We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS01332
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PURL: https://purl.expasy.org/prosite/signature/PS01332
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_RRF2_1 |
| Accession [info] | PS01332 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUL-1999 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC01035 |
Name and characterization of the entry
| Description [info] | Rrf2-type HTH domain signature. |
| Pattern [info] |
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF]. |
Numerical results [info]
| Total number of hits | 139 in 139 different sequences |
| Number of true positive hits | 138 in 138 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 20 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.28 % |
| Recall (true positives / (true positives + false negatives)) | 87.34 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
138 sequences
AAU3_RHIME (Q9R9M8), BADM_RHOPA (O07465), CYMR_BACSU (O34527), ISCR_ALISL (B6EGX4), ISCR_CERS4 (Q3J0R9), ISCR_CITK8 (A8AD51), ISCR_CROS8 (A7MGX6), ISCR_ECO24 (A7ZPX5), ISCR_ECO27 (B7UGX7), ISCR_ECO45 (B7MIM1), ISCR_ECO55 (B7LDC3), ISCR_ECO57 (P0AGL0), ISCR_ECO5E (B5Z105), ISCR_ECO7I (B7NRI0), ISCR_ECO81 (B7MYG4), ISCR_ECO8A (B7M7N4), ISCR_ECOBW (C4ZXA6), ISCR_ECODH (B1XB06), ISCR_ECOHS (A8A337), ISCR_ECOK1 (A1AE68), ISCR_ECOL5 (Q0TEV4), ISCR_ECOL6 (P0AGK9), ISCR_ECOLC (B1IWD0), ISCR_ECOLI (P0AGK8), ISCR_ECOLU (B7N6B8), ISCR_ECOSE (B6I5A3), ISCR_ECOSM (B1LNI7), ISCR_ECOUT (Q1R8K1), ISCR_EDWI9 (C5BEU6), ISCR_ENT38 (A4WDB2), ISCR_ERWT9 (B2VI31), ISCR_ESCF3 (B7LJQ3), ISCR_KLEP3 (B5XNJ6), ISCR_KLEP7 (A6TCF2), ISCR_PECAS (Q6D258), ISCR_PECCP (C6DBJ2), ISCR_PHOLL (Q7N223), ISCR_PHOPR (Q6LU63), ISCR_SALA4 (B5F1C1), ISCR_SALAR (A9MHJ3), ISCR_SALCH (Q57LG8), ISCR_SALDC (B5FR87), ISCR_SALEP (B5R5A3), ISCR_SALG2 (B5RD13), ISCR_SALHS (B4TDB7), ISCR_SALNS (B4T1C0), ISCR_SALPA (Q5PNG2), ISCR_SALPB (A9N1X3), ISCR_SALPC (C0PYK6), ISCR_SALPK (B5BAW5), ISCR_SALSV (B4TRX7), ISCR_SALTI (Q8XF25), ISCR_SALTY (Q7CQ10), ISCR_SERP5 (A8GHY4), ISCR_SHIB3 (B2TXV6), ISCR_SHIBS (Q31XV9), ISCR_SHIDS (Q32D33), ISCR_SHIF8 (Q0T1Y8), ISCR_SHIFL (P0AGL1), ISCR_SHISS (Q3YZ21), ISCR_VIBA3 (B7VJS5), ISCR_VIBC1 (A7MU47), ISCR_VIBCH (Q9KTY3), ISCR_VIBPA (Q87S29), ISCR_VIBVU (Q8DEY6), ISCR_VIBVY (Q7MNG3), ISCR_XENNA (Q8GLE9), ISCR_YERE8 (A1JKQ1), ISCR_YERP3 (A7FFX0), ISCR_YERPA (Q1C5G9), ISCR_YERPE (Q0WD07), ISCR_YERPG (A9R819), ISCR_YERPN (Q1CKB0), ISCR_YERPP (A4TMV5), ISCR_YERPS (Q667Y0), NSRR_ALIF1 (Q5E2D6), NSRR_ALIFM (B5FBQ6), NSRR_BACLD (Q65M01), NSRR_BACSU (O07573), NSRR_ECO24 (A7ZV48), NSRR_ECO27 (B7UQI7), NSRR_ECO45 (B7MLI3), NSRR_ECO55 (B7LC37), NSRR_ECO57 (P0AF65), NSRR_ECO5E (B5Z2I4), NSRR_ECO7I (B7NTN4), NSRR_ECO81 (B7MSJ6), NSRR_ECO8A (B7M8T8), NSRR_ECOBW (C4ZR55), NSRR_ECODH (B1XDS9), NSRR_ECOHS (A8A7S3), NSRR_ECOK1 (A1AJ83), NSRR_ECOL5 (Q0T9L5), NSRR_ECOL6 (P0AF64), NSRR_ECOLC (B1IT28), NSRR_ECOLI (P0AF63), NSRR_ECOLU (B7NGB2), NSRR_ECOSE (B6I282), NSRR_ECOSM (B1LQJ8), NSRR_ECOUT (Q1R382), NSRR_ENT38 (A4W5R9), NSRR_ESCF3 (B7LLW0), NSRR_GEOKA (Q5KZ63), NSRR_HALH5 (Q9RC41), NSRR_KLEP3 (B5Y324), NSRR_KLEP7 (A6TH94), NSRR_PECAS (Q6D125), NSRR_PECCP (C6DE26), NSRR_PHOLL (Q7MYU4), NSRR_PHOPR (Q6LM38), NSRR_SHIB3 (B2TY53), NSRR_SHIBS (Q31TA8), NSRR_SHIDS (Q328F7), NSRR_SHIF8 (Q0SXA4), NSRR_SHIFL (P0AF66), NSRR_SHISS (Q3YUG5), NSRR_SHOC1 (Q5WL64), NSRR_VIBC1 (A7MX86), NSRR_VIBPA (P40610), NSRR_YERE8 (A1JIS1), NSRR_YERP3 (A7FMX3), NSRR_YERPA (Q1C106), NSRR_YERPE (Q0WJT1), NSRR_YERPN (Q1CEG1), NSRR_YERPS (Q66FA9), RRF2_NITV2 (P33395), Y1287_MYCTO (P9WME2), Y1287_MYCTU (P9WME3), Y1318_MYCBO (P67160), Y1378_NEIMB (P0A0Z0), Y1593_NEIMA (P0A0Y9), Y2142_RHOCB (O68025), Y268_AQUAE (O66625), Y379_HAEIN (P44675), Y846_SYNY3 (Q55433), YFFB_LACLA (Q48660), YOR2_AZOVI (O69219), YWGB_BACSU (P71047)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
20 sequences
ISCR_SODGM (Q2NS30), NSRR_ALISL (B6EMP9), NSRR_OCEIH (Q8ETG9), NSRR_PROMH (B4F272), NSRR_SALA4 (B5F393), NSRR_SALCH (Q57GL3), NSRR_SALEP (B5R0P4), NSRR_SALG2 (B5R9C4), NSRR_SALHS (B4TFB2), NSRR_SALPA (Q5PL57), NSRR_SALPB (A9N4Z2), NSRR_SALPK (B5BKI6), NSRR_SALSV (B4TSF8), NSRR_SALTI (Q8Z183), NSRR_SALTY (Q8ZKA3), NSRR_SERP5 (A8G8V5), NSRR_STRCO (Q9L132), NSRR_VIBVU (Q8DCU1), NSRR_VIBVY (Q7MH10), YWNA_BACSU (P71036)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y241_METJA (Q57693) |
| PDB [Detailed view] |
4 PDB
pdb_00002y75; pdb_00004hf0; pdb_00004hf1; pdb_00004hf2 |