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Entry: PS00350

General information about the entry

Entry name [info] MADS_BOX_1
Accession [info] PS00350
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE;
22-FEB-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00302

Name and characterization of the entry

Description [info] MADS-box domain signature.
Pattern [info] 
[RGS]-x-[RKS]-x(5)-[IL]-x-[DNGSK]-x(3)-[KR]-x(2)-T-[FY]-x-[RK](3)-x(2)-
[LIVM]-x-[KE]-K-[AT]-x-[EQ]-[LIVM]-[STA]-x-L-x(4)-[LIVM]-x-[LIVM]-
[LIVMT]-[LIVM]-x(6)-[LIVMFC]-x(2)-[FYLS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_01 which contains 569'213 sequence entries.


Total number of hits 167 in 167 different sequences
Number of true positive hits 167 in 167 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 37
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 81.86 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 167 sequences 

1AP1_BRAOT  (Q96355    ), 2AP1_BRAOT  (Q96356    ), 3AP1_BRAOL  (Q39371    ), 

AG104_ARATH (Q9LM46    ), AG11C_VITVI (F6I457    ), AG11S_VITVI (A0A217EJJ0), 
AGL11_ARATH (Q38836    ), AGL12_ARATH (Q38841    ), AGL13_ARATH (Q38837    ), 
AGL14_ARATH (Q38838    ), AGL15_ARATH (Q38847    ), AGL15_BRANA (Q39295    ), 
AGL16_ARATH (A2RVQ5    ), AGL17_ARATH (Q38840    ), AGL18_ARATH (Q9M2K8    ), 
AGL19_ARATH (O82743    ), AGL1_ARATH  (P29381    ), AGL21_ARATH (Q9SZJ6    ), 
AGL24_ARATH (O82794    ), AGL31_ARATH (Q9FPN7    ), AGL3_ARATH  (P29383    ), 
AGL42_ARATH (Q9FIS1    ), AGL5_ARATH  (P29385    ), AGL66_ARATH (Q1PFC2    ), 
AGL6_ARATH  (P29386    ), AGL8_ARATH  (Q38876    ), AGL8_SINAL  (Q41274    ), 
AGL8_SOLCO  (O22328    ), AGL8_SOLLC  (Q40170    ), AGL8_SOLTU  (Q42429    ), 
AGL9_ARADE  (Q38694    ), AGL9_PETHY  (Q03489    ), AGL9_SINAL  (O04067    ), 
AGL9_SOLLC  (Q42464    ), AG_ARATH    (P17839    ), AG_BRANA    (Q01540    ), 
AG_PANGI    (Q40872    ), AG_PETHY    (Q40885    ), AG_SOLLC    (Q40168    ), 
AG_TOBAC    (Q43585    ), ANR1_ARATH  (Q9SI38    ), AP1A_BRAOA  (B4YPW6    ), 
AP1A_BRAOB  (Q8GTF5    ), AP1C_BRAOA  (B4YPV4    ), AP1C_BRAOB  (Q8GTF4    ), 
AP1_ARALL   (D7KWY6    ), AP1_ARATH   (P35631    ), AP1_BRARP   (P0DI14    ), 
AP1_CITSI   (A2IB53    ), AP1_SINAL   (Q41276    ), AP1_VITVI   (Q6E6S7    ), 
AP3_ARATH   (P35632    ), AP3_VITVI   (E0CPH4    ), ARGR1_YEAST (P07249    ), 
CALA_BRAOB  (Q6R4R9    ), CALB_BRAOB  (Q6R4R8    ), CALC_BRAOB  (Q6R4R7    ), 
CALD_BRAOB  (Q6R4R6    ), CAL_ARALL   (D7KQR8    ), CAL_ARATH   (Q39081    ), 
CAL_BRAOT   (Q39375    ), CAL_BRARC   (Q6R4S6    ), CAL_BRARP   (Q9SBK9    ), 
CAL_BRARR   (Q6R4S3    ), CMB1_DIACA  (Q39685    ), CMB2_DIACA  (Q42498    ), 
DEF21_ANTMA (Q8RVL4    ), DEFA_ANTMA  (P23706    ), EJ2_SOLLC   (Q7Y040    ), 
FBP1_PETHY  (Q03488    ), FBP24_PETHY (Q9ATE5    ), FLC_ARATH   (Q9S7Q7    ), 
FULL_VITVI  (D7SMN6    ), GGM13_GNEGN (Q9XGJ4    ), GLOB_ANTMA  (Q03378    ), 
GLOB_TOBAC  (Q03416    ), J2_SOLLC    (K4DEK0    ), JOIN_SOLLC  (Q9FUY6    ), 
M17_MAIZE   (Q8VWM8    ), MAD13_ORYSJ (Q2QW53    ), MAD14_ORYSI (P0C5B1    ), 
MAD14_ORYSJ (Q10CQ1    ), MAD17_ORYSJ (Q7XUN2    ), MAD21_ORYSJ (Q8RU31    ), 
MAD22_ORYSJ (Q9XJ66    ), MAD23_ORYSJ (Q6VAM4    ), MAD25_ORYSJ (Q84NC5    ), 
MAD26_ORYSI (A2YQK9    ), MAD26_ORYSJ (Q0J8G8    ), MAD27_ORYSJ (Q6EP49    ), 
MAD29_ORYSJ (Q6H711    ), MAD31_ORYSJ (Q84NC2    ), MAD32_ORYSJ (Q8S151    ), 
MAD33_ORYSJ (Q2QW55    ), MAD34_ORYSJ (Q6Q9H6    ), MAD47_ORYSJ (Q5K4R0    ), 
MAD50_ORYSJ (Q9XJ60    ), MAD55_ORYSJ (Q69TG5    ), MAD56_ORYSI (A2Z9Q7    ), 
MAD56_ORYSJ (P0C5B2    ), MAD57_ORYSJ (Q6Z6W2    ), MAD58_ORYSJ (Q2V0P1    ), 
MADS1_ORYSI (A2XDY1    ), MADS1_ORYSJ (Q10PZ9    ), MADS1_PETHY (Q07472    ), 
MADS1_VITVI (Q93XH4    ), MADS2_ORYSJ (Q40702    ), MADS2_PETHY (Q07474    ), 
MADS2_VITVI (Q8LLR2    ), MADS3_ORYSJ (Q40704    ), MADS3_VITVI (Q8LLR1    ), 
MADS4_SOLLC (K4BND8    ), MADS4_VITVI (Q8LLR0    ), MADS5_ORYSI (A2Y9P0    ), 
MADS5_ORYSJ (Q0DEB8    ), MADS6_ORYSJ (Q6EU39    ), MADS7_ORYSI (P0C5B0    ), 
MADS7_ORYSJ (Q0J466    ), MADS8_ORYSJ (Q9SAR1    ), MADS9_VITVI (Q0HA25    ), 
MBX1_SCHPO  (O42954    ), MCM1_YEAST  (P11746    ), MEF2A_BOVIN (A2VDZ3    ), 
MEF2A_CHICK (Q9W6U8    ), MEF2A_HUMAN (Q02078    ), MEF2A_MOUSE (Q60929    ), 
MEF2A_PIG   (A2ICN5    ), MEF2A_PONAB (Q5REW7    ), MEF2A_RAT   (Q2MJT0    ), 
MEF2A_XENLA (Q03414    ), MEF2B_HUMAN (Q02080    ), MEF2B_MOUSE (O55087    ), 
MEF2C_BOVIN (Q2KIA0    ), MEF2C_HUMAN (Q06413    ), MEF2C_MOUSE (Q8CFN5    ), 
MEF2C_PIG   (A4UTP7    ), MEF2C_PONAB (Q5R444    ), MEF2C_RAT   (A0A096MJY4), 
MEF2D_HUMAN (Q14814    ), MEF2D_MOUSE (Q63943    ), MEF2D_RAT   (O89038    ), 
MEF2D_XENLA (Q03413    ), MEF2_CAEEL  (Q9U325    ), MEF2_DROME  (P40791    ), 
PIST_ARATH  (P48007    ), PMAP1_SCHPO (P78926    ), PVG4_SCHPO  (Q9HGP0    ), 
RLM1_YEAST  (Q12224    ), RLMA_ASPFC  (B0XYE0    ), RLMA_ASPFU  (Q4WX78    ), 
SEP1_ARATH  (P29382    ), SEP2_ARATH  (P29384    ), SEP3_ARATH  (O22456    ), 
SMP1_YEAST  (P38128    ), SOC1_ARATH  (O64645    ), SRFA_DICDI  (Q54TY7    ), 
SRFB_DICDI  (Q54RY6    ), SRFC_DICDI  (Q55F37    ), SRF_CAEEL   (Q18955    ), 
SRF_CHICK   (Q90718    ), SRF_DROME   (Q24535    ), SRF_HUMAN   (P11831    ), 
SRF_MOUSE   (Q9JM73    ), SRF_XENLA   (P23790    ), SVP_ARATH   (Q9FVC1    ), 
TM6_VITVI   (Q003J2    ), TT16_ARATH  (Q8RYD9    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 37 sequences 

AG103_ARATH (Q9LSB2    ), AGL23_ARATH (O80807    ), AGL27_ARATH (Q9AT76    ), 

AGL28_ARATH (Q9LMM8    ), AGL29_ARATH (O64703    ), AGL30_ARATH (Q1PFA4    ), 
AGL36_ARATH (Q7XJK6    ), AGL49_ARATH (Q9ZUI9    ), AGL53_ARATH (Q7X9N2    ), 
AGL61_ARATH (Q4PSU4    ), AGL62_ARATH (Q9FKK2    ), AGL63_ARATH (Q9SA07    ), 
AGL70_ARATH (Q9LSR7    ), AGL71_ARATH (Q9LT93    ), AGL72_ARATH (Q9FLH5    ), 
AGL75_ARATH (Q9FLL0    ), AGL80_ARATH (Q9FJK3    ), AGL82_ARATH (Q9FIM0    ), 
AGL86_ARATH (Q9C6V3    ), AGL90_ARATH (Q7XJK5    ), AGL92_ARATH (Q9C6V4    ), 
AGL93_ARATH (Q7X9H9    ), AGL97_ARATH (Q9C633    ), MAD15_ORYSJ (Q6Q9I2    ), 
MAD16_ORYSJ (Q944S9    ), MAD18_ORYSI (A2YNI2    ), MAD18_ORYSJ (Q0D4T4    ), 
MAD30_ORYSJ (Q655V4    ), MAD51_ORYSJ (Q9XJ61    ), MADS4_ORYSJ (Q40703    ), 
MAF5_ARATH  (Q683D7    ), MIG1_MAGO7  (G4MWZ7    ), MIG1_MAGOR  (A9YDN6    ), 
MTF1_PEA    (O65874    ), PHE1_ARATH  (O80805    ), PHE2_ARATH  (Q7XJK8    ), 
SRFD_DICDI  (Q54QY7    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

AP32_ASAEU  (Q9LLA7    )


				
	

	

		PDB
[Detailed view]		
		
			17 PDB
			


			1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57; 5F28; 
			
				6BYY; 6BZ1; 6C9L; 6WC2; 6WC5
			
			

			» more

				
	





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