PROSITE entry PS00105
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General information about the entry
| Entry name [info] | AA_TRANSFER_CLASS_1 |
| Accession [info] | PS00105 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00098 |
Name and characterization of the entry
| Description [info] | Aminotransferases class-I pyridoxal-phosphate attachment site. |
| Pattern [info] |
[GS]-[LIVMFYTAC]-[GSTA]-K-x(2)-[GSALVN]-[LIVMFA]-x-[GNAR]-{V}-R-[LIVMA]-
[GA].
|
Numerical results [info]
| Total number of hits | 186 in 186 different sequences |
| Number of true positive hits | 167 in 167 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 19 in 19 different sequences |
| Number of false negative sequences | 111 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 89.78 % |
| Recall (true positives / (true positives + false negatives)) | 60.07 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | pyridoxal_phosphate at position 4 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
167 sequences
1A111_ARATH (Q9S9U6 ), 1A112_ARATH (Q8GYY0 ), 1A11_ARATH (Q06429 ), 1A11_CUCMA (P23599 ), 1A11_CUCPE (P23279 ), 1A11_ORYSI (A2XLL2 ), 1A11_ORYSJ (Q10DK7 ), 1A11_PRUMU (Q9MB95 ), 1A12_ARATH (Q06402 ), 1A12_CUCMA (Q00257 ), 1A12_CUCPE (Q00379 ), 1A12_ORYSJ (Q7XQ85 ), 1A12_SOLLC (P18485 ), 1A13_ORYSJ (A0A0P0WIY3), 1A13_SOLLC (Q42881 ), 1A14_ARATH (Q43309 ), 1A14_ORYSJ (Q5W6F9 ), 1A14_SOLLC (P29535 ), 1A15_ARATH (Q37001 ), 1A15_ORYSJ (A0A0P0UZP7), 1A16_ARATH (Q9SAR0 ), 1A16_ORYSJ (Q9SNN8 ), 1A17_ARATH (Q9STR4 ), 1A18_ARATH (Q9T065 ), 1A19_ARATH (Q9M2Y8 ), 1A1C_DIACA (P27486 ), 1A1C_MALDO (P37821 ), 1A1C_SOYBN (P31531 ), 1A1C_TOBAC (Q07262 ), 1A1C_VIGRR (Q01912 ), 1A1L1_TAKRU (Q9W698 ), AAPAT_CHLTE (Q8KDS8 ), AAPAT_NITEU (Q82WA8 ), AAPAT_RHILP (O86459 ), AAPAT_RHIME (Q02635 ), AAPAT_RICBR (Q1RGV0 ), AAPAT_RICCN (Q92JE7 ), AAPAT_RICFE (Q4UND3 ), AAPAT_RICPR (Q9ZE56 ), AAPAT_RICTY (Q68XV9 ), AAPAT_THEAQ (O33822 ), AAPAT_THET8 (Q56232 ), AAT1_ARATH (P46643 ), AAT1_BACSU (P53001 ), AAT1_MEDSA (P28011 ), AAT2_ARATH (P46645 ), AAT3_ARATH (P46644 ), AAT3_BACSU (O07587 ), AAT4_ARATH (P46646 ), AAT5_ARATH (P46248 ), AATC_BOVIN (P33097 ), AATC_CAEEL (Q22067 ), AATC_CHICK (P00504 ), AATC_DAUCA (P28734 ), AATC_HORSE (P08906 ), AATC_HUMAN (P17174 ), AATC_MACFA (Q4R5L1 ), AATC_MOUSE (P05201 ), AATC_ORYSJ (P37833 ), AATC_PANTR (A5A6K8 ), AATC_PIG (P00503 ), AATC_PONAB (Q5R691 ), AATC_RAT (P13221 ), AATC_RHIME (O87320 ), AATC_YEAST (P23542 ), AATM_BOVIN (P12344 ), AATM_CHICK (P00508 ), AATM_DANRE (Q7SYK7 ), AATM_DICDI (Q55F21 ), AATM_HORSE (P08907 ), AATM_HUMAN (P00505 ), AATM_LUPAN (P26563 ), AATM_MACFA (Q4R559 ), AATM_MOUSE (P05202 ), AATM_PIG (P00506 ), AATM_PONAB (Q5REB0 ), AATM_RABIT (P12345 ), AATM_RAT (P00507 ), AATM_SCHPO (O94320 ), AATM_XENTR (Q28F67 ), AATM_YEAST (Q01802 ), AAT_BACY2 (P23034 ), AAT_ECOLI (P00509 ), AAT_GEOSE (Q59228 ), AAT_HAEIN (P44425 ), AAT_METJA (Q60317 ), AAT_MUSP7 (C6C2Z3 ), AAT_PSEAE (P72173 ), AAT_PYRAB (Q9V0L2 ), AAT_PYRHO (O58489 ), AAT_RHIME (P58350 ), AAT_RHIML (Q06191 ), AAT_SACS2 (P14909 ), AAT_SALTI (Q56114 ), AAT_SALTY (P58661 ), AAT_STRAW (Q82DR2 ), AAT_STRVG (Q60013 ), AAT_SULAC (Q4J8X2 ), AAT_SULTO (Q972A2 ), AAT_SYNY3 (Q55128 ), AAT_THEKO (O93744 ), AAT_THEMA (Q9X0Y2 ), ARAT2_THELN (H3ZPU1 ), ARUH_PSEAE (Q9HUI9 ), ASDA_COMTE (Q93QX0 ), ASDP_PSESP (Q53IZ1 ), ATTY_BOVIN (Q58CZ9 ), ATTY_DICDI (Q54K95 ), ATTY_HUMAN (P17735 ), ATTY_MOUSE (Q8QZR1 ), ATTY_RAT (P04694 ), ATTY_RHIME (Q02636 ), ATTY_TRYCR (P33447 ), AVTA_MYCTU (P96847 ), BACF_BACSU (P39643 ), BNA3_YEAST (P47039 ), C1436_CAMJE (Q0P8H8 ), COBC_PSEAE (Q9I468 ), COBC_SINSX (P21633 ), COBDQ_LEPIN (Q8EXQ7 ), COBD_SALTI (Q8Z8H8 ), COBD_SALTY (P97084 ), DAPAT_AQUAE (O66630 ), DAPAT_AZOPC (B6YRL2 ), DAPAT_CARHZ (Q3AC10 ), DAPAT_CHLMU (Q9PK04 ), DAPAT_CHLPN (Q9Z856 ), DAPAT_CHLT2 (B0B7W0 ), DAPAT_CHLTA (Q3KLW3 ), DAPAT_CHLTB (B0BC25 ), DAPAT_CHLTR (O84395 ), DAPAT_DEHM1 (Q3Z8H5 ), DAPAT_DEHMB (A5FRC5 ), DAPAT_DEHMC (Q3ZXC8 ), DAPAT_DESAP (B1I544 ), DAPAT_DESVH (Q72BI1 ), DAPAT_DESVM (B8DJJ6 ), DAPAT_DESVV (A1VDD3 ), DAPAT_GLOVI (Q7NDX4 ), DAPAT_HALOH (B8CX89 ), DAPAT_LACP7 (A9KJ19 ), DAPAT_METJA (Q58786 ), DAPAT_METMP (Q6LX26 ), DAPAT_MOOTA (Q2RK33 ), DAPAT_NATTJ (B2A250 ), DAPAT_OLEA2 (Q30ZX9 ), DAPAT_SYNFM (A0LEA5 ), DAPT2_NOSS1 (Q8YP73 ), DAPT2_TRIV2 (Q3MDN5 ), DAPX_BACSU (P16524 ), HIS82_HAEIN (Q57004 ), ISS1_ARATH (Q9C969 ), MFNC_METJA (Q58097 ), NOAT_STRMU (Q8DTM1 ), OXYQ_STRRM (Q3S8P9 ), PAT_ARATH (Q9SIE1 ), PAT_PETHY (E9L7A5 ), PAT_PINPS (Q5F4K8 ), PHHC_PSEAE (P43336 ), TYRB_ECOLI (P04693 ), TYRB_KLEPN (O85746 ), TYRB_SALTY (P74861 ), Y1178_MYCTU (O50434 ), Y2231_MYCTO (P9WQ88 ), Y2231_MYCTU (P9WQ89 ), Y2256_MYCBO (P63501 ), YUGH_BACSU (Q795M6 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
111 sequences
1A110_ARATH (Q9LQ10 ), 1A1L1_BOVIN (Q5E9H2 ), 1A1L1_HUMAN (Q96QU6 ), 1A1L1_MOUSE (A2AIG8 ), 1A1L2_HUMAN (Q4AC99 ), 1A1L2_MOUSE (Q3UX83 ), AAPAT_AQUAE (O67781 ), AAPAT_CERS1 (A3PMF8 ), AATC2_BOVIN (Q2T9S8 ), AATC2_HUMAN (Q8NHS2 ), AATC2_MOUSE (Q7TSV6 ), AATC_DICDI (Q54SF7 ), AATC_SCHPO (O42652 ), ALAA_ECOL6 (P0A960 ), ALAA_ECOLI (P0A959 ), ALAA_HAEIN (P71348 ), ALAA_MYCBO (P63499 ), ALAA_MYCTO (P9WQ90 ), ALAA_MYCTU (P9WQ91 ), ALAA_SHIFL (P0A961 ), ALAC_ECOLI (P77434 ), ARAT1_THELN (H3ZPL1 ), ASPAT_CORGL (Q8NTR2 ), ASPAT_MYCTU (O69689 ), DAPAT_ACAM1 (B0CDH5 ), DAPAT_ACET2 (A3DK17 ), DAPAT_AGARV (C4ZG66 ), DAPAT_ARATH (Q93ZN9 ), DAPAT_BACFN (Q5LC03 ), DAPAT_BACFR (Q64SY6 ), DAPAT_BACTN (Q8AAB8 ), DAPAT_CHLAB (Q5L6M0 ), DAPAT_CHLCV (Q824A4 ), DAPAT_CHLFF (Q253K9 ), DAPAT_CITBB (B5EGX2 ), DAPAT_CROS5 (B1WSG7 ), DAPAT_CYAP4 (B8HJY4 ), DAPAT_DESAH (C0QFJ4 ), DAPAT_DESDA (B8IZX8 ), DAPAT_DESHD (Q18T09 ), DAPAT_DESHY (Q24S01 ), DAPAT_DESOH (A8ZXV5 ), DAPAT_DESPS (Q6AL81 ), DAPAT_GEODF (B9M384 ), DAPAT_GEOMG (Q39Z65 ), DAPAT_GEOSL (Q74GT3 ), DAPAT_GEOSM (C6E9Q7 ), DAPAT_GEOUR (A5GD93 ), DAPAT_GLOC7 (B7KL61 ), DAPAT_HELMI (B0TA38 ), DAPAT_LACE2 (C4Z4Y1 ), DAPAT_LAWIP (Q1MR87 ), DAPAT_LEPBA (B0SEH8 ), DAPAT_LEPBJ (Q04UL5 ), DAPAT_LEPBL (Q04YV8 ), DAPAT_LEPBP (B0SMK7 ), DAPAT_LEPIC (Q72NJ3 ), DAPAT_LEPIN (Q8F814 ), DAPAT_MARSD (C6BUK3 ), DAPAT_METS3 (A5UN82 ), DAPAT_METST (Q2NFU1 ), DAPAT_METTH (O26158 ), DAPAT_MICAN (B0JUM0 ), DAPAT_NOSP7 (B2J2U3 ), DAPAT_PARD8 (A6L8U2 ), DAPAT_PARMW (Q7U4C3 ), DAPAT_PARUW (Q6MDE0 ), DAPAT_PELPD (A1ATI6 ), DAPAT_PHOV8 (A6L7E4 ), DAPAT_PROM0 (A3PEY9 ), DAPAT_PROM1 (A2C4T7 ), DAPAT_PROM3 (A2CC97 ), DAPAT_PROM4 (A9BCJ1 ), DAPAT_PROM5 (A2BYM6 ), DAPAT_PROM9 (Q318P3 ), DAPAT_PROMA (Q7VA14 ), DAPAT_PROMM (Q7V4Z3 ), DAPAT_PROMP (Q7UZZ3 ), DAPAT_PROMS (A2BT75 ), DAPAT_PROMT (Q46IX2 ), DAPAT_RIPO1 (B7JVL5 ), DAPAT_SYNC1 (Q3A1U5 ), DAPAT_SYNE7 (Q31PY6 ), DAPAT_SYNJA (Q2JS04 ), DAPAT_SYNJB (Q2JLL9 ), DAPAT_SYNP2 (B1XKF6 ), DAPAT_SYNP6 (Q5N492 ), DAPAT_SYNPW (A5GIN1 ), DAPAT_SYNR3 (A5GW23 ), DAPAT_SYNS3 (Q0ID68 ), DAPAT_SYNS9 (Q3AW44 ), DAPAT_SYNSC (Q3AMU5 ), DAPAT_SYNY3 (Q55828 ), DAPAT_THEVB (Q8DH57 ), DAPAT_TRIEI (Q10ZC3 ), DAPAT_TRIL1 (B3E933 ), DAPT1_NOSS1 (Q8YM38 ), DAPT1_TRIV2 (Q3MAL4 ), GLII_ASPFU (Q4WMJ9 ), HPGT_AMYOR (O52815 ), LYSN_THET2 (Q72LL6 ), MTNE_BACSU (O31665 ), NAAT1_ORYSJ (A0A0P0VI36), NAATA_HORVU (Q9ST02 ), NAATB_HORVU (Q9ST03 ), SIRI_LEPMC (Q6Q887 ), TCPI_CLAP2 (M1W859 ), TYRB_PARDE (P95468 ), Y104_SACS2 (P95957 ), Y6286_MYCS2 (A0R5R7 ), YBDL_ECOLI (P77806 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
AAT1_PSEMZ (P85906 ), AAT2_PSEMZ (P85951 ), AATC_RABIT (P12343 ), AATM_CATRO (P85310 ), AAT_METEX (P52069 ), AAT_STRGR (P36692 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
19 sequences
BAME1_ARATH (O49545 ), BAME2_ARATH (Q9M2Z1 ), CLP1_NEUCR (Q7SAB7 ), DRB3_ORYSJ (Q0DJA3 ), DRB7_ORYSJ (Q0IV63 ), DRB8_ORYSJ (Q0IQN6 ), HIS81_MANSM (Q65S79 ), HIS82_ARCFU (O28255 ), MILK1_BOVIN (E1BBG2 ), MILK1_HUMAN (Q8N3F8 ), MILK1_MOUSE (Q8BGT6 ), MILK1_RAT (D3ZQL6 ), RBKTP_CUPNH (Q0K3R9 ), RBKTP_CUPTR (B2AIF3 ), RGI5_ARATH (C0LGF5 ), TDCD_YERE8 (A1JIM9 ), TRXR3_MOUSE (Q99MD6 ), WDR46_CANLF (Q5TJE7 ), WDR46_HUMAN (O15213 )» more |
| PDB [Detailed view] |
179 PDB
1AAM; 1AAT; 1AAW; 1AHE; 1AHF; 1AHG; 1AHX; 1AHY; 1AJR; 1AJS; 1AMA; 1AMQ; 1AMR; 1AMS; 1ARG; 1ARH; 1ARI; 1ARS; 1ART; 1ASA; 1ASB; 1ASC; 1ASD; 1ASE; 1ASF; 1ASG; 1ASL; 1ASM; 1ASN; 1B4X; 1B5O; 1B5P; 1B8G; 1BJW; 1BKG; 1BQA; 1BQD; 1BW0; 1C9C; 1CQ6; 1CQ7; 1CQ8; 1CZC; 1CZE; 1G4V; 1G4X; 1G7W; 1G7X; 1GC3; 1GC4; 1GCK; 1IAX; 1IAY; 1IVR; 1IX6; 1IX7; 1IX8; 1LC5; 1LC7; 1LC8; 1LKC; 1M4N; 1M7Y; 1MAP; 1MAQ; 1O4S; 1OXO; 1OXP; 1QIR; 1QIS; 1QIT; 1SPA; 1TAR; 1TAS; 1TAT; 1TOE; 1TOG; 1TOI; 1TOJ; 1TOK; 1X28; 1X29; 1X2A; 1YAA; 1YNU; 1YOO; 2CST; 2D5Y; 2D61; 2D63; 2D64; 2D65; 2D66; 2D7Y; 2D7Z; 2Q7W; 2QA3; 2QB2; 2QB3; 2QBT; 2Z61; 2ZY2; 2ZY3; 2ZY4; 2ZY5; 3AAT; 3ASA; 3ASB; 3B46; 3DYD; 3FSL; 3HLM; 3II0; 3PD6; 3PDB; 3PDX; 3PIU; 3QN6; 3QPG; 3TAT; 3WZF; 3ZZJ; 3ZZK; 4A00; 4F5F; 4F5G; 4F5H; 4F5I; 4F5J; 4F5K; 4F5L; 4F5M; 5AX8; 5BJ3; 5BJ4; 5EAA; 5T4L; 5TON; 5TOQ; 5TOR; 5TOT; 5VJZ; 5VK7; 5VWQ; 5VWR; 5WMH; 5WMI; 5WMK; 5YHV; 6DNA; 6DND; 6F35; 6F5V; 6F77; 6L1L; 6L1N; 6L1O; 6LIG; 7AAT; 7DLW; 7DLY; 7TUR; 8AAT; 8E9C; 8E9D; 8E9J; 8E9K; 8E9L; 8E9M; 8E9N; 8E9O; 8E9P; 8E9Q; 8E9R; 8E9S; 8E9T; 8E9U; 8E9V; 9AAT » more |