PROSITE entry PS00344
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General information about the entry
Entry name [info] | GATA_ZN_FINGER_1 |
Accession [info] | PS00344 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00300 |
Name and characterization of the entry
Description [info] | GATA-type zinc finger domain. |
Pattern [info] |
C-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]- x(3,6)-C-[NES]-[ASNR]-C. |
Numerical results [info]
Total number of hits | 186 in 137 different sequences |
Number of true positive hits | 186 in 137 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 40 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 82.30 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 2 |
Site [info] | zinc at position 1 |
Site [info] | zinc at position 4 |
Site [info] | zinc at position 14 |
Site [info] | zinc at position 17 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
137 sequences
AMS2_SCHPO (Q9URT4), AREA_ASPNG (O13412), AREA_ASPOR (O13415), AREA_EMENI (P17429), AREA_GIBFU (P78688), AREA_PENCH (Q01582), AREA_PENRO (O13508), ASD4_NEUCR (Q9HEV5), ASH1_YEAST (P34233), CGA1_ORYSJ (Q6YW48), CGPB_FUSVN (Q00858), DAL80_YEAST (P26343), ECM23_YEAST (Q02710), ELT1_CAEEL (P28515), ELT2_CAEEL (Q10655), ELT3_CAEEL (B7WN96), ELT4_CAEEL (Q8MQA7), ELT6_CAEEL (G5EGN3), ELT7_CAEEL (O61924), FEP1_SCHPO (Q10134), FIL1_SCHPO (O94720), GAF1_SCHPO (Q10280), GAT10_ARATH (Q8VZP4), GAT11_ARATH (Q6DBP8), GAT12_ARATH (P69781), GAT13_ARATH (Q9SKN6), GAT14_ARATH (Q9M1U2), GAT15_ARATH (Q8LG10), GAT15_ORYSI (B8AX51), GAT15_ORYSJ (Q6L5E5), GAT16_ARATH (Q9FJ10), GAT17_ARATH (Q9LIB5), GAT17_ORYSJ (Q6Z433), GAT18_ARATH (Q8LC79), GAT18_ORYSI (A2XKR7), GAT18_ORYSJ (Q10F25), GAT19_ARATH (Q6QPM2), GAT19_ORYSI (B8AR30), GAT19_ORYSJ (Q0DNU1), GAT1A_XENLA (P23767), GAT1B_XENLA (P23768), GAT1_CANAL (Q5A432), GAT1_YEAST (P43574), GAT20_ARATH (Q9ZPX0), GAT20_ORYSJ (Q5Z4U5), GAT21_ARATH (Q5HZ36), GAT22_ARATH (Q9SZI6), GAT23_ARATH (Q8LC59), GAT24_ARATH (Q8GXL7), GAT25_ARATH (Q9LRH6), GAT26_ARATH (Q8W4H1), GAT27_ARATH (Q5PP38), GAT28_ARATH (Q8H1G0), GAT2_YEAST (P40209), GAT3_YEAST (Q07928), GAT4_YEAST (P40569), GAT5A_XENLA (P43695), GAT5B_XENLA (P43696), GAT6A_XENLA (Q91678), GAT6B_XENLA (P70005), GATA1_ARATH (Q8LAU9), GATA1_CHICK (P17678), GATA1_HUMAN (P15976), GATA1_MOUSE (P17679), GATA1_RAT (P43429), GATA2_ARATH (O49741), GATA2_CHICK (P23824), GATA2_HUMAN (P23769), GATA2_MOUSE (O09100), GATA2_RAT (Q924Y4), GATA2_XENLA (P23770), GATA3_ARATH (Q8L4M6), GATA3_BOVIN (Q08DV0), GATA3_CHICK (P23825), GATA3_DANRE (Q91428), GATA3_HUMAN (P23771), GATA3_MOUSE (P23772), GATA3_XENLA (P23773), GATA4_ARATH (O49743), GATA4_CANLF (Q0Q0E4), GATA4_CHICK (P43691), GATA4_HUMAN (P43694), GATA4_MOUSE (Q08369), GATA4_RAT (P46152), GATA4_XENLA (Q91677), GATA5_ARATH (Q9FH57), GATA5_BOVIN (Q3SZJ5), GATA5_CHICK (P43692), GATA5_HUMAN (Q9BWX5), GATA5_MOUSE (P97489), GATA6_ARATH (Q9SD38), GATA6_CHICK (P43693), GATA6_HUMAN (Q92908), GATA6_MOUSE (Q61169), GATA6_PIG (Q95JA5), GATA6_RAT (P46153), GATA7_ARATH (O65515), GATA8_ARATH (Q9SV30), GATA9_ARATH (O82632), GATAB_BOMMO (P52167), GATAC_DROME (P91623), GLN3_YEAST (P18494), GTAB_DICDI (Q54V32), GTAE_DICDI (Q55GK0), GTAF_DICDI (Q55EQ0), GTAG_DICDI (Q55C49), GTAH_DICDI (Q75JZ0), GTAI_DICDI (Q54TM6), GTAK_DICDI (Q5KSV0), GTAL_DICDI (Q54NM5), GTAM_DICDI (Q54L83), GTAN_DICDI (Q54KX0), GTAP_DICDI (B0G188), GTAR_DICDI (Q54WY0), GTAU_DICDI (Q54US7), GZF3_CANAL (Q5A201), GZF3_YEAST (P42944), NIT2_NEUCR (P19212), NRFA_PENUR (Q92269), NUT1_MAGO7 (Q01168), P66A_HUMAN (Q86YP4), PNR_DROME (P52168), SFU1_CANAL (Q5AP95), SREA_AJECA (B4XXY3), SREA_ARTBC (D4B3J8), SREA_ASPFU (Q4WV91), SREA_COCH4 (N4XMB0), SREA_EMENI (G5EB20), SREA_NEUCR (Q1K8E7), SREP_PENCH (Q92259), SRP_DROME (P52172), TRPS1_HUMAN (Q9UHF7), TRPS1_MOUSE (Q925H1), TRPS1_XENLA (Q90ZS6), URB1_USTMA (P40349), WC1_NEUCR (Q01371), WC2_NEUCR (P78714)» more
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UniProtKB/Swiss-Prot False negative sequences |
40 sequences
ASH1_CANAL (Q5A5Q6), BRG1_CANAL (Q59LY1), EGL18_CAEEL (G5EGF4), EGL27_CAEEL (Q09228), GAT29_ARATH (Q9LT45), GATA1_BOVIN (A2VDY6), GATD1_DANRE (Q1L8G7), GATD1_HUMAN (Q8WUU5), GATD1_MOUSE (Q920S3), GATD1_XENLA (Q7ZXY4), GTAA_DICDI (Q550D5), GTAC_DICDI (Q75JZ1), GTAD_DICDI (Q54L72), GTAJ_DICDI (Q54TE3), GTAO_DICDI (Q54HA4), GTAQ_DICDI (Q54L80), GTAT_DICDI (Q54V37), GTAV_DICDI (Q54UG8), GTAW_DICDI (Q54L82), GTAX_DICDI (Q54FV1), GTAY_DICDI (Q54X31), MTA1_HUMAN (Q13330), MTA1_MOUSE (Q8K4B0), MTA1_RAT(Q62599), MTA2_HUMAN (O94776), MTA2_MOUSE (Q9R190), MTA3_BOVIN (A6QL72), MTA3_HUMAN (Q9BTC8), MTA3_MOUSE (Q924K8), P66A_MOUSE (Q8CHY6), P66B_HUMAN (Q8WXI9), P66B_MOUSE (Q8VHR5), RCORA_CAEEL (Q95Y41), RCORB_CAEEL (Q18919), RERE_HUMAN (Q9P2R6), RERE_MOUSE (Q80TZ9), RERE_RAT(Q62901), SRD1_YEAST (P09007), ZGLP1_HUMAN (P0C6A0), ZGLP1_MOUSE (Q1WG82)» more |
PDB [Detailed view] |
25 PDB
1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2M9W; 2VUS; 2VUT; 2VUU; 3DFV; 3DFX; 3GAT; 3VD6; 3VEK; 4GAT; 4HC7; 4HC9; 4HCA; 5GAT; 5O9B; 6GAT; 6ZFV; 7GAT » more |