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Entry: PS00351 |
Entry name [info] | TFIID |
Accession [info] | PS00351 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00303 |
Description [info] | Transcription factor TFIID repeat signature. |
Pattern [info] |
Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x- [STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF]. |
Total number of hits | 168 in 97 different sequences |
Number of true positive hits | 168 in 97 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 96.00 % |
Taxonomic range [info] | Archaea, Eukaryotes |
Maximum number of repetitions [info] | 2 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
97 sequences
TBP1_ARATH (P28147 ), TBP1_ENTHI (P52653 ), TBP1_HALVD (D4GZA2 ), TBP1_MAIZE (P50158 ), TBP1_METAC (Q8TI26 ), TBP1_METMA (Q8PY37 ), TBP1_WHEAT (P26356 ), TBP2_ARATH (P28148 ), TBP2_ENTHI (C4M7H7 ), TBP2_HALVD (D4H071 ), TBP2_MAIZE (P50159 ), TBP2_METAC (Q8TU94 ), TBP2_METMA (Q8PY36 ), TBP2_ORYSJ (Q8W0W4 ), TBP2_WHEAT (Q02879 ), TBP3_METAC (Q8TTZ7 ), TBP3_METMA (Q8PUZ4 ), TBPB_HALSA (Q48325 ), TBPE_HALSA (Q9HN56 ), TBPF_HALSA (Q9HHE9 ), TBPL1_ENTHI (A7UFC2 ), TBPL2_DANRE (Q1JPY4 ), TBPL2_HUMAN (Q6SJ96 ), TBPL2_MOUSE (Q6SJ95 ), TBPL2_PANTR (A6H907 ), TBPL2_RAT (A6H909 ), TBPL2_TAKRU (Q6SJ94 ), TBPL2_XENLA (Q5UE94 ), TBPL2_XENTR (Q28DH2 ), TBP_ACACA (P26354 ), TBP_ACEPE (P46272 ), TBP_AERPE (Q9YAT1 ), TBP_ARCFU (O29874 ), TBP_ARTSF (O17488 ), TBP_BOMMO (O45211 ), TBP_BOVIN (Q2HJ52 ), TBP_CAEEL (P32085 ), TBP_CANAL (O43133 ), TBP_CHICK (O13270 ), TBP_DANRE (Q7SXL3 ), TBP_DICDI (P26355 ), TBP_DROME (P20227 ), TBP_DROVI (Q9NHP5 ), TBP_EMENI (Q12731 ), TBP_HALMA (Q5V470 ), TBP_HUMAN (P20226 ), TBP_MACFA (Q4R4F5 ), TBP_MESAU (P53360 ), TBP_MESCR (P48511 ), TBP_META3 (A6UTF6 ), TBP_METJA (Q57930 ), TBP_METKA (Q8TX38 ), TBP_METM6 (A9A840 ), TBP_METM7 (A6VIP7 ), TBP_METMP (Q6M0L3 ), TBP_METS3 (A5UL47 ), TBP_METST (Q2NFC3 ), TBP_METTH (O27664 ), TBP_METTL (Q9P9I9 ), TBP_METTP (A0B5H8 ), TBP_METVS (A6URP5 ), TBP_MOUSE (P29037 ), TBP_NATPD (Q3ITB1 ), TBP_PICTO (Q6L1R1 ), TBP_PLAFA (P32086 ), TBP_PROFL (Q92117 ), TBP_PYRAB (Q9V024 ), TBP_PYRAE (Q8ZVR0 ), TBP_PYRCJ (A3MV36 ), TBP_PYRFU (P62000 ), TBP_PYRHO (O58737 ), TBP_PYRIL (A1RSQ1 ), TBP_PYRNV (B1Y949 ), TBP_PYROC (P58177 ), TBP_PYRWO (P62001 ), TBP_SACS2 (P58178 ), TBP_SACSH (Q55031 ), TBP_SCHPO (P17871 ), TBP_SOLTU (P26357 ), TBP_SOYBN (Q42808 ), TBP_SPOFR (P53361 ), TBP_STRPU (P91809 ), TBP_SULAC (Q9UWN7 ), TBP_SULTO (Q971V3 ), TBP_TETTH (Q27850 ), TBP_THEAC (Q9HLM8 ), TBP_THECE (Q56253 ), TBP_THEKO (Q52366 ), TBP_THEON (B6YXI6 ), TBP_THESM (C6A0R1 ), TBP_THEVO (Q978J5 ), TBP_TOBAC (P93348 ), TBP_TRIGA (Q92146 ), TBP_XENLA (P27633 ), TBP_XENTR (Q28GG8 ), TBP_YEAST (P13393 ), TRF_DROME (Q27896 )» more
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UniProtKB/Swiss-Prot False negative sequences |
7 sequences
TBPL1_BOVIN (Q32LB1 ), TBPL1_DANRE (Q5U385 ), TBPL1_HUMAN (P62380 ), TBPL1_MACFA (Q4R848 ), TBPL1_MOUSE (P62340 ), TBPL1_PONAB (Q5R7U8 ), TBPL1_XENTR (Q6DIY4 )» more |
PDB [Detailed view] |
78 PDB
1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; 1QN5; 1QN6; 1QN7; 1QN8; 1QN9; 1QNA; 1QNB; 1QNC; 1QNE; 1RM1; 1TBA; 1TBP; 1TGH; 1VOK; 1VOL; 1VTL; 1VTO; 1YTB; 1YTF; 2Z8U; 4B0A; 4ROC; 4ROD; 4ROE; 4V1N; 4V1O; 5FMF; 5FUR; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5N9G; 5OQJ; 5OQM; 5SVA; 6CNB; 6CNC; 6CND; 6CNF; 6E16; 6E24; 6EU0; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6MZD; 6MZL; 6MZM; 6NJQ; 6O9L; 6TBM; 6UEO; 6UEP; 6UEQ; 6UER » more |