Home  |  Contact
Entry: PS00276

General information about the entry

Entry name [info] CHANNEL_COLICIN
Accession [info] PS00276
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
02-JUN-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00249

Name and characterization of the entry

Description [info] Channel forming colicins signature.
Pattern [info] 
T-x(2)-W-x-P-[LIVMFY](3)-x(2)-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_03 which contains 565'254 sequence entries.


Total number of hits 16 in 16 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 68.75 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 11 sequences 

CE05_ECOLX  (Q47500    ), CE10_ECOLX  (Q47125    ), CEA1_ECOLX  (P02978    ), 

CEA1_SHISO  (P21178    ), CEAB_ECOLX  (P05819    ), CEAK_ECOLX  (Q47502    ), 
CEAN_ECOLX  (P08083    ), CEA_CITFR   (P04480    ), CEA_ECOLX   (Q47108    ), 
CEIA_ECOLX  (P06716    ), CEIB_ECOLX  (P04479    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 5 sequences 

DSC1_SCHPO  (O43085    ), PK1L2_HUMAN (Q7Z442    ), PK1L2_MOUSE (Q7TN88    ), 

SRE31_CAEEL (O62266    ), SRE32_CAEEL (P90837    )
» more

PDB
[Detailed view]		 5 PDB

1A87; 1CII; 1COL; 1RH1; 2I88

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission