Due to maintenance work, this service will be unavailable from
Mon Nov 11 17:30 until
Tue Nov 12 09:00
CET.
Apologies for the inconvenience.
PROSITE entry PS01332
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_RRF2_1 |
| Accession [info] | PS01332 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUL-1999 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC01035 |
Name and characterization of the entry
| Description [info] | Rrf2-type HTH domain signature. |
| Pattern [info] |
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF]. |
Numerical results [info]
| Total number of hits | 139 in 139 different sequences |
| Number of true positive hits | 138 in 138 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 20 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.28 % |
| Recall (true positives / (true positives + false negatives)) | 87.34 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
138 sequences
AAU3_RHIME (Q9R9M8), BADM_RHOPA (O07465), CYMR_BACSU (O34527), ISCR_ALISL (B6EGX4), ISCR_CERS4 (Q3J0R9), ISCR_CITK8 (A8AD51), ISCR_CROS8 (A7MGX6), ISCR_ECO24 (A7ZPX5), ISCR_ECO27 (B7UGX7), ISCR_ECO45 (B7MIM1), ISCR_ECO55 (B7LDC3), ISCR_ECO57 (P0AGL0), ISCR_ECO5E (B5Z105), ISCR_ECO7I (B7NRI0), ISCR_ECO81 (B7MYG4), ISCR_ECO8A (B7M7N4), ISCR_ECOBW (C4ZXA6), ISCR_ECODH (B1XB06), ISCR_ECOHS (A8A337), ISCR_ECOK1 (A1AE68), ISCR_ECOL5 (Q0TEV4), ISCR_ECOL6 (P0AGK9), ISCR_ECOLC (B1IWD0), ISCR_ECOLI (P0AGK8), ISCR_ECOLU (B7N6B8), ISCR_ECOSE (B6I5A3), ISCR_ECOSM (B1LNI7), ISCR_ECOUT (Q1R8K1), ISCR_EDWI9 (C5BEU6), ISCR_ENT38 (A4WDB2), ISCR_ERWT9 (B2VI31), ISCR_ESCF3 (B7LJQ3), ISCR_KLEP3 (B5XNJ6), ISCR_KLEP7 (A6TCF2), ISCR_PECAS (Q6D258), ISCR_PECCP (C6DBJ2), ISCR_PHOLL (Q7N223), ISCR_PHOPR (Q6LU63), ISCR_SALA4 (B5F1C1), ISCR_SALAR (A9MHJ3), ISCR_SALCH (Q57LG8), ISCR_SALDC (B5FR87), ISCR_SALEP (B5R5A3), ISCR_SALG2 (B5RD13), ISCR_SALHS (B4TDB7), ISCR_SALNS (B4T1C0), ISCR_SALPA (Q5PNG2), ISCR_SALPB (A9N1X3), ISCR_SALPC (C0PYK6), ISCR_SALPK (B5BAW5), ISCR_SALSV (B4TRX7), ISCR_SALTI (Q8XF25), ISCR_SALTY (Q7CQ10), ISCR_SERP5 (A8GHY4), ISCR_SHIB3 (B2TXV6), ISCR_SHIBS (Q31XV9), ISCR_SHIDS (Q32D33), ISCR_SHIF8 (Q0T1Y8), ISCR_SHIFL (P0AGL1), ISCR_SHISS (Q3YZ21), ISCR_VIBA3 (B7VJS5), ISCR_VIBC1 (A7MU47), ISCR_VIBCH (Q9KTY3), ISCR_VIBPA (Q87S29), ISCR_VIBVU (Q8DEY6), ISCR_VIBVY (Q7MNG3), ISCR_XENNA (Q8GLE9), ISCR_YERE8 (A1JKQ1), ISCR_YERP3 (A7FFX0), ISCR_YERPA (Q1C5G9), ISCR_YERPE (Q0WD07), ISCR_YERPG (A9R819), ISCR_YERPN (Q1CKB0), ISCR_YERPP (A4TMV5), ISCR_YERPS (Q667Y0), NSRR_ALIF1 (Q5E2D6), NSRR_ALIFM (B5FBQ6), NSRR_BACLD (Q65M01), NSRR_BACSU (O07573), NSRR_ECO24 (A7ZV48), NSRR_ECO27 (B7UQI7), NSRR_ECO45 (B7MLI3), NSRR_ECO55 (B7LC37), NSRR_ECO57 (P0AF65), NSRR_ECO5E (B5Z2I4), NSRR_ECO7I (B7NTN4), NSRR_ECO81 (B7MSJ6), NSRR_ECO8A (B7M8T8), NSRR_ECOBW (C4ZR55), NSRR_ECODH (B1XDS9), NSRR_ECOHS (A8A7S3), NSRR_ECOK1 (A1AJ83), NSRR_ECOL5 (Q0T9L5), NSRR_ECOL6 (P0AF64), NSRR_ECOLC (B1IT28), NSRR_ECOLI (P0AF63), NSRR_ECOLU (B7NGB2), NSRR_ECOSE (B6I282), NSRR_ECOSM (B1LQJ8), NSRR_ECOUT (Q1R382), NSRR_ENT38 (A4W5R9), NSRR_ESCF3 (B7LLW0), NSRR_GEOKA (Q5KZ63), NSRR_HALH5 (Q9RC41), NSRR_KLEP3 (B5Y324), NSRR_KLEP7 (A6TH94), NSRR_PECAS (Q6D125), NSRR_PECCP (C6DE26), NSRR_PHOLL (Q7MYU4), NSRR_PHOPR (Q6LM38), NSRR_SHIB3 (B2TY53), NSRR_SHIBS (Q31TA8), NSRR_SHIDS (Q328F7), NSRR_SHIF8 (Q0SXA4), NSRR_SHIFL (P0AF66), NSRR_SHISS (Q3YUG5), NSRR_SHOC1 (Q5WL64), NSRR_VIBC1 (A7MX86), NSRR_VIBPA (P40610), NSRR_YERE8 (A1JIS1), NSRR_YERP3 (A7FMX3), NSRR_YERPA (Q1C106), NSRR_YERPE (Q0WJT1), NSRR_YERPN (Q1CEG1), NSRR_YERPS (Q66FA9), RRF2_NITV2 (P33395), Y1287_MYCTO (P9WME2), Y1287_MYCTU (P9WME3), Y1318_MYCBO (P67160), Y1378_NEIMB (P0A0Z0), Y1593_NEIMA (P0A0Y9), Y2142_RHOCB (O68025), Y268_AQUAE (O66625), Y379_HAEIN (P44675), Y846_SYNY3 (Q55433), YFFB_LACLA (Q48660), YOR2_AZOVI (O69219), YWGB_BACSU (P71047)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
20 sequences
ISCR_SODGM (Q2NS30), NSRR_ALISL (B6EMP9), NSRR_OCEIH (Q8ETG9), NSRR_PROMH (B4F272), NSRR_SALA4 (B5F393), NSRR_SALCH (Q57GL3), NSRR_SALEP (B5R0P4), NSRR_SALG2 (B5R9C4), NSRR_SALHS (B4TFB2), NSRR_SALPA (Q5PL57), NSRR_SALPB (A9N4Z2), NSRR_SALPK (B5BKI6), NSRR_SALSV (B4TSF8), NSRR_SALTI (Q8Z183), NSRR_SALTY (Q8ZKA3), NSRR_SERP5 (A8G8V5), NSRR_STRCO (Q9L132), NSRR_VIBVU (Q8DCU1), NSRR_VIBVY (Q7MH10), YWNA_BACSU (P71036)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y241_METJA (Q57693) |
| PDB [Detailed view] |
4 PDB
2Y75; 4HF0; 4HF1; 4HF2 |