PROSITE entry PS00344

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General information about the entry

Entry name [info]	GATA_ZN_FINGER_1
Accession [info]	PS00344
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00300

Name and characterization of the entry

Description [info]	GATA-type zinc finger domain.
Pattern [info]	C-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]- x(3,6)-C-[NES]-[ASNR]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	186 in 137 different sequences
Number of true positive hits	186 in 137 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	40
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	82.30 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	2
Site [info]	zinc at position 1
Site [info]	zinc at position 4
Site [info]	zinc at position 14
Site [info]	zinc at position 17
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

137 sequences

AMS2_SCHPO  (Q9URT4), AREA_ASPNG  (O13412), AREA_ASPOR  (O13415),

AREA_EMENI  (P17429), AREA_GIBFU  (P78688), AREA_PENCH  (Q01582), 
AREA_PENRO  (O13508), ASD4_NEUCR  (Q9HEV5), ASH1_YEAST  (P34233), 
CGA1_ORYSJ  (Q6YW48), CGPB_FUSVN  (Q00858), DAL80_YEAST (P26343), 
ECM23_YEAST (Q02710), ELT1_CAEEL  (P28515), ELT2_CAEEL  (Q10655), 
ELT3_CAEEL  (B7WN96), ELT4_CAEEL  (Q8MQA7), ELT6_CAEEL  (G5EGN3), 
ELT7_CAEEL  (O61924), FEP1_SCHPO  (Q10134), FIL1_SCHPO  (O94720), 
GAF1_SCHPO  (Q10280), GAT10_ARATH (Q8VZP4), GAT11_ARATH (Q6DBP8), 
GAT12_ARATH (P69781), GAT13_ARATH (Q9SKN6), GAT14_ARATH (Q9M1U2), 
GAT15_ARATH (Q8LG10), GAT15_ORYSI (B8AX51), GAT15_ORYSJ (Q6L5E5), 
GAT16_ARATH (Q9FJ10), GAT17_ARATH (Q9LIB5), GAT17_ORYSJ (Q6Z433), 
GAT18_ARATH (Q8LC79), GAT18_ORYSI (A2XKR7), GAT18_ORYSJ (Q10F25), 
GAT19_ARATH (Q6QPM2), GAT19_ORYSI (B8AR30), GAT19_ORYSJ (Q0DNU1), 
GAT1A_XENLA (P23767), GAT1B_XENLA (P23768), GAT1_CANAL  (Q5A432), 
GAT1_YEAST  (P43574), GAT20_ARATH (Q9ZPX0), GAT20_ORYSJ (Q5Z4U5), 
GAT21_ARATH (Q5HZ36), GAT22_ARATH (Q9SZI6), GAT23_ARATH (Q8LC59), 
GAT24_ARATH (Q8GXL7), GAT25_ARATH (Q9LRH6), GAT26_ARATH (Q8W4H1), 
GAT27_ARATH (Q5PP38), GAT28_ARATH (Q8H1G0), GAT2_YEAST  (P40209), 
GAT3_YEAST  (Q07928), GAT4_YEAST  (P40569), GAT5A_XENLA (P43695), 
GAT5B_XENLA (P43696), GAT6A_XENLA (Q91678), GAT6B_XENLA (P70005), 
GATA1_ARATH (Q8LAU9), GATA1_CHICK (P17678), GATA1_HUMAN (P15976), 
GATA1_MOUSE (P17679), GATA1_RAT   (P43429), GATA2_ARATH (O49741), 
GATA2_CHICK (P23824), GATA2_HUMAN (P23769), GATA2_MOUSE (O09100), 
GATA2_RAT   (Q924Y4), GATA2_XENLA (P23770), GATA3_ARATH (Q8L4M6), 
GATA3_BOVIN (Q08DV0), GATA3_CHICK (P23825), GATA3_DANRE (Q91428), 
GATA3_HUMAN (P23771), GATA3_MOUSE (P23772), GATA3_XENLA (P23773), 
GATA4_ARATH (O49743), GATA4_CANLF (Q0Q0E4), GATA4_CHICK (P43691), 
GATA4_HUMAN (P43694), GATA4_MOUSE (Q08369), GATA4_RAT   (P46152), 
GATA4_XENLA (Q91677), GATA5_ARATH (Q9FH57), GATA5_BOVIN (Q3SZJ5), 
GATA5_CHICK (P43692), GATA5_HUMAN (Q9BWX5), GATA5_MOUSE (P97489), 
GATA6_ARATH (Q9SD38), GATA6_CHICK (P43693), GATA6_HUMAN (Q92908), 
GATA6_MOUSE (Q61169), GATA6_PIG   (Q95JA5), GATA6_RAT   (P46153), 
GATA7_ARATH (O65515), GATA8_ARATH (Q9SV30), GATA9_ARATH (O82632), 
GATAB_BOMMO (P52167), GATAC_DROME (P91623), GLN3_YEAST  (P18494), 
GTAB_DICDI  (Q54V32), GTAE_DICDI  (Q55GK0), GTAF_DICDI  (Q55EQ0), 
GTAG_DICDI  (Q55C49), GTAH_DICDI  (Q75JZ0), GTAI_DICDI  (Q54TM6), 
GTAK_DICDI  (Q5KSV0), GTAL_DICDI  (Q54NM5), GTAM_DICDI  (Q54L83), 
GTAN_DICDI  (Q54KX0), GTAP_DICDI  (B0G188), GTAR_DICDI  (Q54WY0), 
GTAU_DICDI  (Q54US7), GZF3_CANAL  (Q5A201), GZF3_YEAST  (P42944), 
NIT2_NEUCR  (P19212), NRFA_PENUR  (Q92269), NUT1_MAGO7  (Q01168), 
P66A_HUMAN  (Q86YP4), PNR_DROME   (P52168), SFU1_CANAL  (Q5AP95), 
SREA_AJECA  (B4XXY3), SREA_ARTBC  (D4B3J8), SREA_ASPFU  (Q4WV91), 
SREA_COCH4  (N4XMB0), SREA_EMENI  (G5EB20), SREA_NEUCR  (Q1K8E7), 
SREP_PENCH  (Q92259), SRP_DROME   (P52172), TRPS1_HUMAN (Q9UHF7), 
TRPS1_MOUSE (Q925H1), TRPS1_XENLA (Q90ZS6), URB1_USTMA  (P40349), 
WC1_NEUCR   (Q01371), WC2_NEUCR   (P78714)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

40 sequences

ASH1_CANAL  (Q5A5Q6), BRG1_CANAL  (Q59LY1), EGL18_CAEEL (G5EGF4),

EGL27_CAEEL (Q09228), GAT29_ARATH (Q9LT45), GATA1_BOVIN (A2VDY6), 
GATD1_DANRE (Q1L8G7), GATD1_HUMAN (Q8WUU5), GATD1_MOUSE (Q920S3), 
GATD1_XENLA (Q7ZXY4), GTAA_DICDI  (Q550D5), GTAC_DICDI  (Q75JZ1), 
GTAD_DICDI  (Q54L72), GTAJ_DICDI  (Q54TE3), GTAO_DICDI  (Q54HA4), 
GTAQ_DICDI  (Q54L80), GTAT_DICDI  (Q54V37), GTAV_DICDI  (Q54UG8), 
GTAW_DICDI  (Q54L82), GTAX_DICDI  (Q54FV1), GTAY_DICDI  (Q54X31), 
MTA1_HUMAN  (Q13330), MTA1_MOUSE  (Q8K4B0), MTA1_RAT(Q62599), 
MTA2_HUMAN  (O94776), MTA2_MOUSE  (Q9R190), MTA3_BOVIN  (A6QL72), 
MTA3_HUMAN  (Q9BTC8), MTA3_MOUSE  (Q924K8), P66A_MOUSE  (Q8CHY6), 
P66B_HUMAN  (Q8WXI9), P66B_MOUSE  (Q8VHR5), RCORA_CAEEL (Q95Y41), 
RCORB_CAEEL (Q18919), RERE_HUMAN  (Q9P2R6), RERE_MOUSE  (Q80TZ9), 
RERE_RAT(Q62901), SRD1_YEAST  (P09007), ZGLP1_HUMAN (P0C6A0), 
ZGLP1_MOUSE (Q1WG82)

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PDB
[Detailed view]

25 PDB

1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2M9W; 2VUS; 2VUT; 2VUU; 3DFV; 3DFX; 3GAT; 3VD6; 3VEK; 4GAT; 4HC7; 4HC9; 4HCA; 5GAT; 5O9B; 6GAT; 6ZFV; 7GAT
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