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Entry: PS00351

General information about the entry

Entry name [info] TFIID
Accession [info] PS00351
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00303

Name and characterization of the entry

Description [info] Transcription factor TFIID repeat signature.
Pattern [info] 
Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x-
[STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 168 in 97 different sequences
Number of true positive hits 168 in 97 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 97 sequences 

TBP1_ARATH  (P28147    ), TBP1_ENTHI  (P52653    ), TBP1_HALVD  (D4GZA2    ), 

TBP1_MAIZE  (P50158    ), TBP1_METAC  (Q8TI26    ), TBP1_METMA  (Q8PY37    ), 
TBP1_WHEAT  (P26356    ), TBP2_ARATH  (P28148    ), TBP2_ENTHI  (C4M7H7    ), 
TBP2_HALVD  (D4H071    ), TBP2_MAIZE  (P50159    ), TBP2_METAC  (Q8TU94    ), 
TBP2_METMA  (Q8PY36    ), TBP2_ORYSJ  (Q8W0W4    ), TBP2_WHEAT  (Q02879    ), 
TBP3_METAC  (Q8TTZ7    ), TBP3_METMA  (Q8PUZ4    ), TBPB_HALSA  (Q48325    ), 
TBPE_HALSA  (Q9HN56    ), TBPF_HALSA  (Q9HHE9    ), TBPL1_ENTHI (A7UFC2    ), 
TBPL2_DANRE (Q1JPY4    ), TBPL2_HUMAN (Q6SJ96    ), TBPL2_MOUSE (Q6SJ95    ), 
TBPL2_PANTR (A6H907    ), TBPL2_RAT   (A6H909    ), TBPL2_TAKRU (Q6SJ94    ), 
TBPL2_XENLA (Q5UE94    ), TBPL2_XENTR (Q28DH2    ), TBP_ACACA   (P26354    ), 
TBP_ACEPE   (P46272    ), TBP_AERPE   (Q9YAT1    ), TBP_ARCFU   (O29874    ), 
TBP_ARTSF   (O17488    ), TBP_BOMMO   (O45211    ), TBP_BOVIN   (Q2HJ52    ), 
TBP_CAEEL   (P32085    ), TBP_CANAL   (O43133    ), TBP_CHICK   (O13270    ), 
TBP_DANRE   (Q7SXL3    ), TBP_DICDI   (P26355    ), TBP_DROME   (P20227    ), 
TBP_DROVI   (Q9NHP5    ), TBP_EMENI   (Q12731    ), TBP_HALMA   (Q5V470    ), 
TBP_HUMAN   (P20226    ), TBP_MACFA   (Q4R4F5    ), TBP_MESAU   (P53360    ), 
TBP_MESCR   (P48511    ), TBP_META3   (A6UTF6    ), TBP_METJA   (Q57930    ), 
TBP_METKA   (Q8TX38    ), TBP_METM6   (A9A840    ), TBP_METM7   (A6VIP7    ), 
TBP_METMP   (Q6M0L3    ), TBP_METS3   (A5UL47    ), TBP_METST   (Q2NFC3    ), 
TBP_METTH   (O27664    ), TBP_METTL   (Q9P9I9    ), TBP_METTP   (A0B5H8    ), 
TBP_METVS   (A6URP5    ), TBP_MOUSE   (P29037    ), TBP_NATPD   (Q3ITB1    ), 
TBP_PICTO   (Q6L1R1    ), TBP_PLAFA   (P32086    ), TBP_PROFL   (Q92117    ), 
TBP_PYRAB   (Q9V024    ), TBP_PYRAE   (Q8ZVR0    ), TBP_PYRCJ   (A3MV36    ), 
TBP_PYRFU   (P62000    ), TBP_PYRHO   (O58737    ), TBP_PYRIL   (A1RSQ1    ), 
TBP_PYRNV   (B1Y949    ), TBP_PYROC   (P58177    ), TBP_PYRWO   (P62001    ), 
TBP_SACS2   (P58178    ), TBP_SACSH   (Q55031    ), TBP_SCHPO   (P17871    ), 
TBP_SOLTU   (P26357    ), TBP_SOYBN   (Q42808    ), TBP_SPOFR   (P53361    ), 
TBP_STRPU   (P91809    ), TBP_SULAC   (Q9UWN7    ), TBP_SULTO   (Q971V3    ), 
TBP_TETTH   (Q27850    ), TBP_THEAC   (Q9HLM8    ), TBP_THECE   (Q56253    ), 
TBP_THEKO   (Q52366    ), TBP_THEON   (B6YXI6    ), TBP_THESM   (C6A0R1    ), 
TBP_THEVO   (Q978J5    ), TBP_TOBAC   (P93348    ), TBP_TRIGA   (Q92146    ), 
TBP_XENLA   (P27633    ), TBP_XENTR   (Q28GG8    ), TBP_YEAST   (P13393    ), 
TRF_DROME   (Q27896    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

TBPL1_BOVIN (Q32LB1    ), TBPL1_DANRE (Q5U385    ), TBPL1_HUMAN (P62380    ), 

TBPL1_MACFA (Q4R848    ), TBPL1_MOUSE (P62340    ), TBPL1_PONAB (Q5R7U8    ), 
TBPL1_XENTR (Q6DIY4    )
» more

PDB
[Detailed view]		 73 PDB

1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; 1QN5; 1QN6; 1QN7; 1QN8; 1QN9; 1QNA; 1QNB; 1QNC; 1QNE; 1RM1; 1TBA; 1TBP; 1TGH; 1VOK; 1VOL; 1VTL; 1VTO; 1YTB; 1YTF; 2Z8U; 4B0A; 4ROC; 4ROD; 4ROE; 4V1N; 4V1O; 5FMF; 5FUR; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5N9G; 5OQJ; 5OQM; 5SVA; 6CNB; 6CNC; 6CND; 6CNF; 6E16; 6E24; 6EU0; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6MZD; 6MZL; 6MZM; 6NJQ; 6O9L
» more

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