PROSITE entry PS00187
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PURL: https://purl.expasy.org/prosite/signature/PS00187
Direct ScanProsite submission
General information about the entry
| Entry name [info] | TPP_ENZYMES |
| Accession [info] | PS00187 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00166 |
Name and characterization of the entry
| Description [info] | Thiamine pyrophosphate enzymes signature. |
| Pattern [info] |
[LIVMF]-[GSA]-x(5)-P-x(4)-[LIVMFYW]-x-[LIVMF]-x-G-D-[GSA]-[GSAC]. |
Numerical results [info]
| Total number of hits | 116 in 116 different sequences |
| Number of true positive hits | 109 in 109 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 7 in 7 different sequences |
| Number of false negative sequences | 83 |
| Number of 'partial' sequences | 5 |
| Precision (true positives / (true positives + false positives)) | 93.97 % |
| Recall (true positives / (true positives + false negatives)) | 56.77 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
109 sequences
ARUI_PSEAE (Q9HUI8), CEAS_STRCL (Q9LCV9), CFOL_ASPCN (A0A2I2F2I5), DCIP_ENTCL (P23234), HACL1_DICDI (Q54DA9), HACL2_BOVIN (A6QQT9), HACL2_CAEEL (O61856), HACL2_DANRE (Q6NV04), HACL2_HUMAN (A1L0T0), HACL2_MOUSE (Q8BU33), HACL2_XENLA (Q6DDK5), HACL_ACTC0 (P0DUV9), HACL_ARATH (Q9LF46), HACL_ORYSJ (Q0JMH0), ILVB1_BRANA (P27818), ILVB1_MYCTO (P9WG40), ILVB1_MYCTU (P9WG41), ILVB1_TOBAC (P09342), ILVB2_BRANA (P14874), ILVB2_MYCTU (O06335), ILVB2_TOBAC (P09114), ILVB3_BRANA (P27819), ILVB_ARATH (P17597), ILVB_CORGL (P42463), ILVB_CRYNH (Q6SSJ3), ILVB_CRYNJ (Q5KPJ5), ILVB_CYACA (O19929), ILVB_ECOLI (P08142), ILVB_GUITH (O78518), ILVB_KLEPN (P27696), ILVB_LACLA (Q02137), ILVB_METAO (O08353), ILVB_METJA (Q57725), ILVB_MYCAV (Q59498), ILVB_MYCBO (P0A623), ILVB_MYCLE (O33112), ILVB_PARMW (Q7U5G1), ILVB_PORPU (P69683), ILVB_PORUM (P69684), ILVB_PYRYE (Q1XDF6), ILVB_RAOTE (Q04524), ILVB_SCHPO (P36620), ILVB_YEAST (P07342), ILVG_ECOLI (P0DP90), ILVG_MYCBO (P66947), ILVG_MYCTO (P9WG38), ILVG_MYCTU (P9WG39), ILVI_BUCAI (P57321), ILVI_BUCAP (O85293), ILVI_BUCBP (Q89AP7), ILVI_BUCSC (Q9RQ65), ILVI_ECOLI (P00893), ILVI_HAEIN (P45261), ILVI_SALTY (P40811), ILVX_BACSU (Q04789), IOLD1_BACCZ (Q63B73), IOLD2_BACCZ (Q4V1F5), IOLD_BACAA (C3PAZ3), IOLD_BACAC (C3LHY1), IOLD_BACAH (A0REB6), IOLD_BACAN (Q81QB5), IOLD_BACC0 (B7JPM3), IOLD_BACC3 (C1EVJ3), IOLD_BACHK (Q6HIK2), IOLD_BACLD (Q65D03), IOLD_BACSU (P42415), IOLD_BACVZ (A7ZAH8), IOLD_CLOBA (B2V4K0), IOLD_CLOBB (B2TJ86), IOLD_CLOP1 (Q0TUZ2), IOLD_CLOPE (Q8XP76), IOLD_GEOKA (Q5KYR0), IOLD_GEOTN (A4IPB6), IOLD_HALH5 (Q9KAG9), IOLD_LACCA (A5YBJ6), IOLD_SHOC1 (Q5WKY8), KDC_MYCA1 (A0QBE6), KDC_MYCBO (Q7U140), KDC_MYCBP (A1KGY5), KDC_MYCPA (Q742Q2), KDC_MYCTA (A5U0P1), KDC_MYCTO (P9WG36), KDC_MYCTU (P9WG37), KDC_MYCUA (A0PL16), MDLC_PSEAE (Q9HUR2), MDLC_PSEPU (P20906), PDC1_ARATH (O82647), PDC1_CANAL (P83779), PDC1_CANGA (Q6FJA3), PDC1_KLULA (Q12629), PDC1_KLUMA (P33149), PDC1_YEAST (P06169), PDC2_SCHPO (Q92345), PDC3_ARATH (Q9M039), PDC3_SCHPO (Q9P7P6), PDC4_ARATH (Q9M040), PDC5_YEAST (P16467), PDC6_YEAST (P26263), PDC_NEUCR (P33287), PDC_ZYMMO (P06672), POXB_ECOLI (P07003), POXB_LACPL (P37063), POXB_STRPN (Q54970), PXP1_YEAST (P39994), XSC_DESTI (Q93PS3), XSC_RHIME (Q92UW6), XSC_RHOCB (D5AKX8), XSC_ROSNI (A3SR25), YDAP_BACSU (P96591)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
83 sequences
COMDE_METAC (Q8TKU6), COME_METJA (P58416), COME_METTH (O27275), DCIP_AZOBR (P51852), HACL1_HUMAN (Q9UJ83), HACL1_MOUSE (Q9QXE0), HACL1_RAT (Q8CHM7), ILVB_BACSU (P37251), IOLD_CLOTE (Q898E8), IOLD_LISIN (Q92EQ4), IOLD_LISMF (Q723S8), IOLD_LISMO (Q8Y9Y1), KDC_MYCLE (Q9CBD6), KDC_MYCS2 (A0R480), OXC_ECO57 (P0AFI1), OXC_ECOLI (P0AFI0), OXC_OXAFO (P40149), PDC1_MAIZE (P28516), PDC1_ORYSI (A2Y5L9), PDC1_ORYSJ (Q0DHF6), PDC1_PEA(P51850), PDC1_SCHPO (Q09737), PDC2_ARATH (Q9FFT4), PDC2_ORYSI (A2XFI3), PDC2_ORYSJ (Q10MW3), PDC2_TOBAC (P51846), PDC3_ORYSI (A2YQ76), PDC3_ORYSJ (Q0D3D2), PDC4_SCHPO (O42873), PDC_ASPFU (Q4WXX9), PDC_ASPOR (Q2UKV4), PDC_ASPPA (P51844), PDC_ASPTN (Q0CNV1), PDC_EMENI (P87208), PDC_HANUV (P34734), PHK1_LACPL (Q88U67), PHK1_NOSS1 (Q8YWW1), PHK1_RHIME (Q92T74), PHK2_LACPL (Q88S87), PHK2_NOSS1 (Q8YTZ6), PHK2_RHIME (Q92ZA4), PHK_BEII9 (B2IGR2), PHK_BIFA0 (B8DUT6), PHK_BRADU (Q89S87), PHK_BRUA2 (Q2YK44), PHK_BRUME (Q8YBL8), PHK_BRUSU (Q8FWR0), PHK_CHLTE (Q8KCA0), PHK_CLOAB (Q97JE3), PHK_GLOVI (Q7NLX2), PHK_LACLA (Q9CFH4), PHK_LATSS (Q38YY6), PHK_METCA (Q608B0), PHK_MYCA1 (A0QGK3), PHK_MYCPA (Q73ZM8), PHK_NITEU (Q82T07), PHK_NITMU (Q2YAC5), PHK_NOCFA (Q5Z066), PHK_PARUW (Q6MFC0), PHK_PEDPA (Q03H73), PHK_PSEP1 (A5W384), PHK_RHILO (Q988V7), PHK_RHOBA (Q7UH14), PHK_RHOP2 (Q2ITA9), PHK_RHOPA (Q6N976), PHK_RHOPB (Q20ZU5), PHK_RHOPS (Q13B10), PHK_RHOPT (B3Q8J5), PHK_SCHPO (O74770), PHK_STRAW (Q82NM9), PHK_STRCO (Q8CK51), PHK_SYNE7 (Q31LF9), PHK_SYNP6 (Q5N0G7), PHK_SYNY3 (P74690), PHK_THEVB (Q8DJN6), PIGD_SERMA (Q5W251), PIGD_SERS3 (Q5W268), PPD_STRHY (Q54271), PPD_STRVT (O86938), XFP_BIFAS (Q9AEM9), XPKA_LACPE (Q937F6), XSC_ALCXX (Q84H41), XSC_CASDE (Q84H44)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
5 sequences
ILVB_ARTPT (P27868), PDC1_TOBAC (P51845), PDC2_MAIZE (Q05326), PDC2_PEA(P51851), PDC3_MAIZE (Q05327)» more |
| UniProtKB/Swiss-Prot False positive sequences |
7 sequences
COLB_DICDI (Q8T2A1), DXS1_CERS4 (Q3J1A8), DXS1_ROSDO (Q16DV7), DXS_FUSNN (Q8R639), DXS_RHOCA (P26242), ISOA2_ORYSJ (Q6AU80), NPHN_MOUSE (Q9QZS7)» more |
| PDB [Detailed view] |
131 PDB
pdb_00001bfd; pdb_00001jsc; pdb_00001mcz; pdb_00001n0h; pdb_00001ovm; pdb_00001ozf; pdb_00001ozg; pdb_00001ozh; pdb_00001pi3; pdb_00001po7; pdb_00001pow; pdb_00001pox; pdb_00001pvd; pdb_00001pyd; pdb_00001q6z; pdb_00001qpb; pdb_00001t9a; pdb_00001t9b; pdb_00001t9c; pdb_00001t9d; pdb_00001upa; pdb_00001upb; pdb_00001upc; pdb_00001y9d; pdb_00001ybh; pdb_00001yhy; pdb_00001yhz; pdb_00001yi0; pdb_00001yi1; pdb_00001yno; pdb_00001z8n; pdb_00001zpd; pdb_00002ez4; pdb_00002ez8; pdb_00002ez9; pdb_00002ezt; pdb_00002ezu; pdb_00002fn3; pdb_00002fwn; pdb_00002iht; pdb_00002ihu; pdb_00002ihv; pdb_00002v3w; pdb_00002vjy; pdb_00002vk1; pdb_00002vk4; pdb_00002vk8; pdb_00002w93; pdb_00002wva; pdb_00002wvg; pdb_00002wvh; pdb_00003e9y; pdb_00003ea4; pdb_00003ey9; pdb_00003eya; pdb_00003f6b; pdb_00003f6e; pdb_00003fsj; pdb_00003fzn; pdb_00003oe1; pdb_00004gg1; pdb_00004gm0; pdb_00004gm1; pdb_00004gm4; pdb_00004gp9; pdb_00004gpe; pdb_00004jd5; pdb_00004ju8; pdb_00004ju9; pdb_00004jua; pdb_00004jub; pdb_00004juc; pdb_00004jud; pdb_00004juf; pdb_00004k9k; pdb_00004k9l; pdb_00004k9m; pdb_00004k9n; pdb_00004k9o; pdb_00004k9p; pdb_00004mpj; pdb_00004mpp; pdb_00004mpr; pdb_00004mq5; pdb_00004mzx; pdb_00004qel; pdb_00004zp1; pdb_00005d6r; pdb_00005dei; pdb_00005dgd; pdb_00005dgt; pdb_00005dx6; pdb_00005fem; pdb_00005ims; pdb_00005k2o; pdb_00005k3s; pdb_00005k6q; pdb_00005k6r; pdb_00005k6t; pdb_00005tma; pdb_00005wdg; pdb_00005wj1; pdb_00005wkc; pdb_00006bd3; pdb_00006bd9; pdb_00006efg; pdb_00006efh; pdb_00006haf; pdb_00006lpi; pdb_00006m2y; pdb_00006m2z; pdb_00006u9d; pdb_00006u9h; pdb_00006vz8; pdb_00007pt1; pdb_00007pt2; pdb_00007pt3; pdb_00007pt4; pdb_00007stq; pdb_00007tzz; pdb_00007u1d; pdb_00007u1u; pdb_00007u25; pdb_00008et4; pdb_00008et5; pdb_00008xbo; pdb_00008xbq; pdb_00008xbr; pdb_00009c4p; pdb_00009c4q; pdb_00009c4r » more |