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Entry: PS00350 |
Entry name [info] | MADS_BOX_1 |
Accession [info] | PS00350 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00302 |
Description [info] | MADS-box domain signature. |
Pattern [info] |
[RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)- [LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]- [LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS]. |
Total number of hits | 167 in 167 different sequences |
Number of true positive hits | 167 in 167 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 37 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 81.86 % |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
167 sequences
1AP1_BRAOT (Q96355 ), 2AP1_BRAOT (Q96356 ), 3AP1_BRAOL (Q39371 ), AG104_ARATH (Q9LM46 ), AG11C_VITVI (F6I457 ), AG11S_VITVI (A0A217EJJ0), AGL11_ARATH (Q38836 ), AGL12_ARATH (Q38841 ), AGL13_ARATH (Q38837 ), AGL14_ARATH (Q38838 ), AGL15_ARATH (Q38847 ), AGL15_BRANA (Q39295 ), AGL16_ARATH (A2RVQ5 ), AGL17_ARATH (Q38840 ), AGL18_ARATH (Q9M2K8 ), AGL19_ARATH (O82743 ), AGL1_ARATH (P29381 ), AGL21_ARATH (Q9SZJ6 ), AGL24_ARATH (O82794 ), AGL31_ARATH (Q9FPN7 ), AGL3_ARATH (P29383 ), AGL42_ARATH (Q9FIS1 ), AGL5_ARATH (P29385 ), AGL66_ARATH (Q1PFC2 ), AGL6_ARATH (P29386 ), AGL8_ARATH (Q38876 ), AGL8_SINAL (Q41274 ), AGL8_SOLCO (O22328 ), AGL8_SOLLC (Q40170 ), AGL8_SOLTU (Q42429 ), AGL9_ARADE (Q38694 ), AGL9_PETHY (Q03489 ), AGL9_SINAL (O04067 ), AGL9_SOLLC (Q42464 ), AG_ARATH (P17839 ), AG_BRANA (Q01540 ), AG_PANGI (Q40872 ), AG_PETHY (Q40885 ), AG_SOLLC (Q40168 ), AG_TOBAC (Q43585 ), ANR1_ARATH (Q9SI38 ), AP1A_BRAOA (B4YPW6 ), AP1A_BRAOB (Q8GTF5 ), AP1C_BRAOA (B4YPV4 ), AP1C_BRAOB (Q8GTF4 ), AP1_ARALL (D7KWY6 ), AP1_ARATH (P35631 ), AP1_BRARP (P0DI14 ), AP1_CITSI (A2IB53 ), AP1_SINAL (Q41276 ), AP1_VITVI (Q6E6S7 ), AP3_ARATH (P35632 ), AP3_VITVI (E0CPH4 ), ARGR1_YEAST (P07249 ), CALA_BRAOB (Q6R4R9 ), CALB_BRAOB (Q6R4R8 ), CALC_BRAOB (Q6R4R7 ), CALD_BRAOB (Q6R4R6 ), CAL_ARALL (D7KQR8 ), CAL_ARATH (Q39081 ), CAL_BRAOT (Q39375 ), CAL_BRARC (Q6R4S6 ), CAL_BRARP (Q9SBK9 ), CAL_BRARR (Q6R4S3 ), CMB1_DIACA (Q39685 ), CMB2_DIACA (Q42498 ), DEF21_ANTMA (Q8RVL4 ), DEFA_ANTMA (P23706 ), EJ2_SOLLC (Q7Y040 ), FBP1_PETHY (Q03488 ), FBP24_PETHY (Q9ATE5 ), FLC_ARATH (Q9S7Q7 ), FULL_VITVI (D7SMN6 ), GGM13_GNEGN (Q9XGJ4 ), GLOB_ANTMA (Q03378 ), GLOB_TOBAC (Q03416 ), J2_SOLLC (K4DEK0 ), JOIN_SOLLC (Q9FUY6 ), M17_MAIZE (Q8VWM8 ), MAD13_ORYSJ (Q2QW53 ), MAD14_ORYSI (P0C5B1 ), MAD14_ORYSJ (Q10CQ1 ), MAD17_ORYSJ (Q7XUN2 ), MAD21_ORYSJ (Q8RU31 ), MAD22_ORYSJ (Q9XJ66 ), MAD23_ORYSJ (Q6VAM4 ), MAD25_ORYSJ (Q84NC5 ), MAD26_ORYSI (A2YQK9 ), MAD26_ORYSJ (Q0J8G8 ), MAD27_ORYSJ (Q6EP49 ), MAD29_ORYSJ (Q6H711 ), MAD31_ORYSJ (Q84NC2 ), MAD32_ORYSJ (Q8S151 ), MAD33_ORYSJ (Q2QW55 ), MAD34_ORYSJ (Q6Q9H6 ), MAD47_ORYSJ (Q5K4R0 ), MAD50_ORYSJ (Q9XJ60 ), MAD55_ORYSJ (Q69TG5 ), MAD56_ORYSI (A2Z9Q7 ), MAD56_ORYSJ (P0C5B2 ), MAD57_ORYSJ (Q6Z6W2 ), MAD58_ORYSJ (Q2V0P1 ), MADS1_ORYSI (A2XDY1 ), MADS1_ORYSJ (Q10PZ9 ), MADS1_PETHY (Q07472 ), MADS1_VITVI (Q93XH4 ), MADS2_ORYSJ (Q40702 ), MADS2_PETHY (Q07474 ), MADS2_VITVI (Q8LLR2 ), MADS3_ORYSJ (Q40704 ), MADS3_VITVI (Q8LLR1 ), MADS4_SOLLC (K4BND8 ), MADS4_VITVI (Q8LLR0 ), MADS5_ORYSI (A2Y9P0 ), MADS5_ORYSJ (Q0DEB8 ), MADS6_ORYSJ (Q6EU39 ), MADS7_ORYSI (P0C5B0 ), MADS7_ORYSJ (Q0J466 ), MADS8_ORYSJ (Q9SAR1 ), MADS9_VITVI (Q0HA25 ), MBX1_SCHPO (O42954 ), MCM1_YEAST (P11746 ), MEF2A_BOVIN (A2VDZ3 ), MEF2A_CHICK (Q9W6U8 ), MEF2A_HUMAN (Q02078 ), MEF2A_MOUSE (Q60929 ), MEF2A_PIG (A2ICN5 ), MEF2A_PONAB (Q5REW7 ), MEF2A_RAT (Q2MJT0 ), MEF2A_XENLA (Q03414 ), MEF2B_HUMAN (Q02080 ), MEF2B_MOUSE (O55087 ), MEF2C_BOVIN (Q2KIA0 ), MEF2C_HUMAN (Q06413 ), MEF2C_MOUSE (Q8CFN5 ), MEF2C_PIG (A4UTP7 ), MEF2C_PONAB (Q5R444 ), MEF2C_RAT (A0A096MJY4), MEF2D_HUMAN (Q14814 ), MEF2D_MOUSE (Q63943 ), MEF2D_RAT (O89038 ), MEF2D_XENLA (Q03413 ), MEF2_CAEEL (Q9U325 ), MEF2_DROME (P40791 ), PIST_ARATH (P48007 ), PMAP1_SCHPO (P78926 ), PVG4_SCHPO (Q9HGP0 ), RLM1_YEAST (Q12224 ), RLMA_ASPFC (B0XYE0 ), RLMA_ASPFU (Q4WX78 ), SEP1_ARATH (P29382 ), SEP2_ARATH (P29384 ), SEP3_ARATH (O22456 ), SMP1_YEAST (P38128 ), SOC1_ARATH (O64645 ), SRFA_DICDI (Q54TY7 ), SRFB_DICDI (Q54RY6 ), SRFC_DICDI (Q55F37 ), SRF_CAEEL (Q18955 ), SRF_CHICK (Q90718 ), SRF_DROME (Q24535 ), SRF_HUMAN (P11831 ), SRF_MOUSE (Q9JM73 ), SRF_XENLA (P23790 ), SVP_ARATH (Q9FVC1 ), TM6_VITVI (Q003J2 ), TT16_ARATH (Q8RYD9 )» more
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UniProtKB/Swiss-Prot False negative sequences |
37 sequences
AG103_ARATH (Q9LSB2 ), AGL23_ARATH (O80807 ), AGL27_ARATH (Q9AT76 ), AGL28_ARATH (Q9LMM8 ), AGL29_ARATH (O64703 ), AGL30_ARATH (Q1PFA4 ), AGL36_ARATH (Q7XJK6 ), AGL49_ARATH (Q9ZUI9 ), AGL53_ARATH (Q7X9N2 ), AGL61_ARATH (Q4PSU4 ), AGL62_ARATH (Q9FKK2 ), AGL63_ARATH (Q9SA07 ), AGL70_ARATH (Q9LSR7 ), AGL71_ARATH (Q9LT93 ), AGL72_ARATH (Q9FLH5 ), AGL75_ARATH (Q9FLL0 ), AGL80_ARATH (Q9FJK3 ), AGL82_ARATH (Q9FIM0 ), AGL86_ARATH (Q9C6V3 ), AGL90_ARATH (Q7XJK5 ), AGL92_ARATH (Q9C6V4 ), AGL93_ARATH (Q7X9H9 ), AGL97_ARATH (Q9C633 ), MAD15_ORYSJ (Q6Q9I2 ), MAD16_ORYSJ (Q944S9 ), MAD18_ORYSI (A2YNI2 ), MAD18_ORYSJ (Q0D4T4 ), MAD30_ORYSJ (Q655V4 ), MAD51_ORYSJ (Q9XJ61 ), MADS4_ORYSJ (Q40703 ), MAF5_ARATH (Q683D7 ), MIG1_MAGO7 (G4MWZ7 ), MIG1_MAGOR (A9YDN6 ), MTF1_PEA (O65874 ), PHE1_ARATH (O80805 ), PHE2_ARATH (Q7XJK8 ), SRFD_DICDI (Q54QY7 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
AP32_ASAEU (Q9LLA7 ) |
PDB [Detailed view] |
17 PDB
1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57; 5F28; 6BYY; 6BZ1; 6C9L; 6WC2; 6WC5 » more |