PROSITE entry PS00105
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Direct ScanProsite submission
General information about the entry
Entry name [info] | AA_TRANSFER_CLASS_1 |
Accession [info] | PS00105 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00098 |
Name and characterization of the entry
Description [info] | Aminotransferases class-I pyridoxal-phosphate attachment site. |
Pattern [info] |
[GS]-[LIVMFYTAC]-[GSTA]-K-x(2)-[GSALVN]-[LIVMFA]-x-[GNAR]-{V}-R-[LIVMA]- [GA]. |
Numerical results [info]
Total number of hits | 190 in 190 different sequences |
Number of true positive hits | 170 in 170 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 20 in 20 different sequences |
Number of false negative sequences | 112 |
Number of 'partial' sequences | 6 |
Precision (true positives / (true positives + false positives)) | 89.47 % |
Recall (true positives / (true positives + false negatives)) | 60.28 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | pyridoxal_phosphate at position 4 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
170 sequences
1A111_ARATH (Q9S9U6), 1A112_ARATH (Q8GYY0), 1A11_ARATH (Q06429), 1A11_CUCMA (P23599), 1A11_CUCPE (P23279), 1A11_ORYSI (A2XLL2), 1A11_ORYSJ (Q10DK7), 1A11_PRUMU (Q9MB95), 1A12_ARATH (Q06402), 1A12_CUCMA (Q00257), 1A12_CUCPE (Q00379), 1A12_ORYSJ (Q7XQ85), 1A12_SOLLC (P18485), 1A13_ORYSJ (A0A0P0WIY3), 1A13_SOLLC (Q42881), 1A14_ARATH (Q43309), 1A14_ORYSJ (Q5W6F9), 1A14_SOLLC (P29535), 1A15_ARATH (Q37001), 1A15_ORYSJ (A0A0P0UZP7), 1A16_ARATH (Q9SAR0), 1A16_ORYSJ (Q9SNN8), 1A17_ARATH (Q9STR4), 1A18_ARATH (Q9T065), 1A19_ARATH (Q9M2Y8), 1A1C_DIACA (P27486), 1A1C_MALDO (P37821), 1A1C_SOYBN (P31531), 1A1C_TOBAC (Q07262), 1A1C_VIGRR (Q01912), 1A1L1_TAKRU (Q9W698), AAPAT_CHLTE (Q8KDS8), AAPAT_NITEU (Q82WA8), AAPAT_RHILP (O86459), AAPAT_RHIME (Q02635), AAPAT_RICBR (Q1RGV0), AAPAT_RICCN (Q92JE7), AAPAT_RICFE (Q4UND3), AAPAT_RICPR (Q9ZE56), AAPAT_RICTY (Q68XV9), AAPAT_THEAQ (O33822), AAPAT_THET8 (Q56232), AAT1_ARATH (P46643), AAT1_BACSU (P53001), AAT1_MEDSA (P28011), AAT2_ARATH (P46645), AAT3_ARATH (P46644), AAT3_BACSU (O07587), AAT4_ARATH (P46646), AAT5_ARATH (P46248), AATC_BOVIN (P33097), AATC_CAEEL (Q22067), AATC_CHICK (P00504), AATC_DAUCA (P28734), AATC_HORSE (P08906), AATC_HUMAN (P17174), AATC_MACFA (Q4R5L1), AATC_MOUSE (P05201), AATC_ORYSJ (P37833), AATC_PANTR (A5A6K8), AATC_PIG(P00503), AATC_PONAB (Q5R691), AATC_RAT(P13221), AATC_RHIME (O87320), AATC_YEAST (P23542), AATM_BOVIN (P12344), AATM_CHICK (P00508), AATM_DANRE (Q7SYK7), AATM_DICDI (Q55F21), AATM_HORSE (P08907), AATM_HUMAN (P00505), AATM_LUPAN (P26563), AATM_MACFA (Q4R559), AATM_MOUSE (P05202), AATM_PIG(P00506), AATM_PONAB (Q5REB0), AATM_RABIT (P12345), AATM_RAT(P00507), AATM_SCHPO (O94320), AATM_XENTR (Q28F67), AATM_YEAST (Q01802), AAT_BACY2 (P23034), AAT_ECOLI (P00509), AAT_GEOSE (Q59228), AAT_HAEIN (P44425), AAT_METJA (Q60317), AAT_MUSP7 (C6C2Z3), AAT_PSEAE (P72173), AAT_PYRAB (Q9V0L2), AAT_PYRHO (O58489), AAT_RHIME (P58350), AAT_RHIML (Q06191), AAT_SACS2 (P14909), AAT_SALTI (Q56114), AAT_SALTY (P58661), AAT_STRAW (Q82DR2), AAT_STRVG (Q60013), AAT_SULAC (Q4J8X2), AAT_SULTO (Q972A2), AAT_SYNY3 (Q55128), AAT_THEKO (O93744), AAT_THEMA (Q9X0Y2), ARAT2_THELN (H3ZPU1), ARGM_STREL (M1T1K4), ARUH_PSEAE (Q9HUI9), ASDA_COMTE (Q93QX0), ASDP_PSESP (Q53IZ1), ATTY_BOVIN (Q58CZ9), ATTY_DICDI (Q54K95), ATTY_HUMAN (P17735), ATTY_MOUSE (Q8QZR1), ATTY_RAT(P04694), ATTY_RHIME (Q02636), ATTY_TRYCR (P33447), AVTA_MYCTU (P96847), BACF_BACSU (P39643), BNA3_YEAST (P47039), C1436_CAMJE (Q0P8H8), COBC_PSEAE (Q9I468), COBC_SINSX (P21633), COBDQ_LEPIN (Q8EXQ7), COBD_SALTI (Q8Z8H8), COBD_SALTY (P97084), DAPAT_AQUAE (O66630), DAPAT_AZOPC (B6YRL2), DAPAT_CARHZ (Q3AC10), DAPAT_CHLMU (Q9PK04), DAPAT_CHLPN (Q9Z856), DAPAT_CHLT2 (B0B7W0), DAPAT_CHLTA (Q3KLW3), DAPAT_CHLTB (B0BC25), DAPAT_CHLTR (O84395), DAPAT_DEHM1 (Q3Z8H5), DAPAT_DEHMB (A5FRC5), DAPAT_DEHMC (Q3ZXC8), DAPAT_DESAP (B1I544), DAPAT_GLOVI (Q7NDX4), DAPAT_HALOH (B8CX89), DAPAT_LACP7 (A9KJ19), DAPAT_METJA (Q58786), DAPAT_METMP (Q6LX26), DAPAT_MOOTA (Q2RK33), DAPAT_NATTJ (B2A250), DAPAT_NITV2 (Q72BI1), DAPAT_NITV4 (A1VDD3), DAPAT_NITV9 (B8DJJ6), DAPAT_OLEA2 (Q30ZX9), DAPAT_SYNFM (A0LEA5), DAPT2_NOSS1 (Q8YP73), DAPT2_TRIV2 (Q3MDN5), DAPX_BACSU (P16524), FRBH_STRR3 (Q0ZQ41), HIS82_HAEIN (Q57004), ISS1_ARATH (Q9C969), MFNC_METJA (Q58097), NOAT_STRMU (Q8DTM1), OXYQ_STRRM (Q3S8P9), PAT_ARATH (Q9SIE1), PAT_PETHY (E9L7A5), PAT_PINPS (Q5F4K8), PHHC_PSEAE (P43336), TYRB_ECOLI (P04693), TYRB_KLEPN (O85746), TYRB_SALTY (P74861), UCDG_ASPUT (A0A0C1E1D0), Y1178_MYCTU (O50434), Y2231_MYCTO (P9WQ88), Y2231_MYCTU (P9WQ89), Y2256_MYCBO (P63501), YUGH_BACSU (Q795M6)» more
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UniProtKB/Swiss-Prot False negative sequences |
112 sequences
1A110_ARATH (Q9LQ10), 1A1L1_BOVIN (Q5E9H2), 1A1L1_HUMAN (Q96QU6), 1A1L1_MOUSE (A2AIG8), 1A1L2_HUMAN (Q4AC99), 1A1L2_MOUSE (Q3UX83), AAPAT_AQUAE (O67781), AAPAT_CERS1 (A3PMF8), AATC2_BOVIN (Q2T9S8), AATC2_HUMAN (Q8NHS2), AATC2_MOUSE (Q7TSV6), AATC_DICDI (Q54SF7), AATC_SCHPO (O42652), ALAA_ECOL6 (P0A960), ALAA_ECOLI (P0A959), ALAA_HAEIN (P71348), ALAA_MYCBO (P63499), ALAA_MYCTO (P9WQ90), ALAA_MYCTU (P9WQ91), ALAA_SHIFL (P0A961), ALAC_ECOLI (P77434), ARAT1_THELN (H3ZPL1), ASPAT_CORGL (Q8NTR2), ASPAT_MYCTU (O69689), DAPAT_ACAM1 (B0CDH5), DAPAT_ACET2 (A3DK17), DAPAT_AGARV (C4ZG66), DAPAT_ARATH (Q93ZN9), DAPAT_BACFN (Q5LC03), DAPAT_BACFR (Q64SY6), DAPAT_BACTN (Q8AAB8), DAPAT_CHLAB (Q5L6M0), DAPAT_CHLCV (Q824A4), DAPAT_CHLFF (Q253K9), DAPAT_CITBB (B5EGX2), DAPAT_CROS5 (B1WSG7), DAPAT_CYAP4 (B8HJY4), DAPAT_DESAH (C0QFJ4), DAPAT_DESDA (B8IZX8), DAPAT_DESHD (Q18T09), DAPAT_DESHY (Q24S01), DAPAT_DESOH (A8ZXV5), DAPAT_DESPS (Q6AL81), DAPAT_GEODF (B9M384), DAPAT_GEOMG (Q39Z65), DAPAT_GEOSL (Q74GT3), DAPAT_GEOSM (C6E9Q7), DAPAT_GEOUR (A5GD93), DAPAT_GLOC7 (B7KL61), DAPAT_HELMI (B0TA38), DAPAT_LACE2 (C4Z4Y1), DAPAT_LAWIP (Q1MR87), DAPAT_LEPBA (B0SEH8), DAPAT_LEPBJ (Q04UL5), DAPAT_LEPBL (Q04YV8), DAPAT_LEPBP (B0SMK7), DAPAT_LEPIC (Q72NJ3), DAPAT_LEPIN (Q8F814), DAPAT_MARSD (C6BUK3), DAPAT_METS3 (A5UN82), DAPAT_METST (Q2NFU1), DAPAT_METTH (O26158), DAPAT_MICAN (B0JUM0), DAPAT_NOSP7 (B2J2U3), DAPAT_PARD8 (A6L8U2), DAPAT_PARMW (Q7U4C3), DAPAT_PARUW (Q6MDE0), DAPAT_PELPD (A1ATI6), DAPAT_PHOV8 (A6L7E4), DAPAT_PICP2 (B1XKF6), DAPAT_PROM0 (A3PEY9), DAPAT_PROM1 (A2C4T7), DAPAT_PROM3 (A2CC97), DAPAT_PROM4 (A9BCJ1), DAPAT_PROM5 (A2BYM6), DAPAT_PROM9 (Q318P3), DAPAT_PROMA (Q7VA14), DAPAT_PROMM (Q7V4Z3), DAPAT_PROMP (Q7UZZ3), DAPAT_PROMS (A2BT75), DAPAT_PROMT (Q46IX2), DAPAT_RIPO1 (B7JVL5), DAPAT_SYNC1 (Q3A1U5), DAPAT_SYNE7 (Q31PY6), DAPAT_SYNJA (Q2JS04), DAPAT_SYNJB (Q2JLL9), DAPAT_SYNP6 (Q5N492), DAPAT_SYNPW (A5GIN1), DAPAT_SYNR3 (A5GW23), DAPAT_SYNS3 (Q0ID68), DAPAT_SYNS9 (Q3AW44), DAPAT_SYNSC (Q3AMU5), DAPAT_SYNY3 (Q55828), DAPAT_THEVB (Q8DH57), DAPAT_TRIEI (Q10ZC3), DAPAT_TRIL1 (B3E933), DAPT1_NOSS1 (Q8YM38), DAPT1_TRIV2 (Q3MAL4), GLII_ASPFU (Q4WMJ9), HPGT_AMYOR (O52815), LYSN_THET2 (Q72LL6), MRSB_PSESY (D5FKJ2), MTNE_BACSU (O31665), NAAT1_ORYSJ (A0A0P0VI36), NAATA_HORVU (Q9ST02), NAATB_HORVU (Q9ST03), SIRI_LEPMC (Q6Q887), TCPI_CLAP2 (M1W859), TYRB_PARDE (P95468), Y104_SACS2 (P95957), Y6286_MYCS2 (A0R5R7), YBDL_ECOLI (P77806)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
AAT1_PSEMZ (P85906), AAT2_PSEMZ (P85951), AATC_RABIT (P12343), AATM_CATRO (P85310), AAT_METEX (P52069), AAT_STRGR (P36692)» more |
UniProtKB/Swiss-Prot False positive sequences |
20 sequences
BAME1_ARATH (O49545), BAME2_ARATH (Q9M2Z1), CLP1_NEUCR (Q7SAB7), DRB3_ORYSJ (Q0DJA3), DRB7_ORYSJ (Q0IV63), DRB8_ORYSJ (Q0IQN6), HIS81_MANSM (Q65S79), HIS82_ARCFU (O28255), LR3E_METSD (A0A172U6X0), MILK1_BOVIN (E1BBG2), MILK1_HUMAN (Q8N3F8), MILK1_MOUSE (Q8BGT6), MILK1_RAT (D3ZQL6), RBKTP_CUPNH (Q0K3R9), RBKTP_CUPTR (B2AIF3), RGI5_ARATH (C0LGF5), TDCD_YERE8 (A1JIM9), TRXR3_MOUSE (Q99MD6), WDR46_CANLF (Q5TJE7), WDR46_HUMAN (O15213)» more |
PDB [Detailed view] |
180 PDB
1AAM; 1AAT; 1AAW; 1AHE; 1AHF; 1AHG; 1AHX; 1AHY; 1AJR; 1AJS; 1AMA; 1AMQ; 1AMR; 1AMS; 1ARG; 1ARH; 1ARI; 1ARS; 1ART; 1ASA; 1ASB; 1ASC; 1ASD; 1ASE; 1ASF; 1ASG; 1ASL; 1ASM; 1ASN; 1B4X; 1B5O; 1B5P; 1B8G; 1BJW; 1BKG; 1BQA; 1BQD; 1BW0; 1C9C; 1CQ6; 1CQ7; 1CQ8; 1CZC; 1CZE; 1G4V; 1G4X; 1G7W; 1G7X; 1GC3; 1GC4; 1GCK; 1IAX; 1IAY; 1IVR; 1IX6; 1IX7; 1IX8; 1LC5; 1LC7; 1LC8; 1LKC; 1M4N; 1M7Y; 1MAP; 1MAQ; 1O4S; 1OXO; 1OXP; 1QIR; 1QIS; 1QIT; 1SPA; 1TAR; 1TAS; 1TAT; 1TOE; 1TOG; 1TOI; 1TOJ; 1TOK; 1X28; 1X29; 1X2A; 1YAA; 1YNU; 1YOO; 2CST; 2D5Y; 2D61; 2D63; 2D64; 2D65; 2D66; 2D7Y; 2D7Z; 2Q7W; 2QA3; 2QB2; 2QB3; 2QBT; 2Z61; 2ZY2; 2ZY3; 2ZY4; 2ZY5; 3AAT; 3ASA; 3ASB; 3B46; 3DYD; 3FSL; 3HLM; 3II0; 3PD6; 3PDB; 3PDX; 3PIU; 3QN6; 3QPG; 3TAT; 3WZF; 3ZZJ; 3ZZK; 4A00; 4F5F; 4F5G; 4F5H; 4F5I; 4F5J; 4F5K; 4F5L; 4F5M; 5AX8; 5BJ3; 5BJ4; 5EAA; 5T4L; 5TON; 5TOQ; 5TOR; 5TOT; 5VJZ; 5VK7; 5VWQ; 5VWR; 5WMH; 5WMI; 5WMK; 5YHV; 6DNA; 6DND; 6F35; 6F5V; 6F77; 6L1L; 6L1N; 6L1O; 6LIG; 7AAT; 7DLW; 7DLY; 7TUR; 8AAT; 8E9C; 8E9D; 8E9J; 8E9K; 8E9L; 8E9M; 8E9N; 8E9O; 8E9P; 8E9Q; 8E9R; 8E9S; 8E9T; 8E9U; 8E9V; 8SKR; 9AAT » more |