122:257-264(1993).
PubMed ID8314845



PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see prosite_license.html.

Miscellaneous

View entry in original PROSITE document format
View entry in raw text format (no links)