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| Entry: PS00089 |
General information about the entry
| Entry name [info] | RIBORED_LARGE |
| Accession [info] | PS00089 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2001 DATA UPDATE; 07-APR-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00084 |
Name and characterization of the entry
| Description [info] | Ribonucleotide reductase large subunit signature. |
| Pattern [info] |
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)- [PA]. |
Numerical results [info]
| Total number of hits | 89 in 89 different sequences |
| Number of true positive hits | 76 in 76 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 13 in 13 different sequences |
| Number of false negative sequences | 5 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 85.39 % |
| Recall (true positives / (true positives + false negatives)) | 93.83 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
76 sequences
NRDEB_BACSU (O31875 ), NRDEB_BPSPB (O64173 ), RIR1A_MYCS2 (P0CG99 ), RIR1B_MYCS2 (P0CH00 ), RIR1_ALHV1 (O36411 ), RIR1_AQUAE (O66503 ), RIR1_ARATH (Q9SJ20 ), RIR1_ASFB7 (P42491 ), RIR1_ASFK5 (P0C8H7 ), RIR1_ASFM2 (P26685 ), RIR1_ASFP4 (P0C8H8 ), RIR1_ASFWA (P0C8H9 ), RIR1_BACSU (P50620 ), RIR1_BHV1C (P50646 ), RIR1_BPT4 (P32282 ), RIR1_BUCAI (P57276 ), RIR1_BUCAP (Q8K9W3 ), RIR1_BUCBP (Q89AS4 ), RIR1_CAEEL (Q03604 ), RIR1_CHLMU (Q9PL93 ), RIR1_CHLPN (Q9Z6S5 ), RIR1_CHLTR (O84834 ), RIR1_CRYPV (O61065 ), RIR1_DANRE (P79732 ), RIR1_DROME (P48591 ), RIR1_EBVA8 (P0C702 ), RIR1_EBVB9 (P03190 ), RIR1_EBVG (Q3KSU5 ), RIR1_ECOLI (P00452 ), RIR1_EHV1B (P28846 ), RIR1_EHV4 (P50642 ), RIR1_ENCCU (Q8SR37 ), RIR1_GAHVM (Q77MS1 ), RIR1_HAEIN (P43754 ), RIR1_HCMVA (P16782 ), RIR1_HCMVM (Q6SW87 ), RIR1_HELPJ (Q9ZLF9 ), RIR1_HELPY (P55982 ), RIR1_HHV11 (P08543 ), RIR1_HHV23 (P09853 ), RIR1_HHV2H (P89462 ), RIR1_HHV6U (P52343 ), RIR1_HHV6Z (Q9QJ39 ), RIR1_HHV7J (P50641 ), RIR1_HHV8P (Q2HR67 ), RIR1_HUMAN (P23921 ), RIR1_MOUSE (P07742 ), RIR1_MYCBO (P0A5W9 ), RIR1_MYCGE (P47473 ), RIR1_MYCLE (Q9CBQ0 ), RIR1_MYCPN (P78027 ), RIR1_MYCTO (P9WH74 ), RIR1_MYCTU (P9WH75 ), RIR1_NEUCR (Q9UW15 ), RIR1_PLAF4 (P50648 ), RIR1_PLAFG (P50647 ), RIR1_PONAB (Q5R919 ), RIR1_PSHV1 (Q6UDJ2 ), RIR1_SALTY (P37426 ), RIR1_SCHPO (P36602 ), RIR1_SHV21 (Q01037 ), RIR1_SUHVK (P50643 ), RIR1_SYNY3 (P74240 ), RIR1_TREPA (O83972 ), RIR1_TRYBB (O15909 ), RIR1_VACCA (Q76RD8 ), RIR1_VACCC (P20503 ), RIR1_VACCW (P12848 ), RIR1_VAR67 (P0DSV1 ), RIR1_VARV (P0DSV2 ), RIR1_VZVD (P09248 ), RIR1_VZVO (Q4JQV6 ), RIR1_YEAST (P21524 ), RIR3_ECOLI (P39452 ), RIR3_SALTY (Q08698 ), RIR3_YEAST (P21672 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
5 sequences
RIR1_EHV2 (Q66663 ), RIR1_IIV6 (O55716 ), RIR1_MIMIV (Q7T6Y8 ), RIR1_MUHVS (Q06A28 ), RIR1_OSHVF (Q6R7H4 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
13 sequences
NQRB_HAEDU (Q7VNU8 ), NQRB_NEIMA (Q9JVP9 ), NQRB_NEIMB (Q9K0M4 ), NQRB_PASMU (Q9CLB0 ), NQRB_VIBAL (Q56587 ), NQRB_VIBAN (Q75R63 ), NQRB_VIBCB (Q9RFW0 ), NQRB_VIBCH (Q9KPS2 ), NQRB_VIBPA (Q87MA7 ), NQRB_VIBVU (Q8DBJ5 ), NQRB_VIBVY (Q7MIC8 ), NQRB_YERPE (Q8ZBZ1 ), Y058_METJA (Q60366 )» more |
| PDB [Detailed view] |
72 PDB
1PEM; 1PEO; 1PEQ; 1PEU; 1R1R; 1RLR; 1ZYZ; 1ZZD; 2BQ1; 2CVS; 2CVT; 2CVU; 2CVV; 2CVW; 2CVX; 2CVY; 2EUD; 2R1R; 2WGH; 2X0X; 2XAK; 2XAP; 2XAV; 2XAW; 2XAX; 2XAY; 2XAZ; 2XO4; 2XO5; 2ZLF; 2ZLG; 3HNC; 3HND; 3HNE; 3HNF; 3K8T; 3PAW; 3R1R; 3RSR; 3S87; 3S8A; 3S8B; 3S8C; 3TB9; 3TBA; 3UUS; 4ERM; 4ERP; 4R1R; 4X3V; 5CNS; 5CNT; 5CNU; 5CNV; 5D1Y; 5R1R; 5TUS; 6AUI; 6CGL; 6CGM; 6CGN; 6L3R; 6L7L; 6LKM; 6MT9; 6MV9; 6MVE; 6MW3; 6MYX; 6R1R; 6W4X; 7R1R » more |
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