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ProRule PRU00470


General rule information [?]

Accession PRU00470
Dates 10-AUG-2005 (Created)
19-NOV-2022 (Last updated, Version 9)
Data class Domain;
Predictors PROSITE; PS51141; ZF_SBP
Name Zinc finger SBP-type
Function DNA-binding
Scope(s) Eukaryota
Embryophyta
Example(s) Q8LFW6 (SPL13_ARATH);

Propagated annotation [?]

Keywords [?]

Zinc-finger
case (<Feature:PS51141:4=[CH]> and <Feature:PS51141:9=[CH]> and <Feature:PS51141:26=[CH]> and <Feature:PS51141:29=[CH]>) or (<Feature:PS51141:45=[CH]> and <Feature:PS51141:48=[CH]> and <Feature:PS51141:52=[CH]> and <Feature:PS51141:64=[CH]>)
Zinc
Metal-binding
end case

Features [?]

From: PS51141
Key From To Description Tag Condition FTGroup
case (<Feature:PS51141:4=[C]> and <Feature:PS51141:9=[C]> and <Feature:PS51141:26=[C]> and <Feature:PS51141:29=[H]>) and (<Feature:PS51141:45=[C]> and <Feature:PS51141:48=[C]> and <Feature:PS51141:52=[H]> and <Feature:PS51141:64=[C]>)
ZN_FING from to /note="SBP-type #"
else case (<Feature:PS51141:4=[CH]> and <Feature:PS51141:9=[CH]> and <Feature:PS51141:26=[CH]> and <Feature:PS51141:29=[CH]>) and (<Feature:PS51141:45=[CH]> and <Feature:PS51141:48=[CH]> and <Feature:PS51141:52=[CH]> and <Feature:PS51141:64=[CH]>)
ZN_FING from to /note="SBP-type #; atypical"
else
ZN_FING from to /note="SBP-type #; degenerate"
end case
BINDING 4 4 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 9 9 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 26 26 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 29 29 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 45 45 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 48 48 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 52 52 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 64 64 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2

Additional information [?]

Size range 76-77 amino acids
Related rules None
Fusion None
Repeats 1
Topology Undefined

Copyright

PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see prosite_license.html.



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UniProtKB rule member sequences [?]