PROSITE entry PS00218

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General information about the entry

Entry name [info]	AMINO_ACID_PERMEASE_1
Accession [info]	PS00218
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-JUL-1999 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00191

Name and characterization of the entry

Description [info]	Amino acid permeases signature.
Pattern [info]	[STAGC]-G-[PAG]-x(2,3)-[LIVMFYWA](2)-x-[LIVMFYW]-x-[LIVMFWSTAGC](2)- [STAGC]-x(3)-[LIVMFYWT]-x-[LIVMST]-x(3)-[LIVMCTA]-[GA]-E-x(5)-[PSAL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	94 in 94 different sequences
Number of true positive hits	93 in 93 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	39
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	98.94 %
Recall (true positives / (true positives + false negatives))	70.45 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	93 sequences AAP1_SCHPO (Q92367), AAP2_NEUCR (O59942), AAPA_BACSU (O06005), AAPT1_MACPH (P0DTN6), AAT1_SCHPO (Q9P5N2), AGP1_SACU7 (Q876K6), AGP1_YEAS7 (A6ZTG5), AGP1_YEAST (P25376), AGP2_YEAST (P38090), AGP3_YEAST (P43548), ALP1_YEAST (P38971), ANSP1_MYCBO (Q7VEQ4), ANSP1_MYCTO (P9WQM8), ANSP1_MYCTU (P9WQM9), ANSP2_MYCBO (P0A4W1), ANSP2_MYCTO (P9WQM6), ANSP2_MYCTU (P9WQM7), ANSP_ECOLI (P77610), ANSP_SALTY (P40812), ANSP_STRCO (Q9X7P0), AROP_CORGL (Q46065), AROP_ECO57 (Q8X968), AROP_ECOL6 (Q8FL49), AROP_ECOLI (P15993), AROP_SALTI (P0A188), AROP_SALTS (E1W822), AROP_SALTY (P0CK99), AROP_SHIFL (P59737), BAP2_YEAST (P38084), BAP3_YEAST (P41815), BAUD_PSEAE (Q9I703), CAN1_CANAL (A0A1D8PPI5), CAN1_CANAW (P43059), CAN1_CANGA (Q6FNY1), CAN1_YEAST (P04817), CAN2_CANAL (Q59WU0), CAN3_CANAL (A0A1D8PPG4), CAT1_SCHPO (Q9URZ4), CYCA_ECO57 (P0AAE1), CYCA_ECOL6 (A0A0H2VDI7), CYCA_ECOLI (P0AAE0), DIP5_YEAST (P53388), GABP_BACSU (P46349), GABP_ECOLI (P25527), GAP1_CANAL (Q5AG77), GAP1_YEAST (P19145), GAP2_CANAL (A0A1D8PK89), GAP3_CANAL (A0A1D8PN88), GAP4_CANAL (Q59WB3), GAP5_CANAL (A0A1D8PMB1), GNP1_YEAST (P48813), HIP1_YEAST (P06775), HISP_LACLM (A2RI97), HNM1_YEAST (P19807), HUTM_BACSU (P42087), INDA1_HYPAT (P34054), ISP5_SCHPO (P40901), LYP1_YEAST (P32487), LYSP_ECOLI (P25737), MEU22_SCHPO (O60170), MMUP_ECOLI (Q47689), PHEP_ECOLI (P24207), PROY_ECO57 (P0AAE4), PROY_ECOL6 (P0AAE3), PROY_ECOLI (P0AAE2), PROY_SALTY (P37460), PUT4_SCHPO (Q9URZ3), PUT4_YEAST (P15380), PUTX_EMENI (P18696), ROCC_BACSU (P39636), ROCE_BACSU (P39137), SAM3_YEAST (Q08986), SERP2_LACLM (A2RI86), TAT1_YEAST (P38085), TAT2_YEAST (P38967), TPO5_YEAST (P36029), UGA4_YEAST (P32837), YAO8_SCHPO (Q10087), YBGF_BACSU (O31462), YBXG_BACSU (P54425), YCV4_SCHPO (O74543), YDGF_BACSU (P96704), YG64_SCHPO (O60113), YH81_SCHPO (Q9P5N4), YHE1_SCHPO (Q9HDV2), YI26_SCHPO (Q9P768), YIFK_ECOLI (P27837), YIFK_SALTI (P0A190), YIFK_SALTY (P0A189), YP51_SCHPO (B5BP45), YPEV_LACDL (P45495), YQD2_SCHPO (Q9C0V0), YTNA_BACSU (O34618) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	39 sequences ACAP_LACLM (A2RL65), AGUD_LACLA (Q9CEY5), FYWP_LACLM (A2RMP5), GPT1_CANAX (O74248), LYSP_LACLM (A2RNZ6), MMP1_YEAST (Q12372), PLAP_ECO57 (P0AA48), PLAP_ECOLI (P0AA47), PUUP_ECOLI (P76037), SERP1_LACLM (A2RI87), SSY1_YEAST (Q03770), STET_BACSU (O34739), THI9_SCHPO (Q9UT18), Y093_RHIME (O87394), Y1691_LEGPH (P37034), Y1979_MYCTO (P9WQM4), Y1979_MYCTU (P9WQM5), Y1999_MYCTO (P9WQM2), Y1999_MYCTU (P9WQM3), Y2001_MYCBO (Q7TZ67), Y2022_MYCBO (P63350), YBAT_ECOLI (P77400), YC9D_SCHPO (Q09887), YCGH_BACSU (P94383), YCQ4_SCHPO (O74537), YCT3_SCHPO (O59813), YCUB_SCHPO (O59831), YECA_BACSU (O34560), YFZ1_SCHPO (Q9US40), YKAA_CAEEL (P34261), YLAT1_HUMAN (Q9UM01), YLAT1_MOUSE (Q9Z1K8), YLAT1_RAT (Q9R0S5), YLAT2_DANRE (Q59I64), YLAT2_HUMAN (Q92536), YLAT2_MOUSE (Q8BGK6), YLAT2_XENLA (A1L3M3), YLAT2_XENTR (Q28I80), YVBW_BACSU (O32257) » more
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence PLAP_KLEPN (P37103)
UniProtKB/Swiss-Prot False positive sequences	1 sequence FAM3B_HUMAN (P58499)