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PROSITE entry PS00276


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General information about the entry

Entry name [info] CHANNEL_COLICIN
Accession [info] PS00276
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00249

Name and characterization of the entry

Description [info] Channel forming colicins signature.
Pattern [info] 
T-x(2)-W-x-P-[LIVMFY](3)-x(2)-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 6 in 6 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 64.71 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 11 sequences 

CE05_ECOLX  (Q47500), CE10_ECOLX  (Q47125), CEA1_ECOLX  (P02978), 

CEA1_SHISO  (P21178), CEAB_ECOLX  (P05819), CEAK_ECOLX  (Q47502), 
CEAN_ECOLX  (P08083), CEA_CITFR   (P04480), CEA_ECOLX   (Q47108), 
CEIA_ECOLX  (P06716), CEIB_ECOLX  (P04479)
» more

UniProtKB/Swiss-Prot
False positive sequences		 6 sequences 

DSC1_SCHPO  (O43085), PK1L2_HUMAN (Q7Z442), PK1L2_MOUSE (Q7TN88), 

SRE31_CAEEL (O62266), SRE32_CAEEL (P90837), SSIT_STRMB  (P83544)
» more

PDB
[Detailed view]		 5 PDB

1A87; 1CII; 1COL; 1RH1; 2I88