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PROSITE entry PS00245


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General information about the entry

Entry name [info] PHYTOCHROME_1
Accession [info] PS00245
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00218

Name and characterization of the entry

Description [info] Phytochrome chromophore attachment site signature.
Pattern [info]
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 40 in 40 different sequences
Number of true positive hits 40 in 40 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.11 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] chromophore at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
40 sequences

PHY1_CERPU  (P25848), PHY1_PHYPA  (P36505), PHY1_SELMA  (Q01549), 
PHY2_CERPU  (Q39557), PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), 
PHYA2_SOYBN (B4YB07), PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), 
PHYA5_AVESA (P06595), PHYA_ARATH  (P14712), PHYA_CUCPE  (P06592), 
PHYA_LATSA  (P93673), PHYA_ORYSI  (A2XLG5), PHYA_ORYSJ  (Q10DU0), 
PHYA_PEA(P15001), PHYA_PETCR  (P55141), PHYA_POPTM  (O49934), 
PHYA_SOLTU  (P30733), PHYA_SORBI  (P93526), PHYA_SOYBN  (P42500), 
PHYB1_SOLLC (Q9ZS62), PHYB2_SOYBN (I1MGE5), PHYB_ARATH  (P14713), 
PHYB_ORYSI  (A2XFW2), PHYB_ORYSJ  (Q10MG9), PHYB_SOLTU  (P34094), 
PHYB_SORBI  (P93527), PHYB_SOYBN  (P42499), PHYB_TOBAC  (P29130), 
PHYC_ARATH  (P14714), PHYC_ORYSI  (A2XM23), PHYC_ORYSJ  (Q10CQ8), 
PHYD_ARATH  (P42497), PHYE_ARATH  (P42498), PHYE_IPONI  (P55004), 
PHY_ADICA   (P42496), PHY_MOUSC   (P33529), PHY_PICAB   (Q40762), 
PHY_PINSY   (Q41046)
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BPHY_DEIRA  (Q9RZA4), BPHY_PSEAE  (Q9HWR3), PHY1_SYNY3  (Q55168), 
PHY2_SYNY3  (Q55434), PHYA_NOSS1  (Q9LCC2), PHYB_NOSS1  (Q9R6X3), 
PHYC_SORBI  (P93528)
» more

PDB
[Detailed view]
10 PDB

4OUR; 6TBY; 6TC5; 6TC7; 6TL4; 7RZW; 8F5Z; 8IFF; 8ISI; 8ISJ