PROSITE entry PS00293

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	PCNA_2
Accession [info]	PS00293
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-JUL-1998 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00265

Name and characterization of the entry

Description [info]	Proliferating cell nuclear antigen signature 2.
Pattern [info]	[RKA]-C-[DE]-[RH]-x(3)-[LIVMF]-x(3)-[LIVM]-x-[SGAN]-[LIVMF]-x-K- [LIVMF](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	36 in 36 different sequences
Number of true positive hits	36 in 36 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	63
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	36.36 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

36 sequences

PCNA1_ARATH (Q9M7Q7), PCNA1_DAUCA (Q00268), PCNA1_PBCV1 (Q84513),

PCNA1_PLAF7 (P61074), PCNA1_PLAFK (P31008), PCNA2_ARATH (Q9ZW35), 
PCNA2_DAUCA (Q00265), PCNA_ANGJA  (Q9W644), PCNA_BOMMO  (O01377), 
PCNA_BOVIN  (Q3ZBW4), PCNA_BRANA  (Q43124), PCNA_CATRO  (P24314), 
PCNA_CHATD  (G0SF70), PCNA_CHICK  (Q9DEA3), PCNA_COTJA  (Q9DDF1), 
PCNA_CRIGR  (P57761), PCNA_DANRE  (Q9PTP1), PCNA_DROME  (P17917), 
PCNA_HAPBU  (Q6B6N4), PCNA_HUMAN  (P12004), PCNA_MACFA  (P61258), 
PCNA_MAIZE  (Q43266), PCNA_MOUSE  (P17918), PCNA_NPVAC  (P11038), 
PCNA_NPVOP  (O10308), PCNA_ORYSJ  (P17070), PCNA_PEA(O82134), 
PCNA_POPNI  (Q9MAY3), PCNA_RAT(P04961), PCNA_SARCR  (O16852), 
PCNA_SCHPO  (Q03392), PCNA_SOYBN  (P22177), PCNA_STYCL  (P53358), 
PCNA_TOBAC  (O82797), PCNA_XENLA  (P18248), PCNA_YEAST  (P15873)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

63 sequences

PCNA1_AERPE (Q9YFT8), PCNA1_PYRAE (Q8ZTY0), PCNA1_SACS2 (P57766),

PCNA1_SULAC (Q4JAI6), PCNA1_SULOH (P57762), PCNA1_SULTO (Q975N2), 
PCNA1_THEKO (Q5JF32), PCNA2_AERPE (Q9Y9V7), PCNA2_PBCV1 (O41056), 
PCNA2_PYRAE (Q8ZYL6), PCNA2_SACS2 (Q97Z84), PCNA2_SULAC (Q4J9A8), 
PCNA2_SULOH (P57763), PCNA2_SULTO (Q975M2), PCNA2_THEKO (Q5JFD3), 
PCNA3_AERPE (Q9YEZ5), PCNA3_SACS2 (P57765), PCNA3_SULTO (Q973F5), 
PCNA_ARCFU  (O29912), PCNA_CAEEL  (O02115), PCNA_CENSY  (A0RXH7), 
PCNA_HALLT  (B9LU30), PCNA_HALMA  (Q9P9H8), PCNA_HALS3  (B0R7F7), 
PCNA_HALSA  (Q9HN45), PCNA_HALWD  (Q18E60), PCNA_META3  (A6UUW0), 
PCNA_METAC  (Q8TUF7), PCNA_METAR  (Q0W2J4), PCNA_METB6  (A7I849), 
PCNA_METBF  (Q46E39), PCNA_METBU  (Q12U18), PCNA_METHJ  (Q2FNX1), 
PCNA_METJA  (Q57697), PCNA_METKA  (Q8TWK3), PCNA_METLZ  (A2SSW6), 
PCNA_METM5  (A4G0K8), PCNA_METM6  (A9A8V2), PCNA_METM7  (A6VHX7), 
PCNA_METMA  (Q8PX25), PCNA_METMJ  (A3CVJ2), PCNA_METMP  (Q6LWJ8), 
PCNA_METPE  (B8GG80), PCNA_METS3  (A5UMB4), PCNA_METST  (Q2NE55), 
PCNA_METTH  (O27367), PCNA_METTP  (A0B7Y8), PCNA_METVS  (A6UQZ4), 
PCNA_MIMIV  (Q7T6Y0), PCNA_NANEQ  (Q74MV1), PCNA_NATPD  (Q3IU15), 
PCNA_NITMS  (A9A2X4), PCNA_PICTO  (Q6KZF1), PCNA_PYRAB  (Q9UYX8), 
PCNA_PYRFU  (O73947), PCNA_PYRHO  (O58398), PCNA_THEAC  (Q9HJQ0), 
PCNA_THEFM  (Q9UWR9), PCNA_THEGJ  (C5A5N6), PCNA_THEON  (B6YVZ1), 
PCNA_THEPD  (A1RXU8), PCNA_THESM  (C6A1Y5), PCNA_THEVO  (Q979S2)

» more

PDB
[Detailed view]

121 PDB

1AXC; 1PLQ; 1PLR; 1SXJ; 1U76; 1U7B; 1UL1; 1VYJ; 1VYM; 1W60; 2OD8; 2ZVK; 2ZVL; 2ZVM; 2ZVV; 2ZVW; 3F1W; 3GPM; 3GPN; 3JA9; 3L0W; 3L0X; 3L10; 3P87; 3PGE; 3TBL; 3V60; 3V61; 3V62; 3VKX; 3WGW; 4D2G; 4HK1; 4L60; 4L6P; 4RJF; 4YHR; 4ZTD; 5E0T; 5E0U; 5E0V; 5IY4; 5MAV; 5MLO; 5MLW; 5MOM; 5T9D; 5V7K; 5V7M; 5YCO; 5YD8; 5ZUT; 6CBI; 6CX2; 6CX3; 6CX4; 6D0Q; 6D0R; 6E49; 6EHT; 6FCM; 6FCN; 6GIS; 6GWS; 6HVO; 6K3A; 6O09; 6QC0; 6QCG; 6QH1; 6S1M; 6S1N; 6S1O; 6TNY; 6TNZ; 6VVO; 6W9W; 6WAC; 7EFA; 7KC0; 7KQ0; 7KQ1; 7M5L; 7M5M; 7M5N; 7NV0; 7NV1; 7O1E; 7O1F; 7QNZ; 7QO1; 7TFH; 7TFI; 7TFJ; 7THJ; 7THV; 7TI8; 7TIB; 7TIC; 7TID; 7TKU; 7U19; 7U1A; 7U1P; 8B8T; 8COB; 8DQX; 8DQZ; 8DR0; 8DR1; 8DR3; 8DR4; 8DR5; 8DR6; 8DR7; 8E84; 8F5Q; 8GL9; 8GLA; 8P9O; 8Q7I
» more