PROSITE entry PS00400

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General information about the entry

Entry name [info]	LBP_BPI_CETP
Accession [info]	PS00400
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00367

Name and characterization of the entry

Description [info]	LBP / BPI / CETP family signature.
Pattern [info]	[PA]-[GA]-[LIVMC]-x(2)-R-[IV]-[ST]-x(3)-L-x(5)-[EQAV]-x(4)-[LIVM]-[EQK]- x(8)-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.

Total number of hits	15 in 15 different sequences
Number of true positive hits	15 in 15 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	15
Number of 'partial' sequences	2

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	50.00 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	15 sequences BPIFC_HUMAN (Q8NFQ6 ), BPIFC_MOUSE (Q8C186 ), BPI_BOVIN (P17453 ), BPI_HUMAN (P17213 ), CETP_CRIGR (G3HIK4 ), CETP_HUMAN (P11597 ), CETP_MACFA (P47896 ), CETP_RABIT (P22687 ), LBP_BOVIN (Q2TBI0 ), LBP_HUMAN (P18428 ), LBP_MOUSE (Q61805 ), LBP_RABIT (P17454 ), LBP_RAT (Q63313 ), PLTP_HUMAN (P55058 ), PLTP_MOUSE (P55065 ) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	15 sequences BPIB2_HUMAN (Q8N4F0 ), BPIB2_MOUSE (Q8C1E1 ), BPIB3_HUMAN (P59826 ), BPIB3_MOUSE (Q80ZU7 ), BPIB3_RAT (Q05701 ), BPIB4_HUMAN (P59827 ), BPIB4_MOUSE (A2BGH0 ), BPIB4_RAT (Q05704 ), BPIB6_HUMAN (Q8NFQ5 ), BPIB6_MOUSE (Q8BU51 ), BPI_MOUSE (Q67E05 ), BPI_RAT (Q6AXU0 ), LATH_HORSE (P82615 ), NRF5_CAEEL (Q93796 ), YSV5_CAEEL (Q10011 ) » more
UniProtKB/Swiss-Prot 'Partial' sequences	2 sequences BPI_RABIT (Q28739 ), CETP_MESAU (P25914 )
PDB [Detailed view]	6 PDB 1BP1; 1EWF; 2OBD; 4EWS; 4F2A; 4M4D