PROSITE entry PS00306

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General information about the entry

Entry name [info]	CASEIN_ALPHA_BETA
Accession [info]	PS00306
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-NOV-1990 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00277

Name and characterization of the entry

Description [info]	Caseins alpha/beta signature.
Pattern [info]	C-L-[LV]-A-x-A-[LVF]-A.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	40 in 40 different sequences
Number of true positive hits	32 in 32 different sequences
Number of 'unknown' hits	0
Number of false positive hits	8 in 8 different sequences
Number of false negative sequences	7
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	80.00 %
Recall (true positives / (true positives + false negatives))	82.05 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

32 sequences

CASA1_BOVIN (P02662), CASA1_BUBBU (O62823), CASA1_CAMDR (O97943),

CASA1_CAPHI (P18626), CASA1_CAVPO (P04656), CASA1_HUMAN (P47710), 
CASA1_MOUSE (P19228), CASA1_RABIT (P09115), CASA1_RAT   (P02661), 
CASA1_SHEEP (P04653), CASA2_BOVIN (P02663), CASA2_CAPHI (P33049), 
CASA2_CAVPO (P04655), CASA2_EQUAS (B7VGF9), CASA2_PIG   (P39036), 
CASA2_RABIT (P50419), CASA2_SHEEP (P04654), CASB_BOVIN  (P02666), 
CASB_BUBBU  (Q9TSI0), CASB_HORSE  (Q9GKK3), CASB_HUMAN  (P05814), 
CASB_MOUSE  (P10598), CASB_RABIT  (P09116), CASB_RAT(P02665), 
CASB_SHEEP  (P11839), CS2LA_RABIT (P50418), CS2LA_RAT   (P02667), 
CS2LB_MOUSE (P02664), CS2LB_RAT   (Q8CGR3), SERA_MACFA  (Q60HD7), 
SERA_PANTR  (A5A6P1), SERA_PONAB  (Q5R7M2)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

7 sequences

CASA1_NOTEU (P28549), CASA1_PIG   (P39035), CASA2_CAMDR (O97944),

CASB_CAMDR  (Q9TVD0), CASB_CAPHI  (P33048), CASB_NOTEU  (P28550), 
CASB_PIG(P39037)

» more

UniProtKB/Swiss-Prot
False positive sequences

8 sequences

FAAH1_PIG   (Q9TUI8), FLUC1_THEFY (Q47KG0), LCP2A_DROME (Q7JZV0),

MMLH_CUPPJ  (O51798), SERA_HUMAN  (O43175), SERPH_BOVIN (Q2KJH6), 
SERPH_MOUSE (P19324), SERPH_RAT   (P29457)

» more