PROSITE entry PS00422

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	GRANINS_1
Accession [info]	PS00422
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00365

Name and characterization of the entry

Description [info]	Granins signature 1.
Pattern [info]	[DE]-[SN]-L-[SAN]-{EGI}-{ELT}-[DE]-x-E-L.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	27 in 27 different sequences
Number of true positive hits	18 in 18 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 9 different sequences
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	66.67 %
Recall (true positives / (true positives + false negatives))	81.82 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

18 sequences

CMGA_BOVIN  (P05059), CMGA_HORSE  (Q9XS63), CMGA_HUMAN  (P10645),

CMGA_MOUSE  (P26339), CMGA_PIG(P04404), CMGA_RAT(P10354), 
CMGA_STRCA  (P33716), SCG1_BOVIN  (P23389), SCG1_HUMAN  (P05060), 
SCG1_MOUSE  (P16014), SCG1_PIG(Q9GLG4), SCG1_RAT(O35314), 
SCG2_BOVIN  (P20616), SCG2_HUMAN  (P13521), SCG2_MACFA  (Q4R5E9), 
SCG2_PIG(Q5FZP5), SCG2_PONAB  (Q5R4M6), SCG2_RAT(P10362)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

SCG2A_DANRE (C0HM54), SCG2B_DANRE (A0JMK6), SCG2_MOUSE  (Q03517),

SCG2_PELRI  (P30945)

» more

UniProtKB/Swiss-Prot
False positive sequences

9 sequences

CPRC2_CANPA (Q76L36), EVI5L_HUMAN (Q96CN4), GLYA_CERS4  (Q3IZN2),

M3K7_DROME  (Q9V3Q6), PPR29_MOUSE (Q68FM6), RHGF_DROME  (X2JDY8), 
RNY_DESAP   (B1I3H5), TWIST_XENLA (P13903), Y534_METFV  (P56509)

» more