PROSITE entry PS01144

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General information about the entry

Entry name [info]	RIBOSOMAL_L31E
Accession [info]	PS01144
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00881

Name and characterization of the entry

Description [info]	Ribosomal protein L31e signature.
Pattern [info]	[VI]-[KRWVI]-[LIV]-[DSAG]-x(2)-[LIV]-[NS]-x-[AKQEHFYLCT]-x-W-x-[KRQE]- [GS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	67 in 67 different sequences
Number of true positive hits	67 in 67 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	19
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	77.91 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

67 sequences

RL311_ARATH (Q9SLL7), RL312_ARATH (Q9STR1), RL313_ARATH (P51420),

RL31A_YEAST (P0C2H8), RL31B_CANAL (A0A1D8PHF5), RL31B_YEAST (P0C2H9), 
RL31_AEDAE  (Q9GN74), RL31_AERPE  (Q9YD25), RL31_ARCFU  (O28213), 
RL31_ASHGO  (Q757D7), RL31_BOVIN  (Q56JX3), RL31_CAEEL  (Q9U332), 
RL31_CANGA  (Q6FWF4), RL31_CHLRE  (P45841), RL31_CYAPA  (Q9XGL4), 
RL31_DICDI  (Q54XB5), RL31_DROME  (Q9V597), RL31_DROVI  (O18602), 
RL31_HALMA  (P18138), RL31_HALS3  (B0R7X8), RL31_HALSA  (Q9HMN0), 
RL31_HALWD  (Q18EU7), RL31_HELVI  (Q9GP16), RL31_HUMAN  (P62899), 
RL31_ICTPU  (Q90YT7), RL31_MARMO  (Q1KSC7), RL31_META3  (A6UT96), 
RL31_METAC  (Q8TIN3), RL31_METB6  (A7I9I7), RL31_METHJ  (Q2FS98), 
RL31_METJA  (P54009), RL31_METKA  (Q8TUY4), RL31_METLZ  (A2STI8), 
RL31_METM5  (A4G0C8), RL31_METM6  (A9A8N0), RL31_METM7  (A6VI49), 
RL31_METMA  (Q8PYQ4), RL31_METMP  (Q6M155), RL31_METPE  (B8GEU5), 
RL31_METTH  (O27649), RL31_METVS  (A6UR55), RL31_MOUSE  (P62900), 
RL31_NATPD  (Q3ITD6), RL31_NICGU  (P46290), RL31_PANGI  (Q9MAV7), 
RL31_PAROL  (Q9IA76), RL31_PERFR  (Q9M573), RL31_PICMA  (O65071), 
RL31_PICTO  (Q6L2L1), RL31_PIG(P62901), RL31_PONAB  (Q5RBR9), 
RL31_PYRAB  (Q9UYI7), RL31_PYRAE  (Q8ZTU2), RL31_PYRCJ  (A3MX75), 
RL31_PYRFU  (Q8U3S7), RL31_PYRHO  (P58189), RL31_PYRIL  (A1RRQ3), 
RL31_PYRNV  (B1YAD6), RL31_RAT(P62902), RL31_SCHPO  (Q9URX6), 
RL31_SPOFR  (Q7KF90), RL31_STAMF  (A3DNH4), RL31_THEAC  (Q9HM17), 
RL31_THEKO  (Q5JGT5), RL31_THEON  (B6YWY3), RL31_THEVO  (Q97CU1), 
RL31_XENLA  (Q6NUH0)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

19 sequences

RL31_DESA1  (B8D5Q6), RL31_ENCCU  (Q8SSC8), RL31_HALLT  (B9LUU9),

RL31_HYPBU  (A2BN56), RL31_IGNH4  (A8A968), RL31_METAR  (Q0W5H1), 
RL31_METMJ  (A3CWZ5), RL31_PYRAR  (A4WL96), RL31_SACS2  (P58190), 
RL31_SULAC  (P38618), RL31_SULIA  (C3MZB2), RL31_SULIK  (C4KIJ0), 
RL31_SULIL  (C3MR77), RL31_SULIM  (C3MXG6), RL31_SULIN  (C3NGA2), 
RL31_SULIY  (C3N7D2), RL31_SULTO  (Q971I2), RL31_TETTS  (Q22DH9), 
RL31_THEGJ  (C5A7H3)

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PDB
[Detailed view]

300 PDB

1FFK; 1JJ2; 1K73; 1K8A; 1K9M; 1KC8; 1KD1; 1KQS; 1M1K; 1M90; 1N8R; 1NJI; 1Q7Y; 1Q81; 1Q82; 1Q86; 1QVF; 1QVG; 1S72; 1VQ4; 1VQ5; 1VQ6; 1VQ7; 1VQ8; 1VQ9; 1VQK; 1VQL; 1VQM; 1VQN; 1VQO; 1VQP; 1W2B; 1YHQ; 1YI2; 1YIJ; 1YIT; 1YJ9; 1YJN; 1YJW; 2OTJ; 2OTL; 2QA4; 2QEX; 2WW9; 2WWA; 2WWB; 3CC2; 3CC4; 3CC7; 3CCE; 3CCJ; 3CCL; 3CCM; 3CCQ; 3CCR; 3CCS; 3CCU; 3CCV; 3CD6; 3CMA; 3CME; 3CPW; 3CXC; 3G4S; 3G6E; 3G71; 3I55; 3I56; 3J6X; 3J6Y; 3J77; 3J78; 3J7O; 3J7P; 3J7Q; 3J7R; 3JCT; 3OW2; 4ADX; 4U3M; 4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 4U52; 4U53; 4U55; 4U56; 4U6F; 4UG0; 4V4B; 4V6I; 4V6U; 4V6W; 4V6X; 4V7F; 4V7R; 4V88; 4V8T; 4V8Y; 4V8Z; 4V91; 4V9F; 5AJ0; 5APN; 5APO; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 5GAK; 5H4P; 5I4L; 5JCS; 5JUO; 5JUP; 5JUS; 5JUT; 5JUU; 5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 5OBM; 5ON6; 5T2C; 5T62; 5T6R; 5TBW; 5TGA; 5TGM; 6ELZ; 6EM5; 6FT6; 6GQ1; 6GQB; 6GQV; 6HD7; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6LQM; 6LSR; 6LSS; 6LU8; 6M62; 6N8J; 6N8K; 6N8L; 6N8M; 6N8N; 6N8O; 6OIG; 6OLE; 6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QIK; 6QT0; 6QTZ; 6QZP; 6R84; 6R86; 6R87; 6RI5; 6RZZ; 6S05; 6S47; 6SKF; 6SKG; 6SNT; 6SV4; 6SWA; 6T4Q; 6T7I; 6T7T; 6T83; 6TB3; 6TH6; 6TNU; 6WOO; 6XA1; 6XIQ; 6XIR; 6XU6; 6XU7; 6XU8; 6Y0G; 6Y2L; 6Y57; 6Y6X; 6YLG; 6YLH; 6YLX; 6YLY; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZM7; 6ZME; 6ZMI; 6ZMO; 7AZY; 7B7D; 7BHP; 7BT6; 7BTB; 7CPU; 7CPV; 7F5S; 7LS1; 7LS2; 7MPI; 7MPJ; 7N8B; 7NAC; 7NAD; 7NAF; 7NRC; 7NRD; 7OF1; 7OH3; 7OHQ; 7OHR; 7OHV; 7OW7; 7OYC; 7PZY; 7Q08; 7Q0F; 7Q0P; 7Q0R; 7R72; 7R7A; 7TOO; 7TOP; 7U0H; 7UG6; 7UOO; 7UQB; 7UQZ; 7V08; 7XNX; 7XNY; 7Z34; 7ZPQ; 7ZRS; 7ZS5; 7ZUW; 7ZUX; 7ZW0; 8A3D; 8AAF; 8AGT; 8AGU; 8AGV; 8AGW; 8AGX; 8AGZ; 8BIP; 8BJQ; 8BQD; 8BQX; 8ESQ; 8ESR; 8ETC; 8ETG; 8ETI; 8ETJ; 8EUG; 8EUI; 8G5Y; 8G5Z; 8G60; 8G61; 8G6J; 8GLP; 8HFR
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