PROSITE entry PS00351

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General information about the entry

Entry name [info]	TFIID
Accession [info]	PS00351
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00303

Name and characterization of the entry

Description [info]	Transcription factor TFIID repeat signature.
Pattern [info]	Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x- [STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	168 in 97 different sequences
Number of true positive hits	168 in 97 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	7
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	96.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	2
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

97 sequences

TBP1_ARATH  (P28147), TBP1_ENTH1  (P52653), TBP1_HALVD  (D4GZA2),

TBP1_MAIZE  (P50158), TBP1_METAC  (Q8TI26), TBP1_METMA  (Q8PY37), 
TBP1_WHEAT  (P26356), TBP2_ARATH  (P28148), TBP2_ENTH1  (C4M7H7), 
TBP2_HALVD  (D4H071), TBP2_MAIZE  (P50159), TBP2_METAC  (Q8TU94), 
TBP2_METMA  (Q8PY36), TBP2_ORYSJ  (Q8W0W4), TBP2_WHEAT  (Q02879), 
TBP3_METAC  (Q8TTZ7), TBP3_METMA  (Q8PUZ4), TBPB_HALSA  (Q48325), 
TBPE_HALSA  (Q9HN56), TBPF_HALSA  (Q9HHE9), TBPL1_ENTH1 (A7UFC2), 
TBPL2_DANRE (Q1JPY4), TBPL2_HUMAN (Q6SJ96), TBPL2_MOUSE (Q6SJ95), 
TBPL2_PANTR (A6H907), TBPL2_RAT   (A6H909), TBPL2_TAKRU (Q6SJ94), 
TBPL2_XENLA (Q5UE94), TBPL2_XENTR (Q28DH2), TBP_ACACA   (P26354), 
TBP_ACEPE   (P46272), TBP_AERPE   (Q9YAT1), TBP_ARCFU   (O29874), 
TBP_ARTSF   (O17488), TBP_BOMMO   (O45211), TBP_BOVIN   (Q2HJ52), 
TBP_CAEEL   (P32085), TBP_CANAL   (O43133), TBP_CHICK   (O13270), 
TBP_CRAGM   (Q92146), TBP_DANRE   (Q7SXL3), TBP_DICDI   (P26355), 
TBP_DROME   (P20227), TBP_DROVI   (Q9NHP5), TBP_EMENI   (Q12731), 
TBP_HALMA   (Q5V470), TBP_HUMAN   (P20226), TBP_MACFA   (Q4R4F5), 
TBP_MESAU   (P53360), TBP_MESCR   (P48511), TBP_META3   (A6UTF6), 
TBP_METJA   (Q57930), TBP_METKA   (Q8TX38), TBP_METM6   (A9A840), 
TBP_METM7   (A6VIP7), TBP_METMP   (Q6M0L3), TBP_METS3   (A5UL47), 
TBP_METST   (Q2NFC3), TBP_METTH   (O27664), TBP_METTL   (Q9P9I9), 
TBP_METTP   (A0B5H8), TBP_METVS   (A6URP5), TBP_MOUSE   (P29037), 
TBP_NATPD   (Q3ITB1), TBP_PICTO   (Q6L1R1), TBP_PLAFA   (P32086), 
TBP_PROFL   (Q92117), TBP_PYRAB   (Q9V024), TBP_PYRAE   (Q8ZVR0), 
TBP_PYRCJ   (A3MV36), TBP_PYRFU   (P62000), TBP_PYRHO   (O58737), 
TBP_PYRIL   (A1RSQ1), TBP_PYRNV   (B1Y949), TBP_PYROC   (P58177), 
TBP_PYRWO   (P62001), TBP_SACS2   (P58178), TBP_SACSH   (Q55031), 
TBP_SCHPO   (P17871), TBP_SOLTU   (P26357), TBP_SOYBN   (Q42808), 
TBP_SPOFR   (P53361), TBP_STRPU   (P91809), TBP_SULAC   (Q9UWN7), 
TBP_SULTO   (Q971V3), TBP_TETTH   (Q27850), TBP_THEAC   (Q9HLM8), 
TBP_THECE   (Q56253), TBP_THEKO   (Q52366), TBP_THEON   (B6YXI6), 
TBP_THESM   (C6A0R1), TBP_THEVO   (Q978J5), TBP_TOBAC   (P93348), 
TBP_XENLA   (P27633), TBP_XENTR   (Q28GG8), TBP_YEAST   (P13393), 
TRF_DROME   (Q27896)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

7 sequences

TBPL1_BOVIN (Q32LB1), TBPL1_DANRE (Q5U385), TBPL1_HUMAN (P62380),

TBPL1_MACFA (Q4R848), TBPL1_MOUSE (P62340), TBPL1_PONAB (Q5R7U8), 
TBPL1_XENTR (Q6DIY4)

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PDB
[Detailed view]

143 PDB

1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; 1QN5; 1QN6; 1QN7; 1QN8; 1QN9; 1QNA; 1QNB; 1QNC; 1QNE; 1RM1; 1TBA; 1TBP; 1TGH; 1VOK; 1VOL; 1VTL; 1VTO; 1YTB; 1YTF; 2Z8U; 4B0A; 4ROC; 4ROD; 4ROE; 4V1N; 4V1O; 5FMF; 5FUR; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5N9G; 5OQJ; 5OQM; 5SVA; 6CNB; 6CNC; 6CND; 6CNF; 6E16; 6E24; 6EU0; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6MZD; 6MZL; 6MZM; 6NJQ; 6O9L; 6TBM; 6UEO; 6UEP; 6UEQ; 6UER; 7EDX; 7EG7; 7EG8; 7EG9; 7EGA; 7EGB; 7EGC; 7EGD; 7EGE; 7EGF; 7EGI; 7EGJ; 7ENA; 7ENC; 7LBM; 7ML0; 7ML1; 7ML2; 7ML4; 7NVR; 7NVS; 7NVT; 7NVU; 7NVY; 7NVZ; 7NW0; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OH9; 7OHA; 7OHB; 7Q5B; 7Z0O; 7ZS9; 7ZSA; 7ZSB; 7ZWC; 7ZWD; 7ZX7; 7ZX8; 7ZXE; 8BVW; 8BYQ; 8BZ1; 8FFZ; 8GXQ; 8GXS; 8H5B; 8ITY; 8IUE; 8IUH; 8S51; 8S52; 8S5N; 8WAK; 8WAL; 8WAN; 8WAO; 8WAP; 8WAQ; 8WAR; 8WAS
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