PROSITE entry PS00089
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General information about the entry
| Entry name [info] | RIBORED_LARGE |
| Accession [info] | PS00089 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00084 |
Name and characterization of the entry
| Description [info] | Ribonucleotide reductase large subunit signature. |
| Pattern [info] |
W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)- [PA]. |
Numerical results [info]
| Total number of hits | 91 in 91 different sequences |
| Number of true positive hits | 77 in 77 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 14 in 14 different sequences |
| Number of false negative sequences | 5 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 84.62 % |
| Recall (true positives / (true positives + false negatives)) | 93.90 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
77 sequences
NRDEB_BACSU (O31875), NRDEB_BPSPB (O64173), RIR1A_MYCS2 (P0CG99), RIR1B_MYCS2 (P0CH00), RIR1_ALHV1 (O36411), RIR1_AQUAE (O66503), RIR1_ARATH (Q9SJ20), RIR1_ASFB7 (P42491), RIR1_ASFK5 (P0C8H7), RIR1_ASFM2 (P26685), RIR1_ASFP4 (P0C8H8), RIR1_ASFWA (P0C8H9), RIR1_BACSU (P50620), RIR1_BHV1C (P50646), RIR1_BPT4 (P32282), RIR1_BUCAI (P57276), RIR1_BUCAP (Q8K9W3), RIR1_BUCBP (Q89AS4), RIR1_CAEEL (Q03604), RIR1_CHLMU (Q9PL93), RIR1_CHLPN (Q9Z6S5), RIR1_CHLTR (O84834), RIR1_CRYPV (O61065), RIR1_DANRE (P79732), RIR1_DROME (P48591), RIR1_EBVA8 (P0C702), RIR1_EBVB9 (P03190), RIR1_EBVG (Q3KSU5), RIR1_ECOLI (P00452), RIR1_EHV1B (P28846), RIR1_EHV4 (P50642), RIR1_ENCCU (Q8SR37), RIR1_GAHVM (Q77MS1), RIR1_HAEIN (P43754), RIR1_HCMVA (P16782), RIR1_HCMVM (Q6SW87), RIR1_HELPJ (Q9ZLF9), RIR1_HELPY (P55982), RIR1_HHV11 (P08543), RIR1_HHV23 (P09853), RIR1_HHV2H (P89462), RIR1_HHV6U (P52343), RIR1_HHV6Z (Q9QJ39), RIR1_HHV7J (P50641), RIR1_HHV8P (Q2HR67), RIR1_HUMAN (P23921), RIR1_MONPV (A0A7H0DN52), RIR1_MOUSE (P07742), RIR1_MYCBO (P0A5W9), RIR1_MYCGE (P47473), RIR1_MYCLE (Q9CBQ0), RIR1_MYCPN (P78027), RIR1_MYCTO (P9WH74), RIR1_MYCTU (P9WH75), RIR1_NEUCR (Q9UW15), RIR1_PLAF4 (P50648), RIR1_PLAFG (P50647), RIR1_PONAB (Q5R919), RIR1_PSHV1 (Q6UDJ2), RIR1_SALTY (P37426), RIR1_SCHPO (P36602), RIR1_SHV21 (Q01037), RIR1_SUHVK (P50643), RIR1_SYNY3 (P74240), RIR1_TREPA (O83972), RIR1_TRYBB (O15909), RIR1_VACCA (Q76RD8), RIR1_VACCC (P20503), RIR1_VACCW (P12848), RIR1_VAR67 (P0DSV1), RIR1_VARV (P0DSV2), RIR1_VZVD (P09248), RIR1_VZVO (Q4JQV6), RIR1_YEAST (P21524), RIR3_ECOLI (P39452), RIR3_SALTY (Q08698), RIR3_YEAST (P21672)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
5 sequences
RIR1_EHV2 (Q66663), RIR1_IIV6 (O55716), RIR1_MIMIV (Q7T6Y8), RIR1_MUHVS (Q06A28), RIR1_OSHVF (Q6R7H4)» more |
| UniProtKB/Swiss-Prot False positive sequences |
14 sequences
AMT1_METJA (Q60366), NQRB_HAEDU (Q7VNU8), NQRB_NEIMA (Q9JVP9), NQRB_NEIMB (Q9K0M4), NQRB_PASMU (Q9CLB0), NQRB_VIBAL (Q56587), NQRB_VIBAN (Q75R63), NQRB_VIBC1 (Q9RFW0), NQRB_VIBC3 (A5F5X0), NQRB_VIBCH (Q9KPS2), NQRB_VIBPA (Q87MA7), NQRB_VIBVU (Q8DBJ5), NQRB_VIBVY (Q7MIC8), NQRB_YERPE (Q8ZBZ1)» more |
| PDB [Detailed view] |
80 PDB
1PEM; 1PEO; 1PEQ; 1PEU; 1R1R; 1RLR; 1ZYZ; 1ZZD; 2BQ1; 2CVS; 2CVT; 2CVU; 2CVV; 2CVW; 2CVX; 2CVY; 2EUD; 2R1R; 2WGH; 2X0X; 2XAK; 2XAP; 2XAV; 2XAW; 2XAX; 2XAY; 2XAZ; 2XO4; 2XO5; 2ZLF; 2ZLG; 3HNC; 3HND; 3HNE; 3HNF; 3K8T; 3PAW; 3R1R; 3RSR; 3S87; 3S8A; 3S8B; 3S8C; 3TB9; 3TBA; 3UUS; 4ERM; 4ERP; 4R1R; 4X3V; 5CNS; 5CNT; 5CNU; 5CNV; 5D1Y; 5R1R; 5TUS; 6AUI; 6CGL; 6CGM; 6CGN; 6L3R; 6L7L; 6LKM; 6MT9; 6MV9; 6MVE; 6MW3; 6MYX; 6R1R; 6W4X; 7AGJ; 7R1R; 7RW6; 8VHN; 8VHO; 8VHP; 8VHQ; 8VHR; 8VHU » more |