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Entry: PS00245

General information about the entry

Entry name [info] PHYTOCHROME_1
Accession [info] PS00245
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE;
10-FEB-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00218

Name and characterization of the entry

Description [info] Phytochrome chromophore attachment site signature.
Pattern [info]
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_01 which contains 564'277 sequence entries.


Total number of hits 40 in 40 different sequences
Number of true positive hits 40 in 40 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.11 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] chromophore at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
40 sequences

PHY1_CERPU  (P25848    ), PHY1_PHYPA  (P36505    ), PHY1_SELMA  (Q01549    ), 
PHY2_CERPU  (Q39557    ), PHYA1_MAIZE (P19862    ), PHYA1_TOBAC (P33530    ), 
PHYA2_SOYBN (B4YB07    ), PHYA3_AVESA (P06593    ), PHYA4_AVESA (P06594    ), 
PHYA5_AVESA (P06595    ), PHYA_ARATH  (P14712    ), PHYA_CUCPE  (P06592    ), 
PHYA_LATSA  (P93673    ), PHYA_ORYSI  (A2XLG5    ), PHYA_ORYSJ  (Q10DU0    ), 
PHYA_PEA    (P15001    ), PHYA_PETCR  (P55141    ), PHYA_POPTM  (O49934    ), 
PHYA_SOLTU  (P30733    ), PHYA_SORBI  (P93526    ), PHYA_SOYBN  (P42500    ), 
PHYB1_SOLLC (Q9ZS62    ), PHYB2_SOYBN (I1MGE5    ), PHYB_ARATH  (P14713    ), 
PHYB_ORYSI  (A2XFW2    ), PHYB_ORYSJ  (Q10MG9    ), PHYB_SOLTU  (P34094    ), 
PHYB_SORBI  (P93527    ), PHYB_SOYBN  (P42499    ), PHYB_TOBAC  (P29130    ), 
PHYC_ARATH  (P14714    ), PHYC_ORYSI  (A2XM23    ), PHYC_ORYSJ  (Q10CQ8    ), 
PHYD_ARATH  (P42497    ), PHYE_ARATH  (P42498    ), PHYE_IPONI  (P55004    ), 
PHY_ADICA   (P42496    ), PHY_MOUSC   (P33529    ), PHY_PICAB   (Q40762    ), 
PHY_PINSY   (Q41046    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BPHY_DEIRA  (Q9RZA4    ), BPHY_PSEAE  (Q9HWR3    ), PHY1_SYNY3  (Q55168    ), 
PHY2_SYNY3  (Q55434    ), PHYA_NOSS1  (Q9LCC2    ), PHYB_NOSS1  (Q9R6X3    ), 
PHYC_SORBI  (P93528    )
» more

PDB
[Detailed view]
5 PDB

4OUR; 6TBY; 6TC5; 6TC7; 6TL4

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