PROSITE documentation PDOC00881

Ribosomal protein L31e signature

View entry in original PROSITE document format
View entry in raw text format (no links)
PURL: https://purl.expasy.org/prosite/documentation/PDOC00881

• Description
• Technical section
• References
• Copyright
• Miscellaneous

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

• Mammalian L31 [1].
• Plants L31.
• Yeast L34.
• Archaeal L31 [2].

These proteins have 87 to 128 amino-acid residues. As a signature pattern, we selected a conserved region located in the central section.

Last update:

December 2004 / Pattern and text revised.

-------------------------------------------------------------------------------

PROSITE method (with tools and information) covered by this documentation:

?, PS01144;   (?)

• Consensus pattern:
  [VI]-[KRWVI]-[LIV]-[DSAG]-x(2)-[LIV]-[NS]-x-[AKQEHFYLCT]-x-W-x-[KRQE]-[GS]
• Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
  Clustal format, color, condensed view  /  Clustal format, color  /  Clustal format, plain text  /  Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic distribution of all UniProtKB (Swiss-Prot + TrEMBL) entries matching PS01144
• Retrieve a list of all UniProtKB (Swiss-Prot + TrEMBL) entries matching PS01144
• Scan UniProtKB (Swiss-Prot and/or TrEMBL) entries against PS01144

1	Authors	Tanaka T. Kuwano Y. Kuzumaki T. Ishikawa K. Ogata K.
	Title	Nucleotide sequence of cloned cDNA specific for rat ribosomal protein L31.
	Source	Eur. J. Biochem. 162:45-48(1987).
	PubMed ID	3816785

2	Authors	Bergmann U. Arndt E.
	Title	Evidence for an additional archaebacterial gene cluster in Halobacterium marismortui encoding ribosomal proteins HL46e and HL30.
	Source	Biochim. Biophys. Acta 1050:56-60(1990).
	PubMed ID	2207169

PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see prosite_license.html.

Errors:

can't use Expasy function 'getEntry_generic' (Undefined subroutine &Expasy::getEntry_generic called at /work/expasy/www/lib/Prosite/prosite_functions.pm line 343.

)!

can't use Expasy function 'getEntry_generic' (Undefined subroutine &Expasy::getEntry_generic called at /work/expasy/www/lib/Prosite/prosite_functions.pm line 363.

)!