PROSITE entry PS00354
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General information about the entry
Entry name [info] | HMGI_Y |
Accession [info] | PS00354 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-OCT-1993 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00306 |
Name and characterization of the entry
Description [info] | HMG-I and HMG-Y DNA-binding domain (A+T-hook). |
Pattern [info] |
[AT]-x(1,2)-[RK](2)-[GP]-R-G-R-P-[RK]-x. |
Numerical results [info]
Total number of hits | 39 in 27 different sequences |
Number of true positive hits | 32 in 20 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 7 in 7 different sequences |
Number of false negative sequences | 6 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 82.05 % |
Recall (true positives / (true positives + false negatives)) | 84.21 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 3 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
20 sequences
AFFL_DROER (B3NAM7), AFFL_DROGR (B4JQ42), AFFL_DROME (Q9VQI9), AFFL_DROMO (B4KFE1), AFFL_DROPS (Q29KG4), AFFL_DROVI (B4LV24), AFFL_DROWI (B4MUE1), AFFL_DROYA (B4NXA8), HMGA1_CANLF (Q6URC2), HMGA1_CRIGR (Q9QXP3), HMGA1_HUMAN (P17096), HMGA1_MOUSE (P17095), HMGA1_RAT (Q8K585), HMGA2_HUMAN (P52926), KMT2C_HUMAN (Q8NEZ4), KMT2C_MOUSE (Q8BRH4), MYNN_DANRE (Q7ZVR6), PATZ1_HUMAN (Q9HBE1), PATZ1_MOUSE (Q5NBY9), PRH_PETCR (P48786)» more
|
UniProtKB/Swiss-Prot False negative sequences |
6 sequences
AFFL_DROAN (B3MLB7), CHIF_DROME (Q9NK54), HMGA1_CHITE (Q23794), HMGA2_MOUSE (P52927), LI15B_CAEEL (Q27395), SFC3_SCHPO (Q9UST7)» more |
UniProtKB/Swiss-Prot False positive sequences |
7 sequences
BRLF1_SHV21 (Q01012), CE087_XENLA (Q5XG50), HQ1_COXBU (Q45881), KMT2A_HUMAN (Q03164), KMT2A_MOUSE (P55200), SLX4_MAGO7 (A4R1T1), WHIB7_MYCS2 (A0QTT1)» more |
PDB [Detailed view] |
2 PDB
2EZD; 2EZE |