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PROSITE entry PS00089


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PURL: https://purl.expasy.org/prosite/signature/PS00089

Direct ScanProsite submission
General information about the entry

Entry name [info] RIBORED_LARGE
Accession [info] PS00089
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2001 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00084

Name and characterization of the entry

Description [info] Ribonucleotide reductase large subunit signature.
Pattern [info] 
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)-
[PA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 91 in 91 different sequences
Number of true positive hits 77 in 77 different sequences
Number of 'unknown' hits 0
Number of false positive hits 14 in 14 different sequences
Number of false negative sequences 5
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 84.62 %
Recall (true positives / (true positives + false negatives)) 93.90 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 77 sequences 

NRDEB_BACSU (O31875), NRDEB_BPSPB (O64173), RIR1A_MYCS2 (P0CG99), 

RIR1B_MYCS2 (P0CH00), RIR1_ALHV1  (O36411), RIR1_AQUAE  (O66503), 
RIR1_ARATH  (Q9SJ20), RIR1_ASFB7  (P42491), RIR1_ASFK5  (P0C8H7), 
RIR1_ASFM2  (P26685), RIR1_ASFP4  (P0C8H8), RIR1_ASFWA  (P0C8H9), 
RIR1_BACSU  (P50620), RIR1_BHV1C  (P50646), RIR1_BPT4   (P32282), 
RIR1_BUCAI  (P57276), RIR1_BUCAP  (Q8K9W3), RIR1_BUCBP  (Q89AS4), 
RIR1_CAEEL  (Q03604), RIR1_CHLMU  (Q9PL93), RIR1_CHLPN  (Q9Z6S5), 
RIR1_CHLTR  (O84834), RIR1_CRYPV  (O61065), RIR1_DANRE  (P79732), 
RIR1_DROME  (P48591), RIR1_EBVA8  (P0C702), RIR1_EBVB9  (P03190), 
RIR1_EBVG   (Q3KSU5), RIR1_ECOLI  (P00452), RIR1_EHV1B  (P28846), 
RIR1_EHV4   (P50642), RIR1_ENCCU  (Q8SR37), RIR1_GAHVM  (Q77MS1), 
RIR1_HAEIN  (P43754), RIR1_HCMVA  (P16782), RIR1_HCMVM  (Q6SW87), 
RIR1_HELPJ  (Q9ZLF9), RIR1_HELPY  (P55982), RIR1_HHV11  (P08543), 
RIR1_HHV23  (P09853), RIR1_HHV2H  (P89462), RIR1_HHV6U  (P52343), 
RIR1_HHV6Z  (Q9QJ39), RIR1_HHV7J  (P50641), RIR1_HHV8P  (Q2HR67), 
RIR1_HUMAN  (P23921), RIR1_MONPV  (A0A7H0DN52), RIR1_MOUSE  (P07742), 
RIR1_MYCBO  (P0A5W9), RIR1_MYCGE  (P47473), RIR1_MYCLE  (Q9CBQ0), 
RIR1_MYCPN  (P78027), RIR1_MYCTO  (P9WH74), RIR1_MYCTU  (P9WH75), 
RIR1_NEUCR  (Q9UW15), RIR1_PLAF4  (P50648), RIR1_PLAFG  (P50647), 
RIR1_PONAB  (Q5R919), RIR1_PSHV1  (Q6UDJ2), RIR1_SALTY  (P37426), 
RIR1_SCHPO  (P36602), RIR1_SHV21  (Q01037), RIR1_SUHVK  (P50643), 
RIR1_SYNY3  (P74240), RIR1_TREPA  (O83972), RIR1_TRYBB  (O15909), 
RIR1_VACCA  (Q76RD8), RIR1_VACCC  (P20503), RIR1_VACCW  (P12848), 
RIR1_VAR67  (P0DSV1), RIR1_VARV   (P0DSV2), RIR1_VZVD   (P09248), 
RIR1_VZVO   (Q4JQV6), RIR1_YEAST  (P21524), RIR3_ECOLI  (P39452), 
RIR3_SALTY  (Q08698), RIR3_YEAST  (P21672)
» more

UniProtKB/Swiss-Prot
False negative sequences		 5 sequences 

RIR1_EHV2   (Q66663), RIR1_IIV6   (O55716), RIR1_MIMIV  (Q7T6Y8), 

RIR1_MUHVS  (Q06A28), RIR1_OSHVF  (Q6R7H4)
» more

UniProtKB/Swiss-Prot
False positive sequences		 14 sequences 

AMT1_METJA  (Q60366), NQRB_HAEDU  (Q7VNU8), NQRB_NEIMA  (Q9JVP9), 

NQRB_NEIMB  (Q9K0M4), NQRB_PASMU  (Q9CLB0), NQRB_VIBAL  (Q56587), 
NQRB_VIBAN  (Q75R63), NQRB_VIBC1  (Q9RFW0), NQRB_VIBC3  (A5F5X0), 
NQRB_VIBCH  (Q9KPS2), NQRB_VIBPA  (Q87MA7), NQRB_VIBVU  (Q8DBJ5), 
NQRB_VIBVY  (Q7MIC8), NQRB_YERPE  (Q8ZBZ1)
» more

PDB
[Detailed view]		 81 PDB

pdb_00001pem; pdb_00001peo; pdb_00001peq; pdb_00001peu; pdb_00001r1r; pdb_00001rlr; pdb_00001zyz; pdb_00001zzd; pdb_00002bq1; pdb_00002cvs; pdb_00002cvt; pdb_00002cvu; pdb_00002cvv; pdb_00002cvw; pdb_00002cvx; pdb_00002cvy; pdb_00002eud; pdb_00002r1r; pdb_00002wgh; pdb_00002x0x; pdb_00002xak; pdb_00002xap; pdb_00002xav; pdb_00002xaw; pdb_00002xax; pdb_00002xay; pdb_00002xaz; pdb_00002xo4; pdb_00002xo5; pdb_00002zlf; pdb_00002zlg; pdb_00003hnc; pdb_00003hnd; pdb_00003hne; pdb_00003hnf; pdb_00003k8t; pdb_00003paw; pdb_00003r1r; pdb_00003rsr; pdb_00003s87; pdb_00003s8a; pdb_00003s8b; pdb_00003s8c; pdb_00003tb9; pdb_00003tba; pdb_00003uus; pdb_00004erm; pdb_00004erp; pdb_00004r1r; pdb_00004x3v; pdb_00005cns; pdb_00005cnt; pdb_00005cnu; pdb_00005cnv; pdb_00005d1y; pdb_00005r1r; pdb_00005tus; pdb_00006aui; pdb_00006cgl; pdb_00006cgm; pdb_00006cgn; pdb_00006l3r; pdb_00006l7l; pdb_00006lkm; pdb_00006mt9; pdb_00006mv9; pdb_00006mve; pdb_00006mw3; pdb_00006myx; pdb_00006r1r; pdb_00006w4x; pdb_00007agj; pdb_00007r1r; pdb_00007rw6; pdb_00008vhn; pdb_00008vho; pdb_00008vhp; pdb_00008vhq; pdb_00008vhr; pdb_00008vhu; pdb_00009db2
» more