We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS00088
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PURL: https://purl.expasy.org/prosite/signature/PS00088
Direct ScanProsite submission
General information about the entry
| Entry name [info] | SOD_MN |
| Accession [info] | PS00088 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00083 |
Name and characterization of the entry
| Description [info] | Manganese and iron superoxide dismutases signature. |
| Pattern [info] |
D-x-[WF]-E-H-[STA]-[FY](2). |
Numerical results [info]
| Total number of hits | 212 in 212 different sequences |
| Number of true positive hits | 212 in 212 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 4 |
| Number of 'partial' sequences | 31 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 98.15 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | manganese at position 1 |
| Site [info] | manganese at position 5 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
212 sequences
SODB_ASPNG (Q3MSU9), SODF1_ARATH (P21276), SODF1_ORYSJ (Q5VRL3), SODF2_ARATH (Q9LU64), SODF2_ORYSJ (Q5VSB7), SODF3_ARATH (Q9FMX0), SODF_ACIAM (Q9P9L3), SODF_AERPE (Q9Y8H8), SODF_BABBO (O15905), SODF_BACFR (P53638), SODF_BACSU (O35023), SODF_BORPE (P37369), SODF_BURSP (D3KVM5), SODF_CAMCO (P53639), SODF_CAMJE (Q0PBW9), SODF_CAMJJ (A1VXQ2), SODF_COXBU (P19685), SODF_ECO57 (P0AGD5), SODF_ECOL6 (P0AGD4), SODF_ECOLI (P0AGD3), SODF_ENTH1 (P34107), SODF_HELPJ (Q9ZKE6), SODF_HELPY (P43312), SODF_LEGPH (P31108), SODF_LEPBY (P50061), SODF_METJ (P23744), SODF_METTH (P18868), SODF_METTM (Q60036), SODF_MYCBO (Q7TVI9), SODF_MYCTO (P9WGE6), SODF_MYCTU (P9WGE7), SODF_NICPL (P22302), SODF_NOSS1 (Q8YSZ1), SODF_PHOLE (P09213), SODF_PLAF7 (Q8IAY6), SODF_PLAFA (Q9TW89), SODF_PLAFX (Q27740), SODF_PLAVI (Q9Y1A9), SODF_PORGI (P19665), SODF_PSEAE (P53641), SODF_PSEPK (Q88PD5), SODF_PSEPU (P09223), SODF_PSET1 (P84612), SODF_PYRAE (O93724), SODF_RHIME (Q9XD74), SODF_RHOCA (O30970), SODF_RICBR (Q1RH88), SODF_RICCN (Q92HJ3), SODF_RICFE (Q4ULI1), SODF_RICPR (Q9ZD15), SODF_RICTY (Q68WK0), SODF_SACS2 (P80857), SODF_SALTI (P0A2F5), SODF_SALTY (P0A2F4), SODF_SHIFL (P0AGD6), SODF_SOYBN (P28759), SODF_STRCO (O51917), SODF_SULAC (Q08713), SODF_SYNE7 (P18655), SODF_SYNY3 (P77968), SODF_TETPY (P19666), SODM1_ARATH (O81235), SODM1_BACAN (Q81LW0), SODM1_BACCR (Q818I1), SODM1_CAEEL (P31161), SODM1_HALME (O08461), SODM1_HALSA (P09737), SODM1_HALVD (Q03300), SODM1_LEPBY (P50058), SODM1_MAIZE (P09233), SODM1_STAA3 (Q2FGH0), SODM1_STAA8 (P0A0J3), SODM1_STAAB (Q2YT26), SODM1_STAAC (Q5HFK7), SODM1_STAAM (P0A0J1), SODM1_STAAN (P99098), SODM1_STAAR (Q6GGE6), SODM1_STAAS (Q6G913), SODM1_STAAW (P0A0J2), SODM2_ARATH (Q9LYK8), SODM2_BACAN (Q81JK8), SODM2_BACCR (Q814I6), SODM2_CAEEL (P41977), SODM2_HALME (O08460), SODM2_HALSA (P09224), SODM2_HALVD (Q03301), SODM2_LEPBY (P50059), SODM2_MAIZE (P41978), SODM2_STAA3 (Q2FKC6), SODM2_STAA8 (Q2G261), SODM2_STAAB (Q2YUU9), SODM2_STAAC (Q5HJN5), SODM2_STAAM (P66830), SODM2_STAAN (P66831), SODM2_STAAR (Q6GKH2), SODM2_STAAS (Q6GCZ1), SODM2_STAAW (P66832), SODM3_LEPBY (P50060), SODM3_MAIZE (P41979), SODM4_MAIZE (P41980), SODM_ACIAD (Q59094), SODM_AGABI (Q9P4T6), SODM_ASPFU (Q92450), SODM_ASPOR (Q877B6), SODM_BACCA (P28760), SODM_BACSU (P54375), SODM_BORBU (O30563), SODM_BORPE (P53642), SODM_BOVIN (P41976), SODM_BUCAI (P57286), SODM_BUCAP (Q8K9V4), SODM_BUCBP (Q89AR7), SODM_CALJA (Q8HXP0), SODM_CANAX (O13401), SODM_CAPAN (O49066), SODM_CAVPO (P49114), SODM_CHAFE (O96347), SODM_CHLMU (Q9PKA0), SODM_CHLPN (Q9Z9C4), SODM_CHLRE (Q42684), SODM_CHLTR (O84296), SODM_CORDI (P42821), SODM_CRYNH (J9VWW9), SODM_DEBHA (Q6BQZ1), SODM_DEIRA (Q9RUV2), SODM_DICDI (Q55BJ9), SODM_DROME (Q00637), SODM_ECO57 (P66828), SODM_ECOLI (P00448), SODM_ENTFA (Q838I4), SODM_GANMI (Q92429), SODM_GEOSE (P00449), SODM_GLOMM (Q694A3), SODM_HAEDU (O30826), SODM_HAEIN (P43725), SODM_HALH5 (Q9KD10), SODM_HALHI (O08459), SODM_HALMA (Q03302), SODM_HEVBR (P35017), SODM_HORSE (Q9XS41), SODM_HUMAN (P04179), SODM_HYLLA (Q8HXP5), SODM_LACLA (P0A4J1), SODM_LACLM (P0A4J2), SODM_LISIN (Q92BR6), SODM_LISIV (P28763), SODM_LISMO (P28764), SODM_MACFA (Q8HXP3), SODM_MACFU (Q8HXP4), SODM_MACMU (Q8HXP2), SODM_MACNE (Q5FB30), SODM_MANHA (Q59679), SODM_MOUSE (P09671), SODM_MYCAV (P47201), SODM_MYCFO (Q59519), SODM_MYCIA (P46728), SODM_MYCKA (P50912), SODM_MYCLE (P13367), SODM_MYCLP (O86165), SODM_MYCPA (P53647), SODM_MYCS2 (A0R652), SODM_MYCSC (P50913), SODM_MYCSM (P53649), SODM_NEUCR (Q9Y783), SODM_NICPL (P11796), SODM_NOCAS (P53651), SODM_ONCVO (P41981), SODM_ORYSJ (Q43008), SODM_PANTR (Q8HXP7), SODM_PASMU (Q9CPN6), SODM_PEA(P27084), SODM_PENCH (O75007), SODM_PONPY (Q8HXP6), SODM_PROFR (P80293), SODM_PRUPE (Q9SM64), SODM_PSEAE (P53652), SODM_PSEPU (P77929), SODM_RABIT (P41982), SODM_RAOPL (P22799), SODM_RAT(P07895), SODM_SALTI (Q8Z2V9), SODM_SALTY (P43019), SODM_SAPAP (Q8HXP1), SODM_SCHPO (Q9UQX0), SODM_SHIFL (P66829), SODM_STACA (Q9F326), SODM_STAEP (Q8VQ15), SODM_STAEQ (Q5HNZ5), SODM_STAES (P0C0Q6), SODM_STAHJ (Q4L6Q3), SODM_STAS1 (Q49XZ6), SODM_STAXY (Q9K4V3), SODM_STRA3 (P0A4J3), SODM_STRA5 (P0A4J4), SODM_STRAG (P0A4J5), SODM_STRMU (P09738), SODM_STRP1 (P0C0I1), SODM_STRP3 (P0DF72), SODM_STRP6 (Q5XBF8), SODM_STRP8 (Q8P0D4), SODM_STRPN (P0A4J6), SODM_STRPQ (P0DF73), SODM_STRPY (P0C0I0), SODM_STRR6 (P0A4J7), SODM_THEAQ (P53653), SODM_THET2 (P61502), SODM_THET8 (P61503), SODM_VIRHA (Q7SIC3), SODM_XANC8 (P0C0F9), SODM_XANCP (P0C0F8), SODM_YEAST (P00447), SODM_YEREN (P53655)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
4 sequences
SODF_AQUAE (O67470), SODF_AQUPY (Q9X6W9), SODF_PLAMA (Q9Y1B0), SODM_CUPMC (P17550)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
31 sequences
SODF_ANASL (P83157), SODM_ALTAL (P86254), SODM_APOCL (P28766), SODM_AQUCT (P36215), SODM_ARTDA (P83289), SODM_BACCE (P83076), SODM_BRAFL (P28761), SODM_CANLF (P54712), SODM_DESDE (P11419), SODM_EPTST (P28762), SODM_HORVU (P28524), SODM_MYCCE (P53643), SODM_MYCCH (P53644), SODM_MYCMA (P53645), SODM_MYCMR (P53646), SODM_MYCPH (P53648), SODM_MYCSI (P80582), SODM_MYCSZ (P53650), SODM_PALVU (P28765), SODM_PETMA (P28767), SODM_PIG(P28768), SODM_STRAI (O33603), SODM_STRAY (O33605), SODM_STRCB (O54210), SODM_STRGR (P80733), SODM_STRIN (O54233), SODM_STRMT (O33686), SODM_STROR (O54263), SODM_STRPA (O33756), SODM_STRPO (O54266), SODM_STRSL (O33783)» more |
| PDB [Detailed view] |
140 PDB
pdb_00001ap5; pdb_00001ap6; pdb_00001ar4; pdb_00001ar5; pdb_00001avm; pdb_00001b06; pdb_00001bs3; pdb_00001bsm; pdb_00001bt8; pdb_00001d5n; pdb_00001dt0; pdb_00001em1; pdb_00001en4; pdb_00001en5; pdb_00001en6; pdb_00001gn2; pdb_00001gn3; pdb_00001gn4; pdb_00001gn6; pdb_00001i08; pdb_00001i0h; pdb_00001ids; pdb_00001isa; pdb_00001isb; pdb_00001isc; pdb_00001ix9; pdb_00001ixb; pdb_00001jr9; pdb_00001kkc; pdb_00001luv; pdb_00001luw; pdb_00001ma1; pdb_00001mmm; pdb_00001mng; pdb_00001msd; pdb_00001n0j; pdb_00001n0n; pdb_00001p7g; pdb_00001pl4; pdb_00001pm9; pdb_00001qnm; pdb_00001qnn; pdb_00001szx; pdb_00001uer; pdb_00001ues; pdb_00001var; pdb_00001vew; pdb_00001wb7; pdb_00001wb8; pdb_00001xdc; pdb_00001xil; pdb_00001xre; pdb_00001xuq; pdb_00001y67; pdb_00001za5; pdb_00001zlz; pdb_00001zsp; pdb_00001zte; pdb_00001zuq; pdb_00002adp; pdb_00002adq; pdb_00002aw9; pdb_00002bkb; pdb_00002bpi; pdb_00002cdy; pdb_00002ce4; pdb_00002gds; pdb_00002goj; pdb_00002nyb; pdb_00002p4k; pdb_00002qka; pdb_00002qkc; pdb_00002rcv; pdb_00003ak1; pdb_00003ak2; pdb_00003ak3; pdb_00003bfr; pdb_00003cei; pdb_00003dc5; pdb_00003dc6; pdb_00003evk; pdb_00003k9s; pdb_00003kky; pdb_00003lio; pdb_00003lj9; pdb_00003ljf; pdb_00003lsu; pdb_00003mds; pdb_00003ot7; pdb_00003rn4; pdb_00003sdp; pdb_00003tqj; pdb_00004c7u; pdb_00004e4e; pdb_00004f6e; pdb_00004l2a; pdb_00004l2b; pdb_00004l2c; pdb_00004l2d; pdb_00004x9q; pdb_00004yip; pdb_00005ag2; pdb_00005gxo; pdb_00005n56; pdb_00005n57; pdb_00005t30; pdb_00005vf9; pdb_00006elk; pdb_00006ex3; pdb_00006ex4; pdb_00006ex5; pdb_00006pro; pdb_00006qv8; pdb_00006qv9; pdb_00006qzm; pdb_00006qzn; pdb_00006s0d; pdb_00007azq; pdb_00007azr; pdb_00007bjk; pdb_00007kks; pdb_00007kku; pdb_00007kkw; pdb_00007klb; pdb_00008avl; pdb_00008avm; pdb_00008kb3; pdb_00008sks; pdb_00008vhw; pdb_00008vhy; pdb_00008vj0; pdb_00008vj4; pdb_00008vj5; pdb_00008vj8; pdb_00008y17; pdb_00009bvy; pdb_00009bw2; pdb_00009bwm; pdb_00009bwq; pdb_00009bwr » more |