Entry: PS00300

General information about the entry

Entry name [info] SRP54
Accession [info] PS00300
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00272

Name and characterization of the entry

Description [info] SRP54-type proteins GTP-binding domain signature.
Pattern [info]
P-[LIVM]-x-[FYL]-[LIVMAT]-[GS]-{Q}-[GS]-[EQ]-x-{K}-x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 134 in 134 different sequences
Number of true positive hits 117 in 117 different sequences
Number of 'unknown' hits 0
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 45
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 87.31 %
Recall (true positives / (true positives + false negatives)) 72.22 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
117 sequences

CFTSY_ARATH (O80842    ), FTSY_AGRFC  (A9CHH2    ), FTSY_AQUAE  (O67066    ), 
FTSY_BACSU  (P51835    ), FTSY_BIFLO  (Q8G736    ), FTSY_BUCAI  (P57137    ), 
FTSY_BUCAP  (Q8KA77    ), FTSY_BUCBP  (Q89B28    ), FTSY_DEIRA  (Q9RS67    ), 
FTSY_DESVH  (Q726P7    ), FTSY_ECOLI  (P10121    ), FTSY_HAEIN  (P44870    ), 
FTSY_HALVD  (D4GYW6    ), FTSY_HELPJ  (Q9ZL80    ), FTSY_HELPY  (O25458    ), 
FTSY_METJA  (Q57739    ), FTSY_MYCBO  (P66843    ), FTSY_MYCGE  (P47539    ), 
FTSY_MYCLE  (O33010    ), FTSY_MYCPN  (P75362    ), FTSY_MYCTO  (P9WGD8    ), 
FTSY_MYCTU  (P9WGD9    ), FTSY_NEIGO  (P14929    ), FTSY_NEIMA  (P57010    ), 
FTSY_NEIMB  (P57011    ), FTSY_NEIMC  (O30391    ), FTSY_RICBR  (Q1RKK5    ), 
FTSY_RICCN  (Q92GB8    ), FTSY_RICFE  (Q4UK46    ), FTSY_RICPR  (O05948    ), 
FTSY_RICTY  (Q68VX4    ), FTSY_STRMU  (Q8CWX8    ), FTSY_SULAC  (P27414    ), 
FTSY_SYNY3  (P73930    ), FTSY_THEAQ  (P83749    ), SR541_ARATH (P37106    ), 
SR541_HORVU (P49968    ), SR541_SOLLC (P49971    ), SR542_ARATH (P49966    ), 
SR542_HORVU (P49969    ), SR542_SOLLC (P49972    ), SR543_ARATH (P49967    ), 
SR543_HORVU (P49970    ), SR54C_ARATH (P37107    ), SRP54_AQUAE (O67615    ), 
SRP54_ARCFU (O29633    ), SRP54_ASPNG (Q00179    ), SRP54_BACSU (P37105    ), 
SRP54_BOVIN (Q2T9U1    ), SRP54_BUCAI (P57473    ), SRP54_BUCAP (Q8K9F7    ), 
SRP54_BUCBP (Q89AE4    ), SRP54_CANAX (O42816    ), SRP54_CANLF (P61010    ), 
SRP54_DICDI (Q75K18    ), SRP54_ECO57 (P0AGD9    ), SRP54_ECOL6 (P0AGD8    ), 
SRP54_ECOLI (P0AGD7    ), SRP54_ENTHI (O15821    ), SRP54_GEOCY (Q8MZJ6    ), 
SRP54_HAEIN (P44518    ), SRP54_HELPJ (Q9ZK62    ), SRP54_HELPY (P56005    ), 
SRP54_HUMAN (P61011    ), SRP54_MACFA (Q4R965    ), SRP54_META3 (A6UWG4    ), 
SRP54_METAC (Q8THD0    ), SRP54_METBF (Q46E01    ), SRP54_METJA (Q57565    ), 
SRP54_METKA (Q8TUY9    ), SRP54_METM5 (A4FVX4    ), SRP54_METM6 (A9A9B0    ), 
SRP54_METM7 (A6VHE0    ), SRP54_METMA (Q8PXF3    ), SRP54_METMP (Q6LX03    ), 
SRP54_METS3 (A5UMY7    ), SRP54_METS5 (A4YHL0    ), SRP54_METST (Q2NE47    ), 
SRP54_METTH (O27376    ), SRP54_METVS (A6UQJ8    ), SRP54_MOUSE (P14576    ), 
SRP54_MYCBO (P66845    ), SRP54_MYCGE (P47294    ), SRP54_MYCMY (Q01442    ), 
SRP54_MYCPN (P75054    ), SRP54_MYCTO (P9WGD6    ), SRP54_MYCTU (P9WGD7    ), 
SRP54_PONAB (Q5R4R6    ), SRP54_PYRAB (Q9V1E8    ), SRP54_PYRFU (Q8U070    ), 
SRP54_PYRHO (O59307    ), SRP54_RAT   (Q6AYB5    ), SRP54_RICBR (Q1RHD6    ), 
SRP54_RICCN (Q92J55    ), SRP54_RICFE (Q4UKH4    ), SRP54_RICPR (Q9ZDZ0    ), 
SRP54_RICTY (Q68XJ4    ), SRP54_SCHPO (P21565    ), SRP54_STRMU (Q54431    ), 
SRP54_SYNE7 (Q55311    ), SRP54_SYNY3 (P74214    ), SRP54_THEAC (Q9HKT0    ), 
SRP54_THEAQ (O07347    ), SRP54_THEGJ (C5A233    ), SRP54_THEKO (Q5JJC8    ), 
SRP54_THEON (B6YSS1    ), SRP54_THEVO (Q979Y8    ), SRP54_YARLI (Q99150    ), 
SRP54_YEAST (P20424    ), SRPRA_BOVIN (Q3MHE8    ), SRPRA_CANLF (P06625    ), 
SRPRA_DICDI (Q54ZR7    ), SRPRA_DROME (Q9U5L1    ), SRPRA_HUMAN (P08240    ), 
SRPRA_MOUSE (Q9DBG7    ), SRPR_SCHPO  (O43032    ), SRPR_YEAST  (P32916    )
» more

UniProtKB/Swiss-Prot
False negative sequences
45 sequences

FLHF_AQUAE  (O67266    ), FLHF_BACSU  (Q01960    ), FLHF_BORBU  (Q44758    ), 
FLHF_CAMJE  (O52908    ), FLHF_HELPJ  (Q9ZM34    ), FLHF_HELPY  (O25679    ), 
FLHF_PSEAE  (Q9I3P8    ), FLHF_PSEPU  (O52256    ), FLHF_TREPA  (Q56339    ), 
FTSY_CHLPN  (Q9Z6T7    ), FTSY_HELM1  (D3UJA7    ), FTSY_METAC  (Q8TIN7    ), 
FTSY_MYCHP  (O32861    ), FTSY_MYCMS  (Q6MTB9    ), FTSY_THEAC  (Q9HJ93    ), 
SRP54_ACIAM (P70722    ), SRP54_AERPE (Q9YB62    ), SRP54_HALLT (B9LT33    ), 
SRP54_HALMA (Q5UY20    ), SRP54_HALS3 (B0R7X3    ), SRP54_HALSA (Q9HMN5    ), 
SRP54_HALVD (Q977V2    ), SRP54_HALWD (Q18EV2    ), SRP54_HYPBU (A2BNB5    ), 
SRP54_METAR (Q0W2G1    ), SRP54_METBU (Q12ZG8    ), SRP54_METLZ (A2STI3    ), 
SRP54_METTP (A0B638    ), SRP54_MYCLE (O33013    ), SRP54_NATPD (Q3IUP1    ), 
SRP54_PYRAE (Q8ZT95    ), SRP54_PYRAR (A4WLQ3    ), SRP54_PYRCJ (A3MWX6    ), 
SRP54_PYRIL (A1RS43    ), SRP54_PYRNV (B1Y9L4    ), SRP54_STAMF (A3DML3    ), 
SRP54_SULAC (O07853    ), SRP54_SULIA (C3N5B0    ), SRP54_SULIK (C4KGX6    ), 
SRP54_SULIL (C3MPN4    ), SRP54_SULIM (C3MYM8    ), SRP54_SULIN (C3NHT9    ), 
SRP54_SULIY (C3NDW4    ), SRP54_SULSO (Q97ZE7    ), SRP54_SULTO (Q971S9    )
» more

UniProtKB/Swiss-Prot
False positive sequences
17 sequences

CSPG2_MOUSE (Q62059    ), CSPG2_RAT   (Q9ERB4    ), DHKM_DICDI  (Q54SK5    ), 
EIF3F_CRYNB (P0CO85    ), EIF3F_CRYNJ (P0CO84    ), METR_HAEIN  (P45349    ), 
PURA_THEMA  (Q9X0I1    ), RDRP_NMV    (P15095    ), SECD_METKA  (Q8TWM4    ), 
SECD_PYRFU  (Q8U4B4    ), SEN54_MOUSE (Q8C2A2    ), SYL1_METS5  (A4YE96    ), 
SYM_HYPNA   (Q0C161    ), SYM_RHOFT   (Q21TB9    ), SYP_PSYIN   (A1SZR1    ), 
Y437_ROSDO  (Q16CZ1    ), ZYG1_CAEBR  (Q621J7    )
» more

PDB
[Detailed view]
38 PDB

1FTS; 1JPJ; 1JPN; 1NG1; 1O87; 1OKK; 1RJ9; 1RY1; 2C03; 2C04; 2CNW; 2FFH; 2IY3; 2IYL; 2J28; 2J37; 2J45; 2J46; 2J7P; 2NG1; 2OG2; 2Q9A; 2Q9B; 2Q9C; 2QY9; 2V3C; 2XKV; 2XXA; 2YHS; 3B9Q; 3DM5; 3NDB; 3NG1; 3ZN8; 4C7O; 4UE5; 5GAD; 5GAF
» more

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