PROSITE entry PS00048

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	PROTAMINE_P1
Accession [info]	PS00048
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00047

Name and characterization of the entry

Description [info]	Protamine P1 signature.
Pattern [info]	[AV]-R-[NFY]-R-x(2,3)-[ST]-{S}-S-{NS}-S.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	149 in 148 different sequences
Number of true positive hits	140 in 140 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 8 different sequences
Number of false negative sequences	16
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	93.96 %
Recall (true positives / (true positives + false negatives))	89.74 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	2
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

140 sequences

HSP1_AEPRU  (Q9GLP9), HSP1_ALLMI  (Q7LZB6), HSP1_ALOSE  (P35302),

HSP1_ANTBE  (Q71V18), HSP1_ANTFL  (Q71V20), HSP1_ANTGO  (Q71V17), 
HSP1_ANTLA  (O18745), HSP1_ANTLE  (Q71V16), HSP1_ANTMI  (Q71V19), 
HSP1_ANTST  (P42129), HSP1_ANTSW  (Q71V22), HSP1_BETPE  (Q9GLQ0), 
HSP1_BOVIN  (P02318), HSP1_CAEFU  (P42131), HSP1_CAPHI  (P67833), 
HSP1_CAVPO  (P35304), HSP1_CHICK  (P15340), HSP1_CHIMC  (Q8WNZ4), 
HSP1_CHRPI  (Q7LZB2), HSP1_COLGU  (Q9GKQ5), HSP1_CORTO  (Q8WNZ0), 
HSP1_COTJA  (P14402), HSP1_DASAL  (P67851), HSP1_DASBY  (Q71VG7), 
HSP1_DASCR  (Q71VG8), HSP1_DASGE  (P67850), HSP1_DASHA  (P67834), 
HSP1_DASMA  (P62485), HSP1_DASRO  (P67830), HSP1_DASSP  (P67849), 
HSP1_DASVI  (P67835), HSP1_DENDO  (Q9GLQ6), HSP1_DENGO  (P67838), 
HSP1_DESRO  (Q8WME4), HSP1_DIDVI  (P67837), HSP1_DORMU  (P67841), 
HSP1_DORVA  (Q9GLQ4), HSP1_DROGL  (P42132), HSP1_EQUAS  (Q66QC7), 
HSP1_GORGO  (P35303), HSP1_HORSE  (P15341), HSP1_HUMAN  (P04553), 
HSP1_HYLLA  (P35306), HSP1_HYPMS  (Q9GLQ1), HSP1_LAGFA  (Q866P6), 
HSP1_LAGHI  (Q9GLQ2), HSP1_MACCM  (Q8WNZ8), HSP1_MACGI  (P42139), 
HSP1_MACMU  (Q9GJU4), HSP1_MONDO  (P67836), HSP1_MONRE  (Q7JH06), 
HSP1_MORME  (Q8WNZ5), HSP1_MOUSE  (P02319), HSP1_MURHA  (Q71V13), 
HSP1_MURLO  (P67848), HSP1_MURME  (Q71V14), HSP1_MURNA  (Q71V12), 
HSP1_MYOME  (Q71VH0), HSP1_MYOWA  (Q71VG9), HSP1_MYRFA  (P67845), 
HSP1_NATST  (Q8WNZ3), HSP1_NEOLO  (P67852), HSP1_NINRI  (Q71VP7), 
HSP1_NINTI  (Q71VP5), HSP1_NINYV  (Q71VP6), HSP1_NOTAG  (P42137), 
HSP1_NOTEU  (P42138), HSP1_NOTPA  (Q9GLQ9), HSP1_NOTRU  (P67842), 
HSP1_NOTTY  (P42143), HSP1_ONCFR  (Q9GLQ3), HSP1_ONYUN  (P67839), 
HSP1_ORCOR  (P24713), HSP1_ORNAN  (P35307), HSP1_OSPRU  (P42142), 
HSP1_OTOHE  (Q8WNZ2), HSP1_PANPA  (P35308), HSP1_PANTR  (P35309), 
HSP1_PAPCY  (Q7JIX8), HSP1_PARAP  (P67831), HSP1_PARRT  (Q71V11), 
HSP1_PETCN  (Q9GLQ5), HSP1_PETXA  (Q9GLQ7), HSP1_PHACI  (P79990), 
HSP1_PHACL  (Q71V10), HSP1_PHADO  (P67853), HSP1_PHATA  (P67847), 
HSP1_PIG(P04101), HSP1_PILBA  (Q8MJT0), HSP1_PLAMM  (Q71VP4), 
HSP1_PLEAU  (Q8WNZ1), HSP1_PONPY  (P35310), HSP1_POTLO  (Q9GLP8), 
HSP1_PSEBA  (O18768), HSP1_PSECU  (P42145), HSP1_PSEMD  (P67832), 
HSP1_PSENI  (Q71VG5), HSP1_PSEWO  (Q71VG4), HSP1_PTEHP  (Q8WNZ9), 
HSP1_PTEPA  (Q7JH07), HSP1_RABIT  (P10119), HSP1_RAT(P10118), 
HSP1_RHIHA  (Q8WNZ6), HSP1_SAGIM  (P24714), HSP1_SAISC  (Q9GKQ1), 
HSP1_SARHA  (P62486), HSP1_SEMEN  (Q9GJR3), HSP1_SETBR  (P67840), 
HSP1_SHEEP  (P68038), HSP1_SMIAI  (Q71UG9), HSP1_SMIAR  (Q71UG8), 
HSP1_SMIBI  (Q9TUC4), HSP1_SMICR  (P67844), HSP1_SMIDL  (Q71UG7), 
HSP1_SMIDO  (Q71UG6), HSP1_SMIGA  (Q71UG4), HSP1_SMIGI  (Q71UG5), 
HSP1_SMIGR  (Q9TUC3), HSP1_SMIHI  (Q71UG3), HSP1_SMILE  (Q71UG2), 
HSP1_SMILO  (Q9TUC2), HSP1_SMIMA  (Q71VP8), HSP1_SMIMU  (Q71VP9), 
HSP1_SMIOO  (Q71UG1), HSP1_SMIPS  (Q71UG0), HSP1_SMIVI  (Q71UF9), 
HSP1_SMIYO  (Q71UF8), HSP1_TACAC  (P35311), HSP1_THYCY  (P67846), 
HSP1_THYST  (Q9GLQ8), HSP1_TRACR  (Q9GKQ2), HSP1_TRAFR  (Q9GKQ4), 
HSP1_TRAGE  (Q7JHM8), HSP1_TRAJO  (Q8MJS8), HSP1_TRAOB  (Q7JIX9), 
HSP1_TRAPH  (Q8MHZ2), HSP1_TRAPL  (Q7JHM9), HSP1_TRAVT  (Q7JIY0), 
HSP1_TRIVU  (P42152), HSP1_WALBI  (P67843)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

16 sequences

HSP1_EPTBR  (Q8WMC7), HSP1_EPTFU  (Q7JH05), HSP1_GALVR  (Q8WP00),

HSP1_GLABE  (Q8WNY9), HSP1_HYPSA  (Q7JH04), HSP1_ISOMA  (P42136), 
HSP1_MURCY  (Q8WNY7), HSP1_MYODA  (Q8WNY8), HSP1_NASLA  (Q9GKQ3), 
HSP1_NEOBU  (Q8WMD3), HSP1_PERGU  (P42147), HSP1_PLAGI  (O18747), 
HSP1_PLAIN  (P42148), HSP1_PLAMS  (O18746), HSP1_PLATE  (O18748), 
HSP1_RHIFE  (Q8WNZ7)

» more

UniProtKB/Swiss-Prot
False positive sequences

8 sequences

AAP_AAV2S   (D5SGZ8), CSR2_YEAST  (Q12734), PININ_BOVIN (P79122),

PRM2_RATTU  (Q91VB3), RBR_HIEPI   (B1ABR6), RBR_PILOF   (B1ABS0), 
SGO1_CANGA  (Q6FMT2), SPT13_HUMAN (Q96N96)

» more