PROSITE entry PS00245
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS00245 |
| Entry name [info] | PHYTOCHROME_1 |
| Accession [info] | PS00245 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00218 |
Name and characterization of the entry
| Description [info] | Phytochrome chromophore attachment site signature. |
| Pattern [info] |
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y. |
Numerical results [info]
| Total number of hits | 40 in 40 different sequences |
| Number of true positive hits | 40 in 40 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 85.11 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | chromophore at position 6 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
40 sequences
PHY1_CERPU (P25848), PHY1_PHYPA (P36505), PHY1_SELMA (Q01549), PHY2_CERPU (Q39557), PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), PHYA2_SOYBN (B4YB07), PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), PHYA5_AVESA (P06595), PHYA_ARATH (P14712), PHYA_CUCPE (P06592), PHYA_LATSA (P93673), PHYA_ORYSI (A2XLG5), PHYA_ORYSJ (Q10DU0), PHYA_PEA(P15001), PHYA_PETCR (P55141), PHYA_POPTM (O49934), PHYA_SOLTU (P30733), PHYA_SORBI (P93526), PHYA_SOYBN (P42500), PHYB1_SOLLC (Q9ZS62), PHYB2_SOYBN (I1MGE5), PHYB_ARATH (P14713), PHYB_ORYSI (A2XFW2), PHYB_ORYSJ (Q10MG9), PHYB_SOLTU (P34094), PHYB_SORBI (P93527), PHYB_SOYBN (P42499), PHYB_TOBAC (P29130), PHYC_ARATH (P14714), PHYC_ORYSI (A2XM23), PHYC_ORYSJ (Q10CQ8), PHYD_ARATH (P42497), PHYE_ARATH (P42498), PHYE_IPONI (P55004), PHY_ADICA (P42496), PHY_MOUSC (P33529), PHY_PICAB (Q40762), PHY_PINSY (Q41046)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
BPHY_DEIRA (Q9RZA4), BPHY_PSEAE (Q9HWR3), PHY1_SYNY3 (Q55168), PHY2_SYNY3 (Q55434), PHYA_NOSS1 (Q9LCC2), PHYB_NOSS1 (Q9R6X3), PHYC_SORBI (P93528)» more |
| PDB [Detailed view] |
12 PDB
4OUR; 6TBY; 6TC5; 6TC7; 6TL4; 7RZW; 8F5Z; 8IFF; 8ISI; 8ISJ; 8YB4; 9IUZ |