 |
|
| Entry: PS00041 |
General information about the entry
| Entry name [info] | HTH_ARAC_FAMILY_1 |
| Accession [info] | PS00041 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 05-DEC-2018 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00040 |
Name and characterization of the entry
| Description [info] | Bacterial regulatory proteins, araC family signature. |
| Pattern [info] |
[KRQ]-[LIVMA]-x(2)-[GSTALIV]-{FYWPGDN}-x(2)-[LIVMSA]-x(4,9)-[LIVMF]-x-
{PLH}-[LIVMSTA]-[GSTACIL]-{GPK}-{F}-x-[GANQRF]-[LIVMFY]-x(4,5)-[LFY]-
x(3)-[FYIVA]-{FYWHCM}-{PGVI}-x(2)-[GSADENQKR]-x-[NSTAPKL]-[PARL].
|
Numerical results [info]
| Total number of hits | 316 in 314 different sequences |
| Number of true positive hits | 214 in 212 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 102 in 102 different sequences |
| Number of false negative sequences | 46 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 67.72 % |
| Recall (true positives / (true positives + false negatives)) | 82.31 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
212 sequences
AARP_PROST (P43463 ), ADAA_BACSU (P19219 ), ADA_ECOLI (P06134 ), ADA_SALTY (P26189 ), ADIY_ECOLI (P33234 ), AGGR_ECOLX (P43464 ), ALKA_MYCTO (P9WJW2 ), ALKA_MYCTU (P9WJW3 ), ALKR_ACIAD (O31249 ), ANDR_BURCE (Q84BZ4 ), APPY_ECOLI (P05052 ), ARACL_STRAT (Q03320 ), ARACL_STRLI (P35319 ), ARAC_CITFR (P11765 ), ARAC_DICCH (P07642 ), ARAC_ECO57 (P0A9E1 ), ARAC_ECOLI (P0A9E0 ), ARAC_SALTY (P03022 ), ARGR_PSEAE (G3XCU2 ), BTR_BACSU (P40408 ), CAF1R_YERPE (P26950 ), CDHR_PSEAE (Q9HTH5 ), CFAD_ECOLX (P25393 ), CHBR_ECOLI (P17410 ), CSVR_ECOLX (P43460 ), ENVY_ECOLI (P10805 ), EUTR_ECOLI (P36547 ), EUTR_SALTY (Q9ZFU7 ), EXSA_PSEAE (P26993 ), FAPR_ECOLX (P23774 ), GADW_ECO57 (P63202 ), GADW_ECOL6 (Q8FCI7 ), GADW_ECOLI (P63201 ), GADW_SHIFL (P63203 ), GADX_ECO27 (Q9EYV5 ), GADX_ECO57 (P58230 ), GADX_ECOL6 (Q8FCI6 ), GADX_ECOLI (P37639 ), GADX_SHIFL (Q83PR0 ), GLXA_RHIME (O87389 ), HILD_SALTS (E1WAC0 ), HILD_SALTY (P0CL08 ), HRPB_RALSO (P31778 ), INVF_SALTI (P69342 ), INVF_SALTY (P69343 ), LACR_STAXY (O33813 ), LCRF_YERPE (P28808 ), LUMQ_PHOLE (Q51872 ), MARA_ECO57 (P0ACH6 ), MARA_ECOLI (P0ACH5 ), MARA_SALEN (P0A2S6 ), MARA_SALTI (P0A2S5 ), MARA_SALTY (P0A2S4 ), MARA_SHIFL (P0ACH7 ), MELR_ECOL6 (P0ACH9 ), MELR_ECOLI (P0ACH8 ), MMSR_PSEAE (P28809 ), MSMR_STRMU (Q00753 ), MXIE_SHIFL (P0A2S7 ), MXIE_SHISO (P0A2S8 ), NIMR_ECOLI (P76241 ), NPHR_RHOSO (B1Q2A8 ), PCHR_PSEAE (P40883 ), PERA_ECO27 (P43459 ), POCR_SALTY (Q05587 ), PQRA_PROVU (Q52620 ), RAFR_PEDPE (P43465 ), RAMA_KLEPN (Q48413 ), RHAR_CROS8 (A7ML57 ), RHAR_ECO24 (A7ZUB8 ), RHAR_ECO57 (Q8X7B3 ), RHAR_ECOBW (C5A074 ), RHAR_ECOHS (A8A710 ), RHAR_ECOK1 (A1AI83 ), RHAR_ECOL5 (Q0TAF7 ), RHAR_ECOL6 (Q8FBD7 ), RHAR_ECOLI (P09378 ), RHAR_ECOUT (Q1R413 ), RHAR_ENT38 (A4WG90 ), RHAR_KLEP7 (A6TGB0 ), RHAR_MANSM (Q65Q30 ), RHAR_SALA4 (B5F0N0 ), RHAR_SALAR (A9MI63 ), RHAR_SALCH (Q57HG7 ), RHAR_SALDC (B5FPP6 ), RHAR_SALEP (B5QWY5 ), RHAR_SALHS (B4TBY4 ), RHAR_SALNS (B4SZZ4 ), RHAR_SALPA (Q5PKG1 ), RHAR_SALPB (A9MZC9 ), RHAR_SALPK (B5BJG9 ), RHAR_SALSV (B4TPR0 ), RHAR_SALTI (Q8Z2V5 ), RHAR_SALTY (P40865 ), RHAR_SHIBS (Q31U83 ), RHAR_SHIDS (Q32A71 ), RHAR_SHIF8 (Q0SZ96 ), RHAR_SHIFL (Q83PD9 ), RHAR_YERP3 (A7FN79 ), RHAR_YERPA (Q1C0W2 ), RHAR_YERPB (B2K1W6 ), RHAR_YERPE (Q8ZIZ9 ), RHAR_YERPG (A9QYR6 ), RHAR_YERPN (Q1CEB6 ), RHAR_YERPP (A4TRS7 ), RHAR_YERPS (Q66FF1 ), RHAR_YERPY (B1JNC4 ), RHAS_CITK8 (A8AL27 ), RHAS_ECO24 (A7ZUB7 ), RHAS_ECO27 (B7UNM6 ), RHAS_ECO45 (B7MI37 ), RHAS_ECO55 (B7L9G1 ), RHAS_ECO57 (Q8X897 ), RHAS_ECO5E (B5YZ43 ), RHAS_ECO7I (B7NUA1 ), RHAS_ECO81 (B7N2P7 ), RHAS_ECO8A (B7M6V7 ), RHAS_ECOBW (C5A073 ), RHAS_ECODH (B1XB72 ), RHAS_ECOHS (A8A709 ), RHAS_ECOK1 (A1AI82 ), RHAS_ECOL5 (Q0TAF8 ), RHAS_ECOL6 (Q8CXW5 ), RHAS_ECOLC (B1IVH3 ), RHAS_ECOLI (P09377 ), RHAS_ECOLU (B7NFK3 ), RHAS_ECOSE (B6I4P8 ), RHAS_ECOSM (B1LMU6 ), RHAS_ECOUT (Q1R414 ), RHAS_ENT38 (A4WG91 ), RHAS_KLEP3 (B5XZ49 ), RHAS_KLEP7 (A6TGA9 ), RHAS_PECAS (Q6DA22 ), RHAS_PECCP (C6DJR4 ), RHAS_SALA4 (B5F0M9 ), RHAS_SALAR (A9MI64 ), RHAS_SALCH (Q57HG8 ), RHAS_SALDC (B5FPP5 ), RHAS_SALEP (B5QWY4 ), RHAS_SALG2 (B5RFC3 ), RHAS_SALHS (B4TBY3 ), RHAS_SALNS (B4SZZ3 ), RHAS_SALPA (Q5PKG2 ), RHAS_SALPB (A9MZC8 ), RHAS_SALPC (C0Q3L4 ), RHAS_SALPK (B5BJG8 ), RHAS_SALSV (B4TPQ9 ), RHAS_SALTI (P0A2T0 ), RHAS_SALTY (P0A2S9 ), RHAS_SHIBS (Q31U84 ), RHAS_SHIDS (Q32A70 ), RHAS_SHIF8 (Q0SZ95 ), RHAS_SHIFL (Q83PE0 ), RHAS_SHISS (Q3YV71 ), RHAS_YERP3 (A7FN80 ), RHAS_YERPB (B2K1W5 ), RHAS_YERPG (A9QYR8 ), RHAS_YERPP (A4TRS8 ), RHAS_YERPS (Q66FF2 ), RHAS_YERPY (B1JNC5 ), RIPA_CORDI (Q6NI56 ), RIPA_COREF (Q8FQS2 ), RIPA_CORGL (Q8NRR3 ), RNS_ECOLX (P16114 ), ROB_ECO57 (P0ACI1 ), ROB_ECOLI (P0ACI0 ), ROB_SHIFL (P0ACI2 ), SIRC_SALTI (Q8Z4A6 ), SIRC_SALTS (E1WAB2 ), SIRC_SALTY (P0CL09 ), SOXS_ECO57 (P0A9E4 ), SOXS_ECOL6 (P0A9E3 ), SOXS_ECOLI (P0A9E2 ), SOXS_SALTY (Q56143 ), TCPN_VIBC3 (A5F384 ), TCPN_VIBCH (P0C6D6 ), TETD_ECOLX (P28816 ), THCR_RHOER (P43462 ), URER_ECOLX (P32326 ), URER_PROMH (Q02458 ), VIRF_SHIDY (P0A2T2 ), VIRF_SHIFL (P0A2T1 ), VIRF_SHISO (P0A2T3 ), VIRF_YERE8 (A1JU91 ), VIRF_YEREN (P0C2V5 ), XYLR_ECO57 (P0ACI5 ), XYLR_ECOL6 (P0ACI4 ), XYLR_ECOLI (P0ACI3 ), XYLR_HAEIN (P45043 ), XYLS1_PSEPU (Q04710 ), XYLS2_PSEPU (Q05092 ), XYLS3_PSEPU (Q05335 ), XYLS4_PSEPU (Q04713 ), XYLS_PSEPU (P07859 ), Y1052_HAEIN (P45008 ), Y4FK_SINFN (P55449 ), YCGK_PSEVC (P43461 ), YDCO_ECOLI (P76103 ), YDEC_BACSU (P96660 ), YDEE_BACSU (P96662 ), YDEO_ECO57 (Q8X4Z9 ), YDEO_ECOL6 (Q8FHG0 ), YDEO_ECOLI (P76135 ), YDEO_SHIFL (Q83RF4 ), YESS_BACSU (O31522 ), YFIF_BACSU (P54722 ), YIDL_ECOLI (P31449 ), YIJO_ECOLI (P32677 ), YISR_BACSU (P40331 ), YMCR_STRLA (P43458 ), YOBQ_BACSU (O34901 ), YPDC_ECOLI (P77396 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
46 sequences
FEAR_ECOLI (Q47129 ), ORUR_PSEAE (P72171 ), RAMA_ENTCL (P55922 ), RCLR_ECOLI (P77379 ), RHAR_PECAS (Q6DA21 ), RHAR_PECCP (C6DJR5 ), RHAS_ESCF3 (B7LVD8 ), RHAS_MANSM (Q65Q31 ), RHAS_SHIB3 (B2TVP7 ), RHAS_YERPA (Q1C0W1 ), RHAS_YERPE (Q8ZJ00 ), RHAS_YERPN (Q1CEB5 ), RHRA_RHIME (Q9Z3Q6 ), VIRS_MYCTO (P9WMJ2 ), VIRS_MYCTU (P9WMJ3 ), VQSM_PSEAE (Q9I1P2 ), Y077_STAAW (Q8NYT6 ), Y078_STAAS (Q6GD21 ), Y084_STAAC (Q5HJR8 ), Y097_STAAN (Q7A882 ), Y101_STAAM (Q99XB1 ), Y107_STAAR (Q6GKK1 ), Y1395_MYCTO (P9WMJ0 ), Y1395_MYCTU (P9WMJ1 ), Y1430_MYCBO (P68912 ), Y161_STAAB (Q2YV56 ), Y165_STAES (Q8CQE3 ), Y184_STAA8 (Q2G1E1 ), Y1931_MYCTU (P95283 ), Y198_STAAS (Q6GCQ3 ), Y198_STAAW (Q8NYJ9 ), Y201_STAAC (Q5HJF7 ), Y214_STAAR (Q6GK93 ), Y215_STAAN (Q7A7X9 ), Y217_STAA3 (Q2FK47 ), Y223_STAAM (Q99X00 ), Y2406_STAEQ (Q5HKE0 ), YBCM_ECOLI (P77634 ), YBFI_BACSU (O31449 ), YBFP_BACSU (O31456 ), YDIP_ECOLI (P77402 ), YHTH1_STAAU (Q936F1 ), YKGA_ECOLI (P77601 ), YNEL_ECOLI (P76138 ), YQHC_ECOLI (Q46855 ), YTDP_BACSU (O32071 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
102 sequences
AAM_RHOER (K9NBS6 ), ABGR_ECOLI (P77744 ), APY4_ARATH (Q8H1D8 ), ARGD_HAEDU (Q7VMS5 ), AROB_SYNP6 (Q5N3D4 ), ARSB_YEREN (P74985 ), AT21A_ARATH (P0CH01 ), BIOC_DECAR (Q47C02 ), BPNT1_MOUSE (Q9Z0S1 ), BRE1A_ORYSI (A2XW69 ), BRE1A_ORYSJ (Q7XU27 ), CBID_PROM9 (Q31DE8 ), CHB_SERMA (Q54468 ), CORA_YERPE (Q8ZAG5 ), CORA_YERPS (Q66FY7 ), ENPP1_RAT (Q924C3 ), ERD6_ARATH (O04036 ), FABD_HAEIN (P43712 ), FKS3_YEAST (Q04952 ), FTSW_ACIAD (Q6FFC1 ), GATB_FRACC (Q2J6U8 ), GATB_THEFY (Q47SC0 ), GRM6_HUMAN (O15303 ), GRM6_MOUSE (Q5NCH9 ), GRM6_RABIT (Q863I4 ), GRM6_RAT (P35349 ), HLDE_HYDCU (Q31IC2 ), KDPA_PSEAE (P57683 ), KDPA_PSEPK (Q88FD7 ), KDPA_PSESM (Q883V6 ), KUP1_SPHWW (A5V2F7 ), L2_FOWPN (P15911 ), LYSO_ECOLI (P75826 ), L_CCHFI (Q6TQR6 ), MATK_HELAN (Q1KXX8 ), MEND_BACAH (A0RK76 ), MEND_BACAN (Q81K94 ), MEND_BACCN (A7GU91 ), MEND_BACCR (Q816H7 ), MEND_BACCZ (Q632I2 ), MEND_BACHK (Q6HC26 ), MEND_BACP2 (A8FGK9 ), MEND_BACSU (P23970 ), MEND_BACVZ (A7Z812 ), MEND_BACWK (A9VM77 ), MEND_GEOKA (Q5KVX6 ), MEND_GEOTN (A4IS14 ), MEND_LISIN (Q92AY5 ), MEND_LISMF (Q71YZ2 ), MEND_LISMO (Q8Y6K9 ), MEND_LISW6 (A0AJC9 ), METK_SALRD (Q2RYY4 ), METN_CHLCV (Q823C4 ), MON1_ORYSJ (Q5JL08 ), MPRGB_DANRE (Q6DC77 ), MURA1_STRP1 (P65458 ), MURA1_STRP3 (P0DC44 ), MURA1_STRP6 (Q5XCX7 ), MURA1_STRP8 (P65459 ), MURA1_STRPM (Q48UD0 ), MURA1_STRPQ (P0DC45 ), MUTS_AROAE (Q5NYP9 ), NAR1_LODEL (A5DSI2 ), NAT12_ARATH (Q3E7D0 ), NHAA2_CLAM3 (A5CTB2 ), NR5A2_CHICK (O42101 ), POL2_CNSV (Q8QVU9 ), PRP28_ASPCL (A1CHL3 ), PRP28_ASPFU (Q4WPE9 ), PRP28_ASPNC (A2QIL2 ), PRP28_ASPOR (Q2UH00 ), PRP28_ASPTN (Q0CLX0 ), PRP28_BOTFB (A6RJA2 ), PRP28_COCIM (Q1DMX8 ), PRP28_EMENI (Q5BCU6 ), PRP28_GIBZE (Q4I7F9 ), PRP28_NEOFI (A1CX72 ), PRP28_NEUCR (Q7SEL0 ), PRP28_PHANO (Q0UWC8 ), PRP28_SCLS1 (A7EGG4 ), PURA_ACIAD (Q6FCS7 ), RH1_ARATH (Q7FGZ2 ), RP54_VIBAN (O08429 ), S2610_HUMAN (Q8NG04 ), S4A10_BOVIN (Q32LP4 ), S4A10_HUMAN (Q6U841 ), S4A10_MOUSE (Q5DTL9 ), S4A10_RAT (Q80ZA5 ), SELA_HAEDU (Q7VKC2 ), SEM4A_HUMAN (Q9H3S1 ), SEM4B_MOUSE (Q62179 ), SYFB_XANAC (Q8PJE5 ), SYG_MYCPA (Q73Y21 ), SYG_NOCFA (Q5YZT7 ), SYV_SCHPO (O75005 ), TLR9_BOVIN (Q5I2M5 ), TLR9_SHEEP (Q5I2M4 ), TM235_HUMAN (A6NFC5 ), UFL1_NEMVE (A7S2N8 ), YB95_ARATH (Q8W487 ), YKOC_BACSU (O34572 ), YPD9_CAEEL (Q11188 )» more |
| PDB [Detailed view] |
10 PDB
1BL0; 1D5Y; 1WPK; 1XS9; 1ZGW; 2K9S; 3GBG; 4FE4; 4FE7; 5SUW |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission