PROSITE entry PS00245
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General information about the entry
Entry name [info] | PHYTOCHROME_1 |
Accession [info] | PS00245 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00218 |
Name and characterization of the entry
Description [info] | Phytochrome chromophore attachment site signature. |
Pattern [info] |
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y. |
Numerical results [info]
Total number of hits | 40 in 40 different sequences |
Number of true positive hits | 40 in 40 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 85.11 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | chromophore at position 6 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
40 sequences
PHY1_CERPU (P25848), PHY1_PHYPA (P36505), PHY1_SELMA (Q01549), PHY2_CERPU (Q39557), PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), PHYA2_SOYBN (B4YB07), PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), PHYA5_AVESA (P06595), PHYA_ARATH (P14712), PHYA_CUCPE (P06592), PHYA_LATSA (P93673), PHYA_ORYSI (A2XLG5), PHYA_ORYSJ (Q10DU0), PHYA_PEA(P15001), PHYA_PETCR (P55141), PHYA_POPTM (O49934), PHYA_SOLTU (P30733), PHYA_SORBI (P93526), PHYA_SOYBN (P42500), PHYB1_SOLLC (Q9ZS62), PHYB2_SOYBN (I1MGE5), PHYB_ARATH (P14713), PHYB_ORYSI (A2XFW2), PHYB_ORYSJ (Q10MG9), PHYB_SOLTU (P34094), PHYB_SORBI (P93527), PHYB_SOYBN (P42499), PHYB_TOBAC (P29130), PHYC_ARATH (P14714), PHYC_ORYSI (A2XM23), PHYC_ORYSJ (Q10CQ8), PHYD_ARATH (P42497), PHYE_ARATH (P42498), PHYE_IPONI (P55004), PHY_ADICA (P42496), PHY_MOUSC (P33529), PHY_PICAB (Q40762), PHY_PINSY (Q41046)» more
|
UniProtKB/Swiss-Prot False negative sequences |
7 sequences
BPHY_DEIRA (Q9RZA4), BPHY_PSEAE (Q9HWR3), PHY1_SYNY3 (Q55168), PHY2_SYNY3 (Q55434), PHYA_NOSS1 (Q9LCC2), PHYB_NOSS1 (Q9R6X3), PHYC_SORBI (P93528)» more |
PDB [Detailed view] |
7 PDB
4OUR; 6TBY; 6TC5; 6TC7; 6TL4; 7RZW; 8F5Z |