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Entry: PS00187 |
Entry name [info] | TPP_ENZYMES |
Accession [info] | PS00187 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE; 14-DEC-2022 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00166 |
Description [info] | Thiamine pyrophosphate enzymes signature. |
Pattern [info] |
[LIVMF]-[GSA]-x(5)-P-x(4)-[LIVMFYW]-x-[LIVMF]-x-G-D-[GSA]-[GSAC]. |
Total number of hits | 114 in 114 different sequences |
Number of true positive hits | 108 in 108 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 6 in 6 different sequences |
Number of false negative sequences | 82 |
Number of 'partial' sequences | 5 |
Precision (true positives / (true positives + false positives)) | 94.74 % |
Recall (true positives / (true positives + false negatives)) | 56.84 % |
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
108 sequences
ARUI_PSEAE (Q9HUI8 ), CEAS_STRCL (Q9LCV9 ), DCIP_ENTCL (P23234 ), HACL1_DICDI (Q54DA9 ), HACL2_BOVIN (A6QQT9 ), HACL2_CAEEL (O61856 ), HACL2_DANRE (Q6NV04 ), HACL2_HUMAN (A1L0T0 ), HACL2_MOUSE (Q8BU33 ), HACL2_XENLA (Q6DDK5 ), HACL_ACTC0 (P0DUV9 ), HACL_ARATH (Q9LF46 ), HACL_ORYSJ (Q0JMH0 ), ILVB1_BRANA (P27818 ), ILVB1_MYCTO (P9WG40 ), ILVB1_MYCTU (P9WG41 ), ILVB1_TOBAC (P09342 ), ILVB2_BRANA (P14874 ), ILVB2_MYCTU (O06335 ), ILVB2_TOBAC (P09114 ), ILVB3_BRANA (P27819 ), ILVB_ARATH (P17597 ), ILVB_CORGL (P42463 ), ILVB_CRYNH (Q6SSJ3 ), ILVB_CRYNJ (Q5KPJ5 ), ILVB_CYACA (O19929 ), ILVB_ECOLI (P08142 ), ILVB_GUITH (O78518 ), ILVB_KLEPN (P27696 ), ILVB_LACLA (Q02137 ), ILVB_METAO (O08353 ), ILVB_METJA (Q57725 ), ILVB_MYCAV (Q59498 ), ILVB_MYCBO (P0A623 ), ILVB_MYCLE (O33112 ), ILVB_NEOYE (Q1XDF6 ), ILVB_PARMW (Q7U5G1 ), ILVB_PORPU (P69683 ), ILVB_PORUM (P69684 ), ILVB_RAOTE (Q04524 ), ILVB_SCHPO (P36620 ), ILVB_YEAST (P07342 ), ILVG_ECOLI (P0DP90 ), ILVG_MYCBO (P66947 ), ILVG_MYCTO (P9WG38 ), ILVG_MYCTU (P9WG39 ), ILVI_BUCAI (P57321 ), ILVI_BUCAP (O85293 ), ILVI_BUCBP (Q89AP7 ), ILVI_BUCSC (Q9RQ65 ), ILVI_ECOLI (P00893 ), ILVI_HAEIN (P45261 ), ILVI_SALTY (P40811 ), ILVX_BACSU (Q04789 ), IOLD1_BACCZ (Q63B73 ), IOLD2_BACCZ (Q4V1F5 ), IOLD_ALKCK (Q5WKY8 ), IOLD_BACAA (C3PAZ3 ), IOLD_BACAC (C3LHY1 ), IOLD_BACAH (A0REB6 ), IOLD_BACAN (Q81QB5 ), IOLD_BACC0 (B7JPM3 ), IOLD_BACC3 (C1EVJ3 ), IOLD_BACHK (Q6HIK2 ), IOLD_BACLD (Q65D03 ), IOLD_BACSU (P42415 ), IOLD_BACVZ (A7ZAH8 ), IOLD_CLOBA (B2V4K0 ), IOLD_CLOBB (B2TJ86 ), IOLD_CLOP1 (Q0TUZ2 ), IOLD_CLOPE (Q8XP76 ), IOLD_GEOKA (Q5KYR0 ), IOLD_GEOTN (A4IPB6 ), IOLD_HALH5 (Q9KAG9 ), IOLD_LACCA (A5YBJ6 ), KDC_MYCA1 (A0QBE6 ), KDC_MYCBO (Q7U140 ), KDC_MYCBP (A1KGY5 ), KDC_MYCPA (Q742Q2 ), KDC_MYCTA (A5U0P1 ), KDC_MYCTO (P9WG36 ), KDC_MYCTU (P9WG37 ), KDC_MYCUA (A0PL16 ), MDLC_PSEAE (Q9HUR2 ), MDLC_PSEPU (P20906 ), PDC1_ARATH (O82647 ), PDC1_CANAL (P83779 ), PDC1_CANGA (Q6FJA3 ), PDC1_KLULA (Q12629 ), PDC1_KLUMA (P33149 ), PDC1_YEAST (P06169 ), PDC2_SCHPO (Q92345 ), PDC3_ARATH (Q9M039 ), PDC3_SCHPO (Q9P7P6 ), PDC4_ARATH (Q9M040 ), PDC5_YEAST (P16467 ), PDC6_YEAST (P26263 ), PDC_NEUCR (P33287 ), PDC_ZYMMO (P06672 ), POXB_ECOLI (P07003 ), POXB_LACPL (P37063 ), POXB_STRPN (Q54970 ), PXP1_YEAST (P39994 ), XSC_DESTI (Q93PS3 ), XSC_RHIME (Q92UW6 ), XSC_RHOCB (D5AKX8 ), XSC_ROSNI (A3SR25 ), YDAP_BACSU (P96591 )» more
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UniProtKB/Swiss-Prot False negative sequences |
82 sequences
COMDE_METAC (Q8TKU6 ), COME_METJA (P58416 ), COME_METTH (O27275 ), DCIP_AZOBR (P51852 ), HACL1_HUMAN (Q9UJ83 ), HACL1_MOUSE (Q9QXE0 ), HACL1_RAT (Q8CHM7 ), ILVB_BACSU (P37251 ), IOLD_CLOTE (Q898E8 ), IOLD_LISIN (Q92EQ4 ), IOLD_LISMF (Q723S8 ), IOLD_LISMO (Q8Y9Y1 ), KDC_MYCLE (Q9CBD6 ), KDC_MYCS2 (A0R480 ), OXC_ECO57 (P0AFI1 ), OXC_ECOLI (P0AFI0 ), OXC_OXAFO (P40149 ), PDC1_MAIZE (P28516 ), PDC1_ORYSI (A2Y5L9 ), PDC1_ORYSJ (Q0DHF6 ), PDC1_PEA (P51850 ), PDC1_SCHPO (Q09737 ), PDC2_ARATH (Q9FFT4 ), PDC2_ORYSI (A2XFI3 ), PDC2_ORYSJ (Q10MW3 ), PDC2_TOBAC (P51846 ), PDC3_ORYSI (A2YQ76 ), PDC3_ORYSJ (Q0D3D2 ), PDC4_SCHPO (O42873 ), PDC_ASPFU (Q4WXX9 ), PDC_ASPOR (Q2UKV4 ), PDC_ASPPA (P51844 ), PDC_ASPTN (Q0CNV1 ), PDC_EMENI (P87208 ), PDC_HANUV (P34734 ), PHK1_LACPL (Q88U67 ), PHK1_NOSS1 (Q8YWW1 ), PHK1_RHIME (Q92T74 ), PHK2_LACPL (Q88S87 ), PHK2_NOSS1 (Q8YTZ6 ), PHK2_RHIME (Q92ZA4 ), PHK_BEII9 (B2IGR2 ), PHK_BIFA0 (B8DUT6 ), PHK_BRADU (Q89S87 ), PHK_BRUA2 (Q2YK44 ), PHK_BRUME (Q8YBL8 ), PHK_BRUSU (Q8FWR0 ), PHK_CHLTE (Q8KCA0 ), PHK_CLOAB (Q97JE3 ), PHK_GLOVI (Q7NLX2 ), PHK_LACLA (Q9CFH4 ), PHK_LATSS (Q38YY6 ), PHK_METCA (Q608B0 ), PHK_MYCA1 (A0QGK3 ), PHK_MYCPA (Q73ZM8 ), PHK_NITEU (Q82T07 ), PHK_NITMU (Q2YAC5 ), PHK_NOCFA (Q5Z066 ), PHK_PARUW (Q6MFC0 ), PHK_PEDPA (Q03H73 ), PHK_PSEP1 (A5W384 ), PHK_RHILO (Q988V7 ), PHK_RHOBA (Q7UH14 ), PHK_RHOP2 (Q2ITA9 ), PHK_RHOPA (Q6N976 ), PHK_RHOPB (Q20ZU5 ), PHK_RHOPS (Q13B10 ), PHK_RHOPT (B3Q8J5 ), PHK_SCHPO (O74770 ), PHK_STRAW (Q82NM9 ), PHK_STRCO (Q8CK51 ), PHK_SYNE7 (Q31LF9 ), PHK_SYNP6 (Q5N0G7 ), PHK_SYNY3 (P74690 ), PHK_THEVB (Q8DJN6 ), PIGD_SERMA (Q5W251 ), PIGD_SERS3 (Q5W268 ), PPD_STRHY (Q54271 ), XFP_BIFAS (Q9AEM9 ), XPKA_LACPE (Q937F6 ), XSC_ALCXX (Q84H41 ), XSC_CASDE (Q84H44 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
5 sequences
ILVB_ARTPT (P27868 ), PDC1_TOBAC (P51845 ), PDC2_MAIZE (Q05326 ), PDC2_PEA (P51851 ), PDC3_MAIZE (Q05327 )» more |
UniProtKB/Swiss-Prot False positive sequences |
6 sequences
COLB_DICDI (Q8T2A1 ), DXS1_CERS4 (Q3J1A8 ), DXS1_ROSDO (Q16DV7 ), DXS_FUSNN (Q8R639 ), DXS_RHOCA (P26242 ), NPHN_MOUSE (Q9QZS7 )» more |
PDB [Detailed view] |
123 PDB
1BFD; 1JSC; 1MCZ; 1N0H; 1OVM; 1OZF; 1OZG; 1OZH; 1PI3; 1PO7; 1POW; 1POX; 1PVD; 1PYD; 1Q6Z; 1QPB; 1T9A; 1T9B; 1T9C; 1T9D; 1UPA; 1UPB; 1UPC; 1Y9D; 1YBH; 1YHY; 1YHZ; 1YI0; 1YI1; 1YNO; 1Z8N; 1ZPD; 2EZ4; 2EZ8; 2EZ9; 2EZT; 2EZU; 2FN3; 2FWN; 2IHT; 2IHU; 2IHV; 2V3W; 2VJY; 2VK1; 2VK4; 2VK8; 2W93; 2WVA; 2WVG; 2WVH; 3E9Y; 3EA4; 3EY9; 3EYA; 3F6B; 3F6E; 3FSJ; 3FZN; 3OE1; 4GG1; 4GM0; 4GM1; 4GM4; 4GP9; 4GPE; 4JD5; 4JU8; 4JU9; 4JUA; 4JUB; 4JUC; 4JUD; 4JUF; 4K9K; 4K9L; 4K9M; 4K9N; 4K9O; 4K9P; 4MPJ; 4MPP; 4MPR; 4MQ5; 4MZX; 4QEL; 4ZP1; 5D6R; 5DEI; 5DGD; 5DGT; 5DX6; 5FEM; 5IMS; 5K2O; 5K3S; 5K6Q; 5K6R; 5K6T; 5TMA; 5WDG; 5WJ1; 5WKC; 6BD3; 6BD9; 6EFG; 6EFH; 6HAF; 6LPI; 6M2Y; 6M2Z; 6U9D; 6U9H; 6VZ8; 7PT1; 7PT2; 7PT3; 7PT4; 7STQ; 7TZZ; 7U1D; 7U1U; 7U25 » more |