PROSITE entry PS51932
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General information about the entry
| Entry name [info] | BMV |
| Accession [info] | PS51932 |
| Entry type [info] | MATRIX |
| Date [info] |
07-OCT-2020 CREATED;
07-OCT-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51932 |
| Associated ProRule [info] | PRU01280 |
Name and characterization of the entry
| Description [info] | Bacterial microcompartment vertex (BMV) domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=83; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=78; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5402834; R2=0.0058944; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1181; N_SCORE=9.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=672; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-28; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='M'; M= -61, -69, -83, -73, -51, -75, -54, -35, -66, -29, 145, -70, -38, -58, -64, -71, -60, -34, -74, -50; /M: SY='Q'; M= -65, -78, -48, -28, 18, -76, 17, 40, 29, -7, -36, -19, -72, 55, 35, -61, -27, -24, -14, 33; /M: SY='L'; M= -51, -71, -82, -76, -12, -84, -34, 52, -54, 64, 20, -76, -51, -53, -48, -71, -9, 19, -73, -38; /M: SY='G'; M= 67, 21, -67, -67, -76, 67, -19, -73, -66, -72, -12, -57, -68, -63, -71, -34, -59, -50, -9, -39; /M: SY='R'; M= -62, -77, -48, 7, -72, -74, -25, -17, 58, -41, -30, -54, -68, 20, 75, -57, 17, -8, -76, -63; /M: SY='V'; M= -53, -67, -83, -78, -53, -85, -85, 30, -75, -29, -41, -78, -78, -77, -77, -67, -51, 98, -86, -61; /M: SY='I'; M= -47, -25, -28, -25, -55, -51, -51, 73, -41, -12, -15, -68, -73, -39, -5, -55, 18, 51, -79, -60; /M: SY='G'; M= -39, -77, -19, -59, -83, 99, -69, -90, -38, -85, -75, -50, -68, -65, -27, -35, -67, -83, -74, -77; /M: SY='T'; M= -40, -20, -22, -43, -72, -63, 35, -71, 21, -61, -63, 44, -15, 28, 33, 31, 56, -60, -82, -24; /M: SY='V'; M= 10, -38, -81, -75, -53, -80, -80, 46, -74, 13, -11, -75, -76, -73, -76, -64, -15, 77, -81, -60; /M: SY='W'; M= -57, -71, -77, -72, -54, -77, -81, -8, -67, -50, -51, -43, -74, -28, -28, -43, 47, 75, 110, -53; /M: SY='S'; M= 61, 49, -65, -62, -29, -39, -66, -62, -63, 0, -18, -40, -69, -58, -67, 64, -25, -45, -78, -66; /M: SY='T'; M= -20, -63, -12, -59, -69, -42, -66, -61, -58, -66, -62, -47, -27, -60, -65, 31, 103, -34, -87, -66; /M: SY='R'; M= -12, -56, -50, -30, -40, -72, 27, -1, 34, -39, -55, -38, -45, 48, 49, -9, -1, 35, -78, -48; /M: SY='K'; M= -11, -2, -57, -28, -77, -69, -29, -51, 90, -60, -32, -38, -66, 7, 46, -26, -39, -71, -74, -65; /M: SY='H'; M= -18, -20, 42, 8, -63, -68, 98, -37, -58, -5, -40, 23, -37, -31, -60, -2, -22, 0, -83, 18; /M: SY='P'; M= 4, -80, 37, 49, -50, -54, 8, -76, -7, -78, -69, -32, 81, 0, -34, -7, -15, -74, -81, -71; /M: SY='S'; M= 15, -27, -2, 4, -45, 29, -42, -56, 10, -59, -67, 1, -35, -12, -16, 58, 11, -56, -12, -37; /M: SY='L'; M= -67, -71, -83, -76, 31, -84, -11, -6, -75, 74, 41, -79, -82, -70, -73, -75, -63, -13, -62, 35; /M: SY='E'; M= 11, -74, -2, 39, -74, -20, 0, -21, 25, -52, -29, 13, 12, 24, 13, -5, 1, 4, -80, -67; /M: SY='G'; M= -39, -75, -36, -60, -79, 88, 34, -85, -65, -73, -34, 20, -14, -41, -57, 7, -44, -80, -77, -42; /M: SY='W'; M= 15, 11, -4, -35, -26, 16, 29, -35, 24, 4, -16, -31, -29, 21, 8, -21, -16, -15, 30, 8; /M: SY='K'; M= -18, -75, -58, -47, -76, -69, -29, -74, 83, -74, -64, -32, -14, -26, 59, -15, 16, -35, -76, -65; /M: SY='L'; M= -67, -71, -85, -77, 40, -84, -69, 13, -76, 74, 30, -80, -82, -42, -74, -75, -42, -26, 42, -14; /M: SY='L'; M= -51, -22, -80, -70, -46, -82, -65, -24, -22, 72, 52, -76, -80, -3, -2, -60, -61, 19, -72, -14; /M: SY='I'; M= -47, -4, -79, -13, -36, -84, -74, 54, -71, 44, 28, -76, -77, -69, -29, -70, -29, 51, -77, -57; /M: SY='V'; M= 4, 23, -80, -75, -55, -48, -80, 33, -73, 0, 8, -74, -76, -73, -75, -63, -9, 80, -83, -62; /M: SY='Q'; M= -22, -79, -6, 48, -80, -69, -23, -59, 22, -58, -61, -8, -65, 90, 24, -40, -20, -10, -77, -65; /M: SY='P'; M= -42, -52, 7, -25, -29, -52, -66, -24, -27, -12, 20, -44, 97, -38, 8, -45, -2, -8, -78, -46; /M: SY='L'; M= -49, 2, -7, -32, -32, -63, -70, 36, -60, 58, 6, -73, -46, -16, -38, -57, -20, 29, -36, -19; /I: I=-16; MD=-40; /M: SY='D'; M= -37, -24, 68, -11, -79, 2, -37, -63, -37, -29, -27, 52, -73, -60, -35, -4, 19, -58, -93, -29; D=-16; /I: I=-16; MI=0; MD=-40; IM=0; DM=-40; /M: SY='E'; M= 14, -47, 11, 25, -79, -30, -15, -36, -8, -26, 15, -9, 16, 3, -28, -16, -20, -17, -8, -50; D=-16; /I: I=-16; DM=-40; /M: SY='D'; M= -20, -83, 39, 15, -56, -5, -33, -83, 19, -53, -74, 31, -21, 19, 22, -11, -14, -70, -88, -56; D=-16; /I: I=-16; DM=-40; /M: SY='G'; M= -34, -82, -3, -9, -37, 55, -15, -54, -14, -9, -21, 3, -24, 1, 7, -26, -32, -41, -82, -43; D=-16; /I: I=-16; DM=-40; /M: SY='Q'; M= -12, -81, -12, 43, -39, -16, -61, -59, 17, -50, -33, 13, -25, 48, 3, 7, -32, -27, -82, -34; D=-16; /I: I=-16; DM=-40; /M: SY='P'; M= -4, -34, 0, 20, -57, 1, -15, -36, -15, -39, -32, -1, 75, -48, -25, -4, -33, -35, -83, -35; D=-16; /I: I=-16; DM=-40; /M: SY='D'; M= 8, -73, 41, -11, -70, 4, -28, -5, 21, -13, -10, -16, -10, -2, 5, 6, 18, -5, -80, -47; /M: SY='G'; M= 1, -75, -5, 6, -80, 80, -65, -81, -9, -72, -71, -22, -13, -31, -7, -1, -22, -51, -77, -74; /M: SY='D'; M= -16, -76, 47, 46, -17, 0, -23, -76, 15, -65, -27, 13, 14, 13, 7, 6, 0, -64, -80, -43; /M: SY='P'; M= -9, -13, -12, 10, -23, -59, -32, -15, -28, -9, -19, -37, 68, 0, -24, 0, 33, 2, -74, 12; /M: SY='L'; M= -14, -72, -39, -13, 27, -78, -15, 33, -44, 37, 26, -47, -47, 7, -19, -37, -13, 24, -10, 2; /M: SY='V'; M= -25, -69, -82, -77, -51, -83, -82, 54, -75, 16, -39, -77, -77, -75, -77, -40, -34, 80, -81, -59; /M: SY='A'; M= 83, 30, -71, -64, -70, -31, -72, -41, -65, -60, -18, -64, -30, -63, -70, -21, -41, 34, -79, -70; /M: SY='V'; M= 14, -15, -78, -74, 8, -76, -72, 35, -71, 19, 5, -72, -76, -70, -73, -37, 13, 53, 24, 28; /M: SY='D'; M= -67, -11, 117, -22, -87, -65, -54, -85, -55, -84, -83, -36, -67, -54, -64, -55, -31, -82,-103, -71; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='P'; M= 12, -6, -4, 5, -48, -35, -19, -15, -27, -14, -2, -10, 42, 12, 2, 15, 39, -26, -18, -17; /M: SY='V'; M= 4, -10, -80, -75, -19, -17, -75, 29, -73, 39, 12, -74, -77, -47, -54, -28, -56, 61, 4, -58; /M: SY='G'; M= -20, -76, -5, -66, -82, 92, -42, -86, -54, -83, -40, -1, -68, 20, -21, -30, -65, -81, -76, -74; /M: SY='A'; M= 83, 27, -66, -26, -73, -44, -37, -42, -62, -65, -60, -61, -67, -59, -35, 15, -11, 4, -79, -70; /M: SY='G'; M= -9, -76, -9, -66, -81, 89, -67, -85, -8, -82, -72, -38, -15, -34, -6, -4, -45, -62, -75, -75; /M: SY='I'; M= -18, -75, -6, 34, -55, -20, -36, 40, -33, -27, -16, -34, 39, -17, 12, -46, -10, 37, -80, -65; /M: SY='G'; M= -51, -76, 9, -30, -82, 94, 13, -88, -65, -84, -74, -41, -67, -63, -46, -20, -13, -81, -77, -74; /M: SY='D'; M= -29, -35, 84, 65, -82, -41, -10, -75, -36, -75, -72, -46, -63, 9, -58, -5, -27, -10, -89, -69; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='W'; M= -47, -5, -53, -36, -36, -48, 6, 32, -15, 30, 15, -67, -74, -17, 24, -51, 23, 16, 62, 17; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='V'; M= -45, -11, -83, -78, -53, -84, -84, 35, -75, -33, -20, -78, -78, -77, -77, -67, -52, 94, -84, -23; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='L'; M= 3, -3, -81, -76, 15, -37, -31, 34, -74, 58, 47, -76, -78, -69, -74, -69, -47, -4, 9, 11; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='V'; M= -46, 8, -54, -74, 22, -80, -73, 40, -55, 17, -13, -72, -76, -39, -73, -26, 18, 57, 29, 20; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='T'; M= 29, -7, -14, 8, -67, -39, -67, 8, -60, -48, -38, -19, -66, -41, -55, 35, 58, 28, -83, -66; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='E'; M= -4, -52, 22, 46, -58, 5, -38, -49, -24, -45, -65, -37, -64, 29, 9, 28, 42, -41, -13, -29; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='G'; M= -2, -75, 4, -51, -79, 91, -67, -85, -66, -83, -73, -4, -52, -63, -60, -1, -63, -79, -8, -22; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='S'; M= 20, -69, -22, -8, -56, 17, -14, -73, -9, -50, -47, 8, -7, -51, 15, 68, -4, -67, -78, -26; /M: SY='A'; M= 51, -68, -14, 40, -73, -5, -5, -68, -43, -62, -65, -19, -31, -30, -33, 45, 1, -13, -6, -31; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='A'; M= 83, -11, -69, -62, -70, -31, -70, -8, -62, -36, -57, -62, -68, -60, -13, -1, -18, 9, -77, -69; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='R'; M= 29, -75, -42, -37, -51, -24, -11, -57, -14, -42, -23, -36, -72, 13, 85, 2, -23, -23, -76, -32; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='Q'; M= 13, -41, 10, 16, -4, -48, 16, -14, -6, -25, 27, 0, -69, 55, 16, -12, -29, -14, 25, -4; /M: SY='P'; M= 40, -70, -7, -42, -62, -20, -33, 11, -65, 4, 40, -51, 42, -63, -70, 2, 13, 9, 7, -18; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='F'; M= -1, -9, -46, 0, 59, -45, -4, -26, -38, 27, 32, -55, 4, -25, -26, -35, 2, 4, -64, 9; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='G'; M= -6, -17, 13, -13, -4, 52, 31, -56, 17, -31, -65, -2, -20, 7, -9, -9, -23, -44, -75, -7; D=-38; /I: I=-38; DM=-97; /M: SY='P'; M= -37, -7, 40, 7, -42, -2, 29, -48, -8, -32, -14, 21, 42, 0, 4, -3, 23, -24, -83, -51; /I: I=-26; MI=0; MD=-67; IM=0; DM=-67; /M: SY='D'; M= -4, -77, 35, 29, -74, -17, -29, -73, 33, -66, -67, 2, 32, 2, 16, -2, 8, -29, 7, -2; D=-26; /I: I=-26; MI=0; MD=-67; IM=0; DM=-67; /M: SY='N'; M= -18, -74, 41, -9, 4, -28, 31, -45, 1, -39, 8, 54, 5, 13, -15, 7, 8, -68, -79, -6; D=-26; /I: I=-26; DM=-67; /M: SY='V'; M= 25, -19, -32, -44, -42, -48, -67, 6, 18, -16, -10, -37, -1, -31, -13, 25, 28, 32, -78, -23; D=-26; /I: I=-26; MI=0; MD=-67; IM=0; DM=-67; /M: SY='P'; M= -9, -45, -40, -57, -80, -67, -69, -35, -63, -44, -31, -70, 116, -65, -46, -15, -24, -29, -79, -78; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='V'; M= 7, -29, -33, -73, -35, -52, -78, 57, -72, -9, -44, -69, -74, -71, -75, -3, 7, 66, -80, -45; /M: SY='D'; M= -38, -14, 101, -32, -81, -58, -15, -56, -40, -52, -44, -12, -69, -15, 48, -57, -59, -39, -93, -67; /M: SY='A'; M= 65, -4, -44, -40, -19, -59, -20, -41, -63, 1, 22, -10, -70, -48, -50, 14, 7, -10, 62, -24; /M: SY='A'; M= 42, 17, -43, -67, -27, -36, -66, -1, -66, 3, 1, -63, -71, -33, -69, 12, 32, 31, -20, 35; /M: SY='I'; M= -18, -10, -77, -54, -54, -65, -79, 80, -72, -20, -41, -5, -74, -72, -51, -37, -8, 55, -79, -60; /M: SY='V'; M= 21, 4, -49, -55, -34, -55, -77, 53, -72, 8, 4, -71, -75, -45, -74, -21, -17, 61, -79, -60; /M: SY='G'; M= 39, 25, -27, -70, -79, 85, -70, -53, -68, -63, -70, -53, -69, -65, -74, -15, -62, -49, -76, -75; /M: SY='I'; M= -46, -74, -83, -80, -8, -85, -80, 92, -76, 13, -37, -74, -75, -44, -79, -18, -40, 22, -72, -28; /M: SY='V'; M= -32, -71, -47, -34, -52, -61, -80, 67, -74, 10, -6, -75, -34, -51, -77, -68, -55, 70, -80, -59; /M: SY='D'; M= -48, -80, 114, 9, -87, -49, -54, -84, -31, -83, -81, -37, -66, -53, -62, -39, -57, -59,-100, -70; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 18 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | BMV |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
BMCP_HALO1 (D0LHE5), CCML_GLOVI (Q7NIT8), CCML_NOSS1 (Q8YYI2), CCML_SYNE7 (Q03512), CCML_SYNY3 (P72759), CCML_THEVB (Q8DKB4), CSS4A_HALNC (O85043), CSS4A_HYDCU (Q31HD5), CSS4A_PROMP (Q7V2C6), CSS4B_HALNC (O85044), CSS4B_HYDCU (Q31HD4), CSS4B_PROMP (Q7V2C5), EUTN_ECOL6 (P0AEJ9), EUTN_ECOLI (P0AEJ8), EUTN_SALTY (P41792), GRPN_RHOR1 (P0DUM1), PDUN_CITFR (P0DUV6), PDUN_SALTY (Q9XDN3)» more
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| PDB [Detailed view] |
20 PDB
2HD3; 2QW7; 2RCF; 2Z9H; 4I7A; 4JVZ; 4JW0; 4N8F; 4N8X; 5V74; 6JY5; 6MZX; 6MZY; 7CKB; 7CKC; 7WKC; 8B0Y; 8B11; 8B12; 8WXB » more |