PROSITE entry PS00093

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	N4_MTASE
Accession [info]	PS00093
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-JUN-1994 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00088

Name and characterization of the entry

Description [info]	N-4 cytosine-specific DNA methylases signature.
Pattern [info]	[LIVMF]-T-S-P-P-[FY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	33 in 33 different sequences
Number of true positive hits	20 in 20 different sequences
Number of 'unknown' hits	0
Number of false positive hits	13 in 13 different sequences
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	60.61 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

20 sequences

MTA1_ANAVA  (P0A462), MTA1_NOSS1  (P0A461), MTB1_BACSQ  (Q9LAI2),

MTB1_GEOSE  (P70986), MTB2_BACAM  (P18051), MTB2_BACIU  (Q45489), 
MTC1_CITFR  (Q04845), MTC9_CITFR  (P14243), MTHZ_METTF  (P29568), 
MTM1_METJA  (Q58392), MTM2_METJA  (Q58843), MTM5_METJA  (Q58893), 
MTM6_METJA  (Q58606), MTMV_KOCVA  (P14244), MTMW_METWO  (O59647), 
MTP2_PROHU  (P11409), MTS1_STRCS  (O52692), MTS1_STRFI  (O52513), 
MTSM_SERMA  (P14230), MTX1_XANCC  (P30774)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False positive sequences

13 sequences

CABIN_HUMAN (Q9Y6J0), CABIN_RAT   (O88480), DEF45_ARATH (Q2V3Y8),

GSH1_ONCVO  (Q9NFN6), MORN1_RAT   (Q641X6), POLN_ONNVG  (P13886), 
POLN_ONNVI  (O90370), POLN_ONNVS  (O90368), RAD16_SCHPO (P36617), 
SMKX_MOUSE  (Q8C0X8), WNK1_MOUSE  (P83741), Y1558_DICDI (Q1ZXI5), 
Y1671_HAEIN (P44287)

» more

PDB
[Detailed view]

1 PDB

1BOO