We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS00414
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PURL: https://purl.expasy.org/prosite/signature/PS00414
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General information about the entry
| Entry name [info] | PROFILIN |
| Accession [info] | PS00414 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-1991 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00372 |
Name and characterization of the entry
| Description [info] | Profilin signature. |
| Pattern [info] |
<x(0,1)-[STA]-x(0,1)-W-[DENQH]-x-[YI]-x-[DEQ]. |
Numerical results [info]
| Total number of hits | 229 in 229 different sequences |
| Number of true positive hits | 225 in 225 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 4 in 4 different sequences |
| Number of false negative sequences | 16 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 98.25 % |
| Recall (true positives / (true positives + false negatives)) | 93.36 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
225 sequences
PRF01_KALTU (C6JWH0), PRF02_KALTU (E2D0Y9), PRF03_KALTU (W8P570), PRF1_ARATH (Q42449), PRF2_ARATH (Q42418), PRF3_ARATH (Q9FE63), PRF4_ARATH (Q38904), PRF5_ARATH (Q38905), PRO10_MAIZE (A4KA59), PRO10_PHLPR (A4KA38), PRO11_MAIZE (A4KA60), PRO12_MAIZE (A4KA61), PRO1A_ACACA (P68696), PRO1B_ACACA (Q95VF7), PROAA_OLEEU (A4GD56), PROAB_OLEEU (P0DKE6), PROAC_OLEEU (P0DKE7), PROAD_OLEEU (P0DKE8), PROAE_OLEEU (P0DKE9), PROAF_OLEEU (P0DKF0), PROAG_OLEEU (P0DKF1), PROAH_OLEEU (P0DKF2), PROAI_OLEEU (P0DKF3), PROAJ_OLEEU (A4GD58), PROAK_OLEEU (A4GDQ6), PROAL_OLEEU (A4GDQ8), PROAM_OLEEU (P0DKF4), PROAN_OLEEU (P0DKF5), PROAO_OLEEU (P0DKF6), PROAP_OLEEU (P0DKF7), PROAQ_OLEEU (P0DKF8), PROAR_OLEEU (P0DKF9), PROAS_OLEEU (A4GDR1), PROAT_OLEEU (A4GDR3), PROAU_OLEEU (A4GDR4), PROAV_OLEEU (A4GDR6), PROAW_OLEEU (A4GDR7), PROAX_OLEEU (A4GDR8), PROAY_OLEEU (A4GDR9), PROAZ_OLEEU (A4GDS0), PROBA_OLEEU (A4GDS6), PROBB_OLEEU (A4GDS7), PROBC_OLEEU (A4GDS9), PROBD_OLEEU (A4GDT0), PROBE_OLEEU (A4GDT1), PROBF_OLEEU (A4GDT3), PROBH_OLEEU (A4GDT5), PROBI_OLEEU (A4GDT9), PROBJ_OLEEU (A4GDU0), PROBK_OLEEU (A4GDU2), PROBL_OLEEU (A4GDU3), PROBM_OLEEU (A4GDU5), PROBN_OLEEU (A4GDU6), PROBO_OLEEU (A4GE38), PROBP_OLEEU (A4GE39), PROBQ_OLEEU (A4GE42), PROBR_OLEEU (A4GE44), PROBS_OLEEU (A4GE45), PROBT_OLEEU (A4GE47), PROBU_OLEEU (A4GE48), PROBV_OLEEU (A4GE49), PROBW_OLEEU (A4GE50), PROBX_OLEEU (A4GE53), PROBY_OLEEU (A4GE54), PROBZ_OLEEU (A4GE55), PROCA_OLEEU (A4GFB7), PROCB_OLEEU (P0DKG0), PROCC_OLEEU (P0DKG1), PROCE_OLEEU (A4GFC0), PROCF_OLEEU (A4GFC2), PROCH_OLEEU (A4GFC4), PROCI_OLEEU (A4KA49), PROCJ_OLEEU (A4KA50), PROCK_OLEEU (A4KA51), PROCL_OLEEU (A4KA52), PROCM_OLEEU (A4KA53), PROCN_OLEEU (A4KA54), PROF1_AMBAR (Q64LH1), PROF1_ARTVU (Q8H2C9), PROF1_BETPN (P25816), PROF1_BOVIN (P02584), PROF1_CAEEL (Q9XW16), PROF1_CITSI (P84177), PROF1_CORAV (A4KA39), PROF1_DICDI (P26199), PROF1_ENTH1 (P49230), PROF1_HEVBR (O65812), PROF1_HORVU (P52184), PROF1_HUMAN (P07737), PROF1_LILLO (Q9SNW7), PROF1_MAIZE (P35081), PROF1_MALDO (Q9XF40), PROF1_MOUSE (P62962), PROF1_PARJU (Q9XG85), PROF1_PHAVU (P49231), PROF1_PHLPR (P35079), PROF1_PHYPO (P22271), PROF1_RAT (P62963), PROF1_RICCO (O82572), PROF1_SOLLC (Q41344), PROF1_SOYBN (O65809), PROF1_STRPU (P32006), PROF1_TOBAC (P41372), PROF1_WHEAT (P49232), PROF2_ACACA (P19984), PROF2_AMBAR (Q64LH2), PROF2_ARTVU (Q8H2C8), PROF2_BETPN (A4K9Z8), PROF2_BOVIN (Q09430), PROF2_CORAV (A4KA40), PROF2_DICDI (P26200), PROF2_HEVBR (Q9STB6), PROF2_HUMAN (P35080), PROF2_LILLO (Q9SNW6), PROF2_MACFA (Q4R4P8), PROF2_MAIZE (P35082), PROF2_MALDO (Q9XF41), PROF2_MOUSE (Q9JJV2), PROF2_PARJU (Q9T0M8), PROF2_PHLPR (O24650), PROF2_PHYPO (P18322), PROF2_PONAB (Q5R4E2), PROF2_RAT (Q9EPC6), PROF2_SOLLC (Q93YG7), PROF2_SOYBN (O65810), PROF2_TOBAC (Q9ST99), PROF2_WHEAT (P49233), PROF3_AMBAR (Q64LH0), PROF3_CORAV (A4KA44), PROF3_DICDI (Q8T8M2), PROF3_HEVBR (Q9M7N0), PROF3_LILLO (Q9SNW5), PROF3_MAIZE (P35083), PROF3_MALDO (Q9XF42), PROF3_PHLPR (O24282), PROF3_TOBAC (Q9ST98), PROF4_CORAV (A4KA45), PROF4_HEVBR (Q9M7M9), PROF4_MAIZE (O22655), PROF4_PHLPR (A4KA31), PROF5_CORAV (A4KA41), PROF5_HEVBR (Q9M7M8), PROF5_MAIZE (Q9FR39), PROF5_PHLPR (A4KA32), PROF6_CORAV (A4KA43), PROF6_HEVBR (Q9LEI8), PROF6_MAIZE (A4KA55), PROF6_PHLPR (A4KA33), PROF7_MAIZE (A4KA56), PROF7_PHLPR (A4KA34), PROF8_MAIZE (A4KA57), PROF8_PHLPR (A4KA36), PROF9_MAIZE (A4KA58), PROF9_PHLPR (A4KA37), PROFA_OLEEU (O24169), PROFA_ORYSJ (Q9FUD1), PROFB_OLEEU (O24170), PROFC_OLEEU (O24171), PROFD_OLEEU (P0DKD0), PROFF_OLEEU (A4GCR6), PROFG_OLEEU (P0DKD1), PROFH_OLEEU (P0DKD2), PROFI_OLEEU (P0DKD3), PROFJ_OLEEU (P0DKD4), PROFK_OLEEU (P0DKD5), PROFL_OLEEU (P0DKD6), PROFM_OLEEU (P0DKD7), PROFN_OLEEU (P0DKD8), PROFO_OLEEU (P0DKD9), PROFP_OLEEU (A4GCR7), PROFQ_OLEEU (A4GCR8), PROFR_OLEEU (P0DKE0), PROFS_OLEEU (P0DKE1), PROFU_OLEEU (P0DKE2), PROFV_OLEEU (P0DKE3), PROFW_OLEEU (P0DKE4), PROFX_OLEEU (P0DKE5), PROFX_ORYSI (P83647), PROFX_ORYSJ (Q5VMJ3), PROFY_OLEEU (A4GD54), PROFZ_OLEEU (A4GD55), PROF_ACTDE (C0HL99), PROF_ANACO (Q94JN2), PROF_APIGR (Q9XF37), PROF_ARAHY (Q9SQI9), PROF_BOMMO (Q68HB4), PROF_BRABE (Q8T938), PROF_BRANA (Q9FUB8), PROF_CANAX (P53696), PROF_CAPAN (Q93YI9), PROF_CHEAL (Q84V37), PROF_CITLA (Q5XWE1), PROF_CLYJA (P18321), PROF_CROSA (Q5EF31), PROF_CUCME (Q5FX67), PROF_CWPXB (Q77DS0), PROF_CWPXG (Q80DT4), PROF_CYNDA (O04725), PROF_DAUCA (Q8SAE6), PROF_DROME (P25843), PROF_FRAAN (P0C0Y3), PROF_HELAN (O81982), PROF_HELCR (P18320), PROF_LITCN (Q941H7), PROF_MERAN (O49894), PROF_MONPV (A0A7H0DND9), PROF_MONPZ (Q8V4T7), PROF_MUSAC (Q94JN3), PROF_PHODC (Q8L5D8), PROF_PRUAV (Q9XF39), PROF_PRUDU (Q8GSL5), PROF_PRUPE (Q8GT39), PROF_PYRCO (Q9XF38), PROF_RABPU (Q6RZE1), PROF_SCHPO (P39825), PROF_SUBDO (Q9U0E6), PROF_TETPY (P23412), PROF_TRYBB (Q26734), PROF_VACCA (O57243), PROF_VACCC (P68695), PROF_VACCT (Q77TH1), PROF_VACCW (Q76ZN5), PROF_VAR67 (P0DSW5), PROF_VARV (P0DSW6), PROF_YEAST (P07274)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
16 sequences
PROF2_CAEEL (Q20025), PROF3_BOVIN (Q32PB1), PROF3_CAEEL (Q21193), PROF3_HUMAN (P60673), PROF3_MOUSE (Q9DAD6), PROF3_RAT (M0RCP6), PROF3_WHEAT (P49234), PROF4_BOVIN (Q2NKT1), PROF4_HUMAN (Q8NHR9), PROF4_MOUSE (Q9D6I3), PROF4_RAT (Q5IRJ7), PROF_APIME (Q6QEJ7), PROF_NAEPR (Q6QNF8), PROF_PLABE (B8QYR5), PROF_PLAF7 (Q8I2J4), PROF_PLAFX (P86294)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
PROF_BETVU (P85984) |
| UniProtKB/Swiss-Prot False positive sequences |
4 sequences
BIOF_PROMH (B4ESU4), LCGA_LACLL (P36961), PSB30_PSINU (Q8WI31), YECM_ECOLI (P52007)» more |
| PDB [Detailed view] |
46 PDB
pdb_00001a0k; pdb_00001acf; pdb_00001cjf; pdb_00001cqa; pdb_00001d1j; pdb_00001f2k; pdb_00001fik; pdb_00001fil; pdb_00001g5u; pdb_00001hlu; pdb_00001k0k; pdb_00001pfl; pdb_00001pne; pdb_00001prq; pdb_00001ypr; pdb_00002acg; pdb_00002btf; pdb_00002pav; pdb_00002pbd; pdb_00002prf; pdb_00002v8c; pdb_00002v8f; pdb_00003chw; pdb_00003d9y; pdb_00003dav; pdb_00003nul; pdb_00003u4l; pdb_00003ub5; pdb_00004x1l; pdb_00004x1m; pdb_00004x25; pdb_00005fds; pdb_00005feg; pdb_00005nzb; pdb_00005nzc; pdb_00006iqf; pdb_00006iqi; pdb_00006iqj; pdb_00006nas; pdb_00006nbe; pdb_00006nbw; pdb_00007kyw; pdb_00007p1h; pdb_00008bjj; pdb_00008rty; pdb_00009azp » more |