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PROSITE entry PS00351


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PURL: https://purl.expasy.org/prosite/signature/PS00351

Direct ScanProsite submission
General information about the entry

Entry name [info] TFIID
Accession [info] PS00351
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00303

Name and characterization of the entry

Description [info] Transcription factor TFIID repeat signature.
Pattern [info] 
Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x-
[STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 168 in 97 different sequences
Number of true positive hits 168 in 97 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 97 sequences 

TBP1_ARATH  (P28147), TBP1_ENTH1  (P52653), TBP1_HALVD  (D4GZA2), 

TBP1_MAIZE  (P50158), TBP1_METAC  (Q8TI26), TBP1_METMA  (Q8PY37), 
TBP1_WHEAT  (P26356), TBP2_ARATH  (P28148), TBP2_ENTH1  (C4M7H7), 
TBP2_HALVD  (D4H071), TBP2_MAIZE  (P50159), TBP2_METAC  (Q8TU94), 
TBP2_METMA  (Q8PY36), TBP2_ORYSJ  (Q8W0W4), TBP2_WHEAT  (Q02879), 
TBP3_METAC  (Q8TTZ7), TBP3_METMA  (Q8PUZ4), TBPB_HALSA  (Q48325), 
TBPE_HALSA  (Q9HN56), TBPF_HALSA  (Q9HHE9), TBPL1_ENTH1 (A7UFC2), 
TBPL2_DANRE (Q1JPY4), TBPL2_HUMAN (Q6SJ96), TBPL2_MOUSE (Q6SJ95), 
TBPL2_PANTR (A6H907), TBPL2_RAT   (A6H909), TBPL2_TAKRU (Q6SJ94), 
TBPL2_XENLA (Q5UE94), TBPL2_XENTR (Q28DH2), TBP_ACACA   (P26354), 
TBP_ACEPE   (P46272), TBP_AERPE   (Q9YAT1), TBP_ARCFU   (O29874), 
TBP_ARTSF   (O17488), TBP_BOMMO   (O45211), TBP_BOVIN   (Q2HJ52), 
TBP_CAEEL   (P32085), TBP_CANAL   (O43133), TBP_CHICK   (O13270), 
TBP_CRAGM   (Q92146), TBP_DANRE   (Q7SXL3), TBP_DICDI   (P26355), 
TBP_DROME   (P20227), TBP_DROVI   (Q9NHP5), TBP_EMENI   (Q12731), 
TBP_HALMA   (Q5V470), TBP_HUMAN   (P20226), TBP_MACFA   (Q4R4F5), 
TBP_MESAU   (P53360), TBP_MESCR   (P48511), TBP_META3   (A6UTF6), 
TBP_METJA   (Q57930), TBP_METKA   (Q8TX38), TBP_METM6   (A9A840), 
TBP_METM7   (A6VIP7), TBP_METMP   (Q6M0L3), TBP_METS3   (A5UL47), 
TBP_METST   (Q2NFC3), TBP_METTH   (O27664), TBP_METTL   (Q9P9I9), 
TBP_METTP   (A0B5H8), TBP_METVS   (A6URP5), TBP_MOUSE   (P29037), 
TBP_NATPD   (Q3ITB1), TBP_PICTO   (Q6L1R1), TBP_PLAFA   (P32086), 
TBP_PROFL   (Q92117), TBP_PYRAB   (Q9V024), TBP_PYRAE   (Q8ZVR0), 
TBP_PYRCJ   (A3MV36), TBP_PYRFU   (P62000), TBP_PYRHO   (O58737), 
TBP_PYRIL   (A1RSQ1), TBP_PYRNV   (B1Y949), TBP_PYROC   (P58177), 
TBP_PYRWO   (P62001), TBP_SACS2   (P58178), TBP_SACSH   (Q55031), 
TBP_SCHPO   (P17871), TBP_SOLTU   (P26357), TBP_SOYBN   (Q42808), 
TBP_SPOFR   (P53361), TBP_STRPU   (P91809), TBP_SULAC   (Q9UWN7), 
TBP_SULTO   (Q971V3), TBP_TETTH   (Q27850), TBP_THEAC   (Q9HLM8), 
TBP_THECE   (Q56253), TBP_THEKO   (Q52366), TBP_THEON   (B6YXI6), 
TBP_THESM   (C6A0R1), TBP_THEVO   (Q978J5), TBP_TOBAC   (P93348), 
TBP_XENLA   (P27633), TBP_XENTR   (Q28GG8), TBP_YEAST   (P13393), 
TRF_DROME   (Q27896)
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

TBPL1_BOVIN (Q32LB1), TBPL1_DANRE (Q5U385), TBPL1_HUMAN (P62380), 

TBPL1_MACFA (Q4R848), TBPL1_MOUSE (P62340), TBPL1_PONAB (Q5R7U8), 
TBPL1_XENTR (Q6DIY4)
» more

PDB
[Detailed view]		 154 PDB

pdb_00001ais; pdb_00001c9b; pdb_00001cdw; pdb_00001d3u; pdb_00001jfi; pdb_00001mp9; pdb_00001ngm; pdb_00001nh2; pdb_00001nvp; pdb_00001pcz; pdb_00001qn3; pdb_00001qn4; pdb_00001qn5; pdb_00001qn6; pdb_00001qn7; pdb_00001qn8; pdb_00001qn9; pdb_00001qna; pdb_00001qnb; pdb_00001qnc; pdb_00001qne; pdb_00001rm1; pdb_00001tba; pdb_00001tbp; pdb_00001tgh; pdb_00001vok; pdb_00001vol; pdb_00001vtl; pdb_00001vto; pdb_00001ytb; pdb_00001ytf; pdb_00002z8u; pdb_00004b0a; pdb_00004roc; pdb_00004rod; pdb_00004roe; pdb_00004v1n; pdb_00004v1o; pdb_00005fmf; pdb_00005fur; pdb_00005fyw; pdb_00005fz5; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005n9g; pdb_00005oqj; pdb_00005oqm; pdb_00005sva; pdb_00006cnb; pdb_00006cnc; pdb_00006cnd; pdb_00006cnf; pdb_00006e16; pdb_00006e24; pdb_00006eu0; pdb_00006f40; pdb_00006f41; pdb_00006f42; pdb_00006f44; pdb_00006gyk; pdb_00006gyl; pdb_00006gym; pdb_00006mzd; pdb_00006mzl; pdb_00006mzm; pdb_00006njq; pdb_00006o9l; pdb_00006tbm; pdb_00006ueo; pdb_00006uep; pdb_00006ueq; pdb_00006uer; pdb_00007edx; pdb_00007eg7; pdb_00007eg8; pdb_00007eg9; pdb_00007ega; pdb_00007egb; pdb_00007egc; pdb_00007egd; pdb_00007ege; pdb_00007egf; pdb_00007egi; pdb_00007egj; pdb_00007ena; pdb_00007enc; pdb_00007lbm; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nvr; pdb_00007nvs; pdb_00007nvt; pdb_00007nvu; pdb_00007nvy; pdb_00007nvz; pdb_00007nw0; pdb_00007o4i; pdb_00007o4j; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007oh9; pdb_00007oha; pdb_00007ohb; pdb_00007q5b; pdb_00007z0o; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; pdb_00007zwc; pdb_00007zwd; pdb_00007zx7; pdb_00007zx8; pdb_00007zxe; pdb_00008bvw; pdb_00008byq; pdb_00008bz1; pdb_00008cen; pdb_00008ceo; pdb_00008ffz; pdb_00008gxq; pdb_00008gxs; pdb_00008h5b; pdb_00008ity; pdb_00008iue; pdb_00008iuh; pdb_00008s51; pdb_00008s52; pdb_00008s5n; pdb_00008umh; pdb_00008umi; pdb_00008uoq; pdb_00008uot; pdb_00008wak; pdb_00008wal; pdb_00008wan; pdb_00008wao; pdb_00008wap; pdb_00008waq; pdb_00008war; pdb_00008was; pdb_00009fso; pdb_00009fsp; pdb_00009fsq; pdb_00009fsr; pdb_00009fss
» more