PROSITE entry PS00394
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General information about the entry
Entry name [info] | DNA_PHOTOLYASES_1_1 |
Accession [info] | PS00394 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00331 |
Name and characterization of the entry
Description [info] | DNA photolyases class 1 signature 1. |
Pattern [info] |
T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM]. |
Numerical results [info]
Total number of hits | 26 in 26 different sequences |
Number of true positive hits | 26 in 26 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 25 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 50.98 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
26 sequences
CRY1_AEDAE (Q17DK5), CRY1_ANOGA (Q7PYI7), CRY1_ARATH (Q43125), CRY1_CULQU (B0WRR9), CRY1_SINAL (P40115), CRY2_ARATH (Q96524), CRY2_VIBCH (Q9KS67), CRYD_GLOVI (Q7NMD1), CRYD_OSTTA (Q5IFN2), CRYD_RHOBA (Q7UJB1), CRYD_SYNY3 (P77967), PHRA_AGRFC (A9CJC9), PHR_ALKPO (Q04449), PHR_BUCAI (P57386), PHR_BUCBP (Q89AJ9), PHR_ECOLI (P00914), PHR_HALSA (Q9HQ46), PHR_NEUCR (P27526), PHR_SALTY (P25078), PHR_STRGR (P12768), PHR_SYNP6 (P05327), PHR_SYNY3 (Q55081), PHR_THET2 (P61496), PHR_THET8 (P61497), PHR_VIBCH (Q9KNA8), PHR_YEAST (P05066)» more
|
UniProtKB/Swiss-Prot False negative sequences |
25 sequences
CRY1_CHICK (Q8QG61), CRY1_DROME (O77059), CRY1_DROPS (Q293P8), CRY1_ERIRU (Q5IZC5), CRY1_HUMAN (Q16526), CRY1_MACFA (Q8WP19), CRY1_MOUSE (P97784), CRY1_RAT(Q32Q86), CRY1_SPAJD (Q70AD6), CRY1_SYLBO (Q6ZZY0), CRY2_CHICK (Q8QG60), CRY2_HUMAN (Q49AN0), CRY2_MOUSE (Q9R194), CRY2_RAT(Q923I8), CRYD_DANRE (Q4KML2), CRYD_IDILO (Q5QXE0), CRYD_NATPD (Q3IPX9), CRYD_NEUCR (Q7SI68), CRYD_ORYSJ (Q651U1), CRYD_SOLLC (Q38JU2), CRYD_VIBCH (Q9KR33), CRYD_VIBPA (Q87JP5), CRYD_XENLA (Q75WS4), UVR3_ARATH (O48652), UVR3_ORYSJ (Q0E2Y1)» more |
PDB [Detailed view] |
23 PDB
1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63; 6K8I; 6K8K; 6M79; 6X24; 7X0X; 7X0Y » more |