PROSITE entry PS00344
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General information about the entry
| Entry name [info] | GATA_ZN_FINGER_1 |
| Accession [info] | PS00344 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00300 |
Name and characterization of the entry
| Description [info] | GATA-type zinc finger domain. |
| Pattern [info] |
C-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]- x(3,6)-C-[NES]-[ASNR]-C. |
Numerical results [info]
| Total number of hits | 186 in 137 different sequences |
| Number of true positive hits | 186 in 137 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 40 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 82.30 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Site [info] | zinc at position 1 |
| Site [info] | zinc at position 4 |
| Site [info] | zinc at position 14 |
| Site [info] | zinc at position 17 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
137 sequences
AMS2_SCHPO (Q9URT4 ), AREA_ASPNG (O13412 ), AREA_ASPOR (O13415 ), AREA_EMENI (P17429 ), AREA_GIBFU (P78688 ), AREA_PENCH (Q01582 ), AREA_PENRO (O13508 ), ASD4_NEUCR (Q9HEV5 ), ASH1_YEAST (P34233 ), CGA1_ORYSJ (Q6YW48 ), CGPB_FUSVN (Q00858 ), DAL80_YEAST (P26343 ), ECM23_YEAST (Q02710 ), ELT1_CAEEL (P28515 ), ELT2_CAEEL (Q10655 ), ELT3_CAEEL (B7WN96 ), ELT4_CAEEL (Q8MQA7 ), ELT6_CAEEL (G5EGN3 ), ELT7_CAEEL (O61924 ), FEP1_SCHPO (Q10134 ), FIL1_SCHPO (O94720 ), GAF1_SCHPO (Q10280 ), GAT10_ARATH (Q8VZP4 ), GAT11_ARATH (Q6DBP8 ), GAT12_ARATH (P69781 ), GAT13_ARATH (Q9SKN6 ), GAT14_ARATH (Q9M1U2 ), GAT15_ARATH (Q8LG10 ), GAT15_ORYSI (B8AX51 ), GAT15_ORYSJ (Q6L5E5 ), GAT16_ARATH (Q9FJ10 ), GAT17_ARATH (Q9LIB5 ), GAT17_ORYSJ (Q6Z433 ), GAT18_ARATH (Q8LC79 ), GAT18_ORYSI (A2XKR7 ), GAT18_ORYSJ (Q10F25 ), GAT19_ARATH (Q6QPM2 ), GAT19_ORYSI (B8AR30 ), GAT19_ORYSJ (Q0DNU1 ), GAT1A_XENLA (P23767 ), GAT1B_XENLA (P23768 ), GAT1_CANAL (Q5A432 ), GAT1_YEAST (P43574 ), GAT20_ARATH (Q9ZPX0 ), GAT20_ORYSJ (Q5Z4U5 ), GAT21_ARATH (Q5HZ36 ), GAT22_ARATH (Q9SZI6 ), GAT23_ARATH (Q8LC59 ), GAT24_ARATH (Q8GXL7 ), GAT25_ARATH (Q9LRH6 ), GAT26_ARATH (Q8W4H1 ), GAT27_ARATH (Q5PP38 ), GAT28_ARATH (Q8H1G0 ), GAT2_YEAST (P40209 ), GAT3_YEAST (Q07928 ), GAT4_YEAST (P40569 ), GAT5A_XENLA (P43695 ), GAT5B_XENLA (P43696 ), GAT6A_XENLA (Q91678 ), GAT6B_XENLA (P70005 ), GATA1_ARATH (Q8LAU9 ), GATA1_CHICK (P17678 ), GATA1_HUMAN (P15976 ), GATA1_MOUSE (P17679 ), GATA1_RAT (P43429 ), GATA2_ARATH (O49741 ), GATA2_CHICK (P23824 ), GATA2_HUMAN (P23769 ), GATA2_MOUSE (O09100 ), GATA2_RAT (Q924Y4 ), GATA2_XENLA (P23770 ), GATA3_ARATH (Q8L4M6 ), GATA3_BOVIN (Q08DV0 ), GATA3_CHICK (P23825 ), GATA3_DANRE (Q91428 ), GATA3_HUMAN (P23771 ), GATA3_MOUSE (P23772 ), GATA3_XENLA (P23773 ), GATA4_ARATH (O49743 ), GATA4_CANLF (Q0Q0E4 ), GATA4_CHICK (P43691 ), GATA4_HUMAN (P43694 ), GATA4_MOUSE (Q08369 ), GATA4_RAT (P46152 ), GATA4_XENLA (Q91677 ), GATA5_ARATH (Q9FH57 ), GATA5_BOVIN (Q3SZJ5 ), GATA5_CHICK (P43692 ), GATA5_HUMAN (Q9BWX5 ), GATA5_MOUSE (P97489 ), GATA6_ARATH (Q9SD38 ), GATA6_CHICK (P43693 ), GATA6_HUMAN (Q92908 ), GATA6_MOUSE (Q61169 ), GATA6_PIG (Q95JA5 ), GATA6_RAT (P46153 ), GATA7_ARATH (O65515 ), GATA8_ARATH (Q9SV30 ), GATA9_ARATH (O82632 ), GATAB_BOMMO (P52167 ), GATAC_DROME (P91623 ), GLN3_YEAST (P18494 ), GTAB_DICDI (Q54V32 ), GTAE_DICDI (Q55GK0 ), GTAF_DICDI (Q55EQ0 ), GTAG_DICDI (Q55C49 ), GTAH_DICDI (Q75JZ0 ), GTAI_DICDI (Q54TM6 ), GTAK_DICDI (Q5KSV0 ), GTAL_DICDI (Q54NM5 ), GTAM_DICDI (Q54L83 ), GTAN_DICDI (Q54KX0 ), GTAP_DICDI (B0G188 ), GTAR_DICDI (Q54WY0 ), GTAU_DICDI (Q54US7 ), GZF3_CANAL (Q5A201 ), GZF3_YEAST (P42944 ), NIT2_NEUCR (P19212 ), NRFA_PENUR (Q92269 ), NUT1_MAGO7 (Q01168 ), P66A_HUMAN (Q86YP4 ), PNR_DROME (P52168 ), SFU1_CANAL (Q5AP95 ), SREA_AJECA (B4XXY3 ), SREA_ARTBC (D4B3J8 ), SREA_ASPFU (Q4WV91 ), SREA_COCH4 (N4XMB0 ), SREA_EMENI (G5EB20 ), SREA_NEUCR (Q1K8E7 ), SREP_PENCH (Q92259 ), SRP_DROME (P52172 ), TRPS1_HUMAN (Q9UHF7 ), TRPS1_MOUSE (Q925H1 ), TRPS1_XENLA (Q90ZS6 ), URB1_USTMA (P40349 ), WC1_NEUCR (Q01371 ), WC2_NEUCR (P78714 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
40 sequences
ASH1_CANAL (Q5A5Q6 ), BRG1_CANAL (Q59LY1 ), EGL18_CAEEL (G5EGF4 ), EGL27_CAEEL (Q09228 ), GAT29_ARATH (Q9LT45 ), GATA1_BOVIN (A2VDY6 ), GATD1_DANRE (Q1L8G7 ), GATD1_HUMAN (Q8WUU5 ), GATD1_MOUSE (Q920S3 ), GATD1_XENLA (Q7ZXY4 ), GTAA_DICDI (Q550D5 ), GTAC_DICDI (Q75JZ1 ), GTAD_DICDI (Q54L72 ), GTAJ_DICDI (Q54TE3 ), GTAO_DICDI (Q54HA4 ), GTAQ_DICDI (Q54L80 ), GTAT_DICDI (Q54V37 ), GTAV_DICDI (Q54UG8 ), GTAW_DICDI (Q54L82 ), GTAX_DICDI (Q54FV1 ), GTAY_DICDI (Q54X31 ), MTA1_HUMAN (Q13330 ), MTA1_MOUSE (Q8K4B0 ), MTA1_RAT (Q62599 ), MTA2_HUMAN (O94776 ), MTA2_MOUSE (Q9R190 ), MTA3_BOVIN (A6QL72 ), MTA3_HUMAN (Q9BTC8 ), MTA3_MOUSE (Q924K8 ), P66A_MOUSE (Q8CHY6 ), P66B_HUMAN (Q8WXI9 ), P66B_MOUSE (Q8VHR5 ), RCORA_CAEEL (Q95Y41 ), RCORB_CAEEL (Q18919 ), RERE_HUMAN (Q9P2R6 ), RERE_MOUSE (Q80TZ9 ), RERE_RAT (Q62901 ), SRD1_YEAST (P09007 ), ZGLP1_HUMAN (P0C6A0 ), ZGLP1_MOUSE (Q1WG82 )» more |
| PDB [Detailed view] |
25 PDB
1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2M9W; 2VUS; 2VUT; 2VUU; 3DFV; 3DFX; 3GAT; 3VD6; 3VEK; 4GAT; 4HC7; 4HC9; 4HCA; 5GAT; 5O9B; 6GAT; 6ZFV; 7GAT » more |