PROSITE entry PS00187
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General information about the entry
Entry name [info] | TPP_ENZYMES |
Accession [info] | PS00187 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00166 |
Name and characterization of the entry
Description [info] | Thiamine pyrophosphate enzymes signature. |
Pattern [info] |
[LIVMF]-[GSA]-x(5)-P-x(4)-[LIVMFYW]-x-[LIVMF]-x-G-D-[GSA]-[GSAC]. |
Numerical results [info]
Total number of hits | 115 in 115 different sequences |
Number of true positive hits | 108 in 108 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 7 in 7 different sequences |
Number of false negative sequences | 82 |
Number of 'partial' sequences | 5 |
Precision (true positives / (true positives + false positives)) | 93.91 % |
Recall (true positives / (true positives + false negatives)) | 56.84 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
108 sequences
ARUI_PSEAE (Q9HUI8), CEAS_STRCL (Q9LCV9), DCIP_ENTCL (P23234), HACL1_DICDI (Q54DA9), HACL2_BOVIN (A6QQT9), HACL2_CAEEL (O61856), HACL2_DANRE (Q6NV04), HACL2_HUMAN (A1L0T0), HACL2_MOUSE (Q8BU33), HACL2_XENLA (Q6DDK5), HACL_ACTC0 (P0DUV9), HACL_ARATH (Q9LF46), HACL_ORYSJ (Q0JMH0), ILVB1_BRANA (P27818), ILVB1_MYCTO (P9WG40), ILVB1_MYCTU (P9WG41), ILVB1_TOBAC (P09342), ILVB2_BRANA (P14874), ILVB2_MYCTU (O06335), ILVB2_TOBAC (P09114), ILVB3_BRANA (P27819), ILVB_ARATH (P17597), ILVB_CORGL (P42463), ILVB_CRYNH (Q6SSJ3), ILVB_CRYNJ (Q5KPJ5), ILVB_CYACA (O19929), ILVB_ECOLI (P08142), ILVB_GUITH (O78518), ILVB_KLEPN (P27696), ILVB_LACLA (Q02137), ILVB_METAO (O08353), ILVB_METJA (Q57725), ILVB_MYCAV (Q59498), ILVB_MYCBO (P0A623), ILVB_MYCLE (O33112), ILVB_NEOYE (Q1XDF6), ILVB_PARMW (Q7U5G1), ILVB_PORPU (P69683), ILVB_PORUM (P69684), ILVB_RAOTE (Q04524), ILVB_SCHPO (P36620), ILVB_YEAST (P07342), ILVG_ECOLI (P0DP90), ILVG_MYCBO (P66947), ILVG_MYCTO (P9WG38), ILVG_MYCTU (P9WG39), ILVI_BUCAI (P57321), ILVI_BUCAP (O85293), ILVI_BUCBP (Q89AP7), ILVI_BUCSC (Q9RQ65), ILVI_ECOLI (P00893), ILVI_HAEIN (P45261), ILVI_SALTY (P40811), ILVX_BACSU (Q04789), IOLD1_BACCZ (Q63B73), IOLD2_BACCZ (Q4V1F5), IOLD_ALKCK (Q5WKY8), IOLD_BACAA (C3PAZ3), IOLD_BACAC (C3LHY1), IOLD_BACAH (A0REB6), IOLD_BACAN (Q81QB5), IOLD_BACC0 (B7JPM3), IOLD_BACC3 (C1EVJ3), IOLD_BACHK (Q6HIK2), IOLD_BACLD (Q65D03), IOLD_BACSU (P42415), IOLD_BACVZ (A7ZAH8), IOLD_CLOBA (B2V4K0), IOLD_CLOBB (B2TJ86), IOLD_CLOP1 (Q0TUZ2), IOLD_CLOPE (Q8XP76), IOLD_GEOKA (Q5KYR0), IOLD_GEOTN (A4IPB6), IOLD_HALH5 (Q9KAG9), IOLD_LACCA (A5YBJ6), KDC_MYCA1 (A0QBE6), KDC_MYCBO (Q7U140), KDC_MYCBP (A1KGY5), KDC_MYCPA (Q742Q2), KDC_MYCTA (A5U0P1), KDC_MYCTO (P9WG36), KDC_MYCTU (P9WG37), KDC_MYCUA (A0PL16), MDLC_PSEAE (Q9HUR2), MDLC_PSEPU (P20906), PDC1_ARATH (O82647), PDC1_CANAL (P83779), PDC1_CANGA (Q6FJA3), PDC1_KLULA (Q12629), PDC1_KLUMA (P33149), PDC1_YEAST (P06169), PDC2_SCHPO (Q92345), PDC3_ARATH (Q9M039), PDC3_SCHPO (Q9P7P6), PDC4_ARATH (Q9M040), PDC5_YEAST (P16467), PDC6_YEAST (P26263), PDC_NEUCR (P33287), PDC_ZYMMO (P06672), POXB_ECOLI (P07003), POXB_LACPL (P37063), POXB_STRPN (Q54970), PXP1_YEAST (P39994), XSC_DESTI (Q93PS3), XSC_RHIME (Q92UW6), XSC_RHOCB (D5AKX8), XSC_ROSNI (A3SR25), YDAP_BACSU (P96591)» more
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UniProtKB/Swiss-Prot False negative sequences |
82 sequences
COMDE_METAC (Q8TKU6), COME_METJA (P58416), COME_METTH (O27275), DCIP_AZOBR (P51852), HACL1_HUMAN (Q9UJ83), HACL1_MOUSE (Q9QXE0), HACL1_RAT (Q8CHM7), ILVB_BACSU (P37251), IOLD_CLOTE (Q898E8), IOLD_LISIN (Q92EQ4), IOLD_LISMF (Q723S8), IOLD_LISMO (Q8Y9Y1), KDC_MYCLE (Q9CBD6), KDC_MYCS2 (A0R480), OXC_ECO57 (P0AFI1), OXC_ECOLI (P0AFI0), OXC_OXAFO (P40149), PDC1_MAIZE (P28516), PDC1_ORYSI (A2Y5L9), PDC1_ORYSJ (Q0DHF6), PDC1_PEA(P51850), PDC1_SCHPO (Q09737), PDC2_ARATH (Q9FFT4), PDC2_ORYSI (A2XFI3), PDC2_ORYSJ (Q10MW3), PDC2_TOBAC (P51846), PDC3_ORYSI (A2YQ76), PDC3_ORYSJ (Q0D3D2), PDC4_SCHPO (O42873), PDC_ASPFU (Q4WXX9), PDC_ASPOR (Q2UKV4), PDC_ASPPA (P51844), PDC_ASPTN (Q0CNV1), PDC_EMENI (P87208), PDC_HANUV (P34734), PHK1_LACPL (Q88U67), PHK1_NOSS1 (Q8YWW1), PHK1_RHIME (Q92T74), PHK2_LACPL (Q88S87), PHK2_NOSS1 (Q8YTZ6), PHK2_RHIME (Q92ZA4), PHK_BEII9 (B2IGR2), PHK_BIFA0 (B8DUT6), PHK_BRADU (Q89S87), PHK_BRUA2 (Q2YK44), PHK_BRUME (Q8YBL8), PHK_BRUSU (Q8FWR0), PHK_CHLTE (Q8KCA0), PHK_CLOAB (Q97JE3), PHK_GLOVI (Q7NLX2), PHK_LACLA (Q9CFH4), PHK_LATSS (Q38YY6), PHK_METCA (Q608B0), PHK_MYCA1 (A0QGK3), PHK_MYCPA (Q73ZM8), PHK_NITEU (Q82T07), PHK_NITMU (Q2YAC5), PHK_NOCFA (Q5Z066), PHK_PARUW (Q6MFC0), PHK_PEDPA (Q03H73), PHK_PSEP1 (A5W384), PHK_RHILO (Q988V7), PHK_RHOBA (Q7UH14), PHK_RHOP2 (Q2ITA9), PHK_RHOPA (Q6N976), PHK_RHOPB (Q20ZU5), PHK_RHOPS (Q13B10), PHK_RHOPT (B3Q8J5), PHK_SCHPO (O74770), PHK_STRAW (Q82NM9), PHK_STRCO (Q8CK51), PHK_SYNE7 (Q31LF9), PHK_SYNP6 (Q5N0G7), PHK_SYNY3 (P74690), PHK_THEVB (Q8DJN6), PIGD_SERMA (Q5W251), PIGD_SERS3 (Q5W268), PPD_STRHY (Q54271), XFP_BIFAS (Q9AEM9), XPKA_LACPE (Q937F6), XSC_ALCXX (Q84H41), XSC_CASDE (Q84H44)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
5 sequences
ILVB_ARTPT (P27868), PDC1_TOBAC (P51845), PDC2_MAIZE (Q05326), PDC2_PEA(P51851), PDC3_MAIZE (Q05327)» more |
UniProtKB/Swiss-Prot False positive sequences |
7 sequences
COLB_DICDI (Q8T2A1), DXS1_CERS4 (Q3J1A8), DXS1_ROSDO (Q16DV7), DXS_FUSNN (Q8R639), DXS_RHOCA (P26242), ISOA2_ORYSJ (Q6AU80), NPHN_MOUSE (Q9QZS7)» more |
PDB [Detailed view] |
125 PDB
1BFD; 1JSC; 1MCZ; 1N0H; 1OVM; 1OZF; 1OZG; 1OZH; 1PI3; 1PO7; 1POW; 1POX; 1PVD; 1PYD; 1Q6Z; 1QPB; 1T9A; 1T9B; 1T9C; 1T9D; 1UPA; 1UPB; 1UPC; 1Y9D; 1YBH; 1YHY; 1YHZ; 1YI0; 1YI1; 1YNO; 1Z8N; 1ZPD; 2EZ4; 2EZ8; 2EZ9; 2EZT; 2EZU; 2FN3; 2FWN; 2IHT; 2IHU; 2IHV; 2V3W; 2VJY; 2VK1; 2VK4; 2VK8; 2W93; 2WVA; 2WVG; 2WVH; 3E9Y; 3EA4; 3EY9; 3EYA; 3F6B; 3F6E; 3FSJ; 3FZN; 3OE1; 4GG1; 4GM0; 4GM1; 4GM4; 4GP9; 4GPE; 4JD5; 4JU8; 4JU9; 4JUA; 4JUB; 4JUC; 4JUD; 4JUF; 4K9K; 4K9L; 4K9M; 4K9N; 4K9O; 4K9P; 4MPJ; 4MPP; 4MPR; 4MQ5; 4MZX; 4QEL; 4ZP1; 5D6R; 5DEI; 5DGD; 5DGT; 5DX6; 5FEM; 5IMS; 5K2O; 5K3S; 5K6Q; 5K6R; 5K6T; 5TMA; 5WDG; 5WJ1; 5WKC; 6BD3; 6BD9; 6EFG; 6EFH; 6HAF; 6LPI; 6M2Y; 6M2Z; 6U9D; 6U9H; 6VZ8; 7PT1; 7PT2; 7PT3; 7PT4; 7STQ; 7TZZ; 7U1D; 7U1U; 7U25; 8ET4; 8ET5 » more |