PROSITE entry PS00048

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General information about the entry

Entry name [info]	PROTAMINE_P1
Accession [info]	PS00048
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00047

Name and characterization of the entry

Description [info]	Protamine P1 signature.
Pattern [info]	[AV]-R-[NFY]-R-x(2,3)-[ST]-{S}-S-{NS}-S.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	149 in 148 different sequences
Number of true positive hits	140 in 140 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 8 different sequences
Number of false negative sequences	16
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	93.96 %
Recall (true positives / (true positives + false negatives))	89.74 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	2
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

140 sequences

HSP1_AEPRU  (Q9GLP9), HSP1_ALLMI  (Q7LZB6), HSP1_ALOSE  (P35302),

HSP1_ANTBE  (Q71V18), HSP1_ANTFL  (Q71V20), HSP1_ANTGO  (Q71V17), 
HSP1_ANTLA  (O18745), HSP1_ANTLE  (Q71V16), HSP1_ANTMI  (Q71V19), 
HSP1_ANTST  (P42129), HSP1_ANTSW  (Q71V22), HSP1_BETPE  (Q9GLQ0), 
HSP1_BOVIN  (P02318), HSP1_CAEFU  (P42131), HSP1_CAPHI  (P67833), 
HSP1_CAVPO  (P35304), HSP1_CHICK  (P15340), HSP1_CHIMC  (Q8WNZ4), 
HSP1_CHRPI  (Q7LZB2), HSP1_COLGU  (Q9GKQ5), HSP1_CORTO  (Q8WNZ0), 
HSP1_COTJA  (P14402), HSP1_DASAL  (P67851), HSP1_DASBY  (Q71VG7), 
HSP1_DASCR  (Q71VG8), HSP1_DASGE  (P67850), HSP1_DASHA  (P67834), 
HSP1_DASMA  (P62485), HSP1_DASRO  (P67830), HSP1_DASSP  (P67849), 
HSP1_DASVI  (P67835), HSP1_DENDO  (Q9GLQ6), HSP1_DENGO  (P67838), 
HSP1_DESRO  (Q8WME4), HSP1_DIDVI  (P67837), HSP1_DORMU  (P67841), 
HSP1_DORVA  (Q9GLQ4), HSP1_DROGL  (P42132), HSP1_EQUAS  (Q66QC7), 
HSP1_GORGO  (P35303), HSP1_HORSE  (P15341), HSP1_HUMAN  (P04553), 
HSP1_HYLLA  (P35306), HSP1_HYPMS  (Q9GLQ1), HSP1_LAGFA  (Q866P6), 
HSP1_LAGHI  (Q9GLQ2), HSP1_MACCM  (Q8WNZ8), HSP1_MACGI  (P42139), 
HSP1_MACMU  (Q9GJU4), HSP1_MONDO  (P67836), HSP1_MONRE  (Q7JH06), 
HSP1_MORME  (Q8WNZ5), HSP1_MOUSE  (P02319), HSP1_MURHA  (Q71V13), 
HSP1_MURLO  (P67848), HSP1_MURME  (Q71V14), HSP1_MURNA  (Q71V12), 
HSP1_MYOME  (Q71VH0), HSP1_MYOWA  (Q71VG9), HSP1_MYRFA  (P67845), 
HSP1_NATST  (Q8WNZ3), HSP1_NEOLO  (P67852), HSP1_NINRI  (Q71VP7), 
HSP1_NINTI  (Q71VP5), HSP1_NINYV  (Q71VP6), HSP1_NOTAG  (P42137), 
HSP1_NOTEU  (P42138), HSP1_NOTPA  (Q9GLQ9), HSP1_NOTRU  (P67842), 
HSP1_NOTTY  (P42143), HSP1_ONCFR  (Q9GLQ3), HSP1_ONYUN  (P67839), 
HSP1_ORCOR  (P24713), HSP1_ORNAN  (P35307), HSP1_OSPRU  (P42142), 
HSP1_OTOHE  (Q8WNZ2), HSP1_PANPA  (P35308), HSP1_PANTR  (P35309), 
HSP1_PAPCY  (Q7JIX8), HSP1_PARAP  (P67831), HSP1_PARRT  (Q71V11), 
HSP1_PETCN  (Q9GLQ5), HSP1_PETXA  (Q9GLQ7), HSP1_PHACI  (P79990), 
HSP1_PHACL  (Q71V10), HSP1_PHADO  (P67853), HSP1_PHATA  (P67847), 
HSP1_PIG(P04101), HSP1_PILBA  (Q8MJT0), HSP1_PLAMM  (Q71VP4), 
HSP1_PLEAU  (Q8WNZ1), HSP1_PONPY  (P35310), HSP1_POTLO  (Q9GLP8), 
HSP1_PSEBA  (O18768), HSP1_PSECU  (P42145), HSP1_PSEMD  (P67832), 
HSP1_PSENI  (Q71VG5), HSP1_PSEWO  (Q71VG4), HSP1_PTEHP  (Q8WNZ9), 
HSP1_PTEPA  (Q7JH07), HSP1_RABIT  (P10119), HSP1_RAT(P10118), 
HSP1_RHIHA  (Q8WNZ6), HSP1_SAGIM  (P24714), HSP1_SAISC  (Q9GKQ1), 
HSP1_SARHA  (P62486), HSP1_SEMEN  (Q9GJR3), HSP1_SETBR  (P67840), 
HSP1_SHEEP  (P68038), HSP1_SMIAI  (Q71UG9), HSP1_SMIAR  (Q71UG8), 
HSP1_SMIBI  (Q9TUC4), HSP1_SMICR  (P67844), HSP1_SMIDL  (Q71UG7), 
HSP1_SMIDO  (Q71UG6), HSP1_SMIGA  (Q71UG4), HSP1_SMIGI  (Q71UG5), 
HSP1_SMIGR  (Q9TUC3), HSP1_SMIHI  (Q71UG3), HSP1_SMILE  (Q71UG2), 
HSP1_SMILO  (Q9TUC2), HSP1_SMIMA  (Q71VP8), HSP1_SMIMU  (Q71VP9), 
HSP1_SMIOO  (Q71UG1), HSP1_SMIPS  (Q71UG0), HSP1_SMIVI  (Q71UF9), 
HSP1_SMIYO  (Q71UF8), HSP1_TACAC  (P35311), HSP1_THYCY  (P67846), 
HSP1_THYST  (Q9GLQ8), HSP1_TRACR  (Q9GKQ2), HSP1_TRAFR  (Q9GKQ4), 
HSP1_TRAGE  (Q7JHM8), HSP1_TRAJO  (Q8MJS8), HSP1_TRAOB  (Q7JIX9), 
HSP1_TRAPH  (Q8MHZ2), HSP1_TRAPL  (Q7JHM9), HSP1_TRAVT  (Q7JIY0), 
HSP1_TRIVU  (P42152), HSP1_WALBI  (P67843)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

16 sequences

HSP1_EPTBR  (Q8WMC7), HSP1_EPTFU  (Q7JH05), HSP1_GALVR  (Q8WP00),

HSP1_GLABE  (Q8WNY9), HSP1_HYPSA  (Q7JH04), HSP1_ISOMA  (P42136), 
HSP1_MURCY  (Q8WNY7), HSP1_MYODA  (Q8WNY8), HSP1_NASLA  (Q9GKQ3), 
HSP1_NEOBU  (Q8WMD3), HSP1_PERGU  (P42147), HSP1_PLAGI  (O18747), 
HSP1_PLAIN  (P42148), HSP1_PLAMS  (O18746), HSP1_PLATE  (O18748), 
HSP1_RHIFE  (Q8WNZ7)

» more

UniProtKB/Swiss-Prot
False positive sequences

8 sequences

AAP_AAV2S   (D5SGZ8), CSR2_YEAST  (Q12734), PININ_BOVIN (P79122),

PRM2_RATTU  (Q91VB3), RBR_HIEPI   (B1ABR6), RBR_PILOF   (B1ABS0), 
SGO1_CANGA  (Q6FMT2), SPT13_HUMAN (Q96N96)

» more