PROSITE entry PS00394

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General information about the entry

Entry name [info]	DNA_PHOTOLYASES_1_1
Accession [info]	PS00394
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00331

Name and characterization of the entry

Description [info]	DNA photolyases class 1 signature 1.
Pattern [info]	T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	26 in 26 different sequences
Number of true positive hits	26 in 26 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	25
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	50.98 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

26 sequences

CRY1_AEDAE  (Q17DK5), CRY1_ANOGA  (Q7PYI7), CRY1_ARATH  (Q43125),

CRY1_CULQU  (B0WRR9), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
CRY2_VIBCH  (Q9KS67), CRYD_GLOVI  (Q7NMD1), CRYD_OSTTA  (Q5IFN2), 
CRYD_RHOBA  (Q7UJB1), CRYD_SYNY3  (P77967), PHRA_AGRFC  (A9CJC9), 
PHR_ALKPO   (Q04449), PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), 
PHR_ECOLI   (P00914), PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), 
PHR_SALTY   (P25078), PHR_STRGR   (P12768), PHR_SYNP6   (P05327), 
PHR_SYNY3   (Q55081), PHR_THET2   (P61496), PHR_THET8   (P61497), 
PHR_VIBCH   (Q9KNA8), PHR_YEAST   (P05066)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

25 sequences

CRY1_CHICK  (Q8QG61), CRY1_DROME  (O77059), CRY1_DROPS  (Q293P8),

CRY1_ERIRU  (Q5IZC5), CRY1_HUMAN  (Q16526), CRY1_MACFA  (Q8WP19), 
CRY1_MOUSE  (P97784), CRY1_RAT(Q32Q86), CRY1_SPAJD  (Q70AD6), 
CRY1_SYLBO  (Q6ZZY0), CRY2_CHICK  (Q8QG60), CRY2_HUMAN  (Q49AN0), 
CRY2_MOUSE  (Q9R194), CRY2_RAT(Q923I8), CRYD_DANRE  (Q4KML2), 
CRYD_IDILO  (Q5QXE0), CRYD_NATPD  (Q3IPX9), CRYD_NEUCR  (Q7SI68), 
CRYD_ORYSJ  (Q651U1), CRYD_SOLLC  (Q38JU2), CRYD_VIBCH  (Q9KR33), 
CRYD_VIBPA  (Q87JP5), CRYD_XENLA  (Q75WS4), UVR3_ARATH  (O48652), 
UVR3_ORYSJ  (Q0E2Y1)

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PDB
[Detailed view]

23 PDB

1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63; 6K8I; 6K8K; 6M79; 6X24; 7X0X; 7X0Y
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