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PROSITE entry PS00446


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PURL: https://purl.expasy.org/prosite/signature/PS00446

Direct ScanProsite submission
General information about the entry

Entry name [info] RNA_POL_D_30KD
Accession [info] PS00446
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00411

Name and characterization of the entry

Description [info] RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info] 
N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x-
[LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 44 in 44 different sequences
Number of true positive hits 44 in 44 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 44 sequences 

CNJC_TETTH  (P16925), NRPB3_ARATH (Q39211), RPAC1_BOVIN (Q32L22), 

RPAC1_DICDI (Q54SN4), RPAC1_HUMAN (O15160), RPAC1_MOUSE (P52432), 
RPAC1_SCHPO (O94616), RPAC1_YEAST (P07703), RPB3_BOVIN  (Q3T0Q3), 
RPB3_HUMAN  (P19387), RPB3_MOUSE  (P97760), RPB3_SCHPO  (P37382), 
RPB3_YEAST  (P16370), RPD3B_ARATH (Q39212), RPO3_AERPE  (Q9YB53), 
RPO3_ARCFU  (O28002), RPO3_HALMA  (Q00813), RPO3_HALS3  (B0R4Y2), 
RPO3_HALSA  (Q9HQJ4), RPO3_METAC  (P0CG28), RPO3_METJA  (Q57648), 
RPO3_METKA  (Q8TVB8), RPO3_METMA  (Q8PV16), RPO3_METST  (Q2NFZ6), 
RPO3_METTH  (O26144), RPO3_PYRAB  (Q9V198), RPO3_PYRAE  (Q8ZYQ3), 
RPO3_PYRAR  (A4WNA4), RPO3_PYRCJ  (A3MXZ5), RPO3_PYRFU  (Q8U0E4), 
RPO3_PYRHO  (O59303), RPO3_PYRIL  (A1RSE3), RPO3_PYRNV  (B1YC30), 
RPO3_SACI1  (C3NMQ0), RPO3_SACI2  (C3MJP7), RPO3_SACI3  (C3N054), 
RPO3_SACI4  (C3MZ05), RPO3_SACI6  (C4KJ93), RPO3_SACI7  (C3N8R8), 
RPO3_SACS2  (P95989), RPO3_SACSH  (B8YB56), RPO3_SULAC  (P39471), 
RPO3_SULTO  (Q96YW0), RPO3_THEKO  (Q5JJF4)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

RPB3_DICDI  (Q54DH7), RPO3_METS3  (A5UN55), RPO3_NATPD  (Q3IQT6), 

RPO3_PICTO  (Q6KZP5), RPO3_THEAC  (Q9HJD9), RPO3_THEVO  (Q97B93)
» more

PDB
[Detailed view]		 337 PDB

pdb_00001i3q; pdb_00001i50; pdb_00001i6h; pdb_00001k83; pdb_00001nik; pdb_00001nt9; pdb_00001pqv; pdb_00001r5u; pdb_00001r9s; pdb_00001r9t; pdb_00001sfo; pdb_00001twa; pdb_00001twc; pdb_00001twf; pdb_00001twg; pdb_00001twh; pdb_00001wcm; pdb_00001y1v; pdb_00001y1w; pdb_00001y1y; pdb_00001y77; pdb_00002b63; pdb_00002b8k; pdb_00002e2h; pdb_00002e2i; pdb_00002e2j; pdb_00002ja5; pdb_00002ja6; pdb_00002ja7; pdb_00002ja8; pdb_00002nvq; pdb_00002nvt; pdb_00002nvx; pdb_00002nvy; pdb_00002nvz; pdb_00002pa8; pdb_00002pmz; pdb_00002r7z; pdb_00002r92; pdb_00002r93; pdb_00002vum; pdb_00002waq; pdb_00002wb1; pdb_00002y0s; pdb_00002yu9; pdb_00003cqz; pdb_00003fki; pdb_00003gtg; pdb_00003gtj; pdb_00003gtk; pdb_00003gtl; pdb_00003gtm; pdb_00003gto; pdb_00003gtp; pdb_00003gtq; pdb_00003h0g; pdb_00003h3v; pdb_00003hkz; pdb_00003hou; pdb_00003hov; pdb_00003how; pdb_00003hox; pdb_00003hoy; pdb_00003hoz; pdb_00003i4m; pdb_00003i4n; pdb_00003j0k; pdb_00003j1n; pdb_00003k1f; pdb_00003k7a; pdb_00003m3y; pdb_00003m4o; pdb_00003po2; pdb_00003po3; pdb_00003qt1; pdb_00003rzd; pdb_00003rzo; pdb_00003s14; pdb_00003s15; pdb_00003s16; pdb_00003s17; pdb_00003s1m; pdb_00003s1n; pdb_00003s1q; pdb_00003s1r; pdb_00003s2d; pdb_00003s2h; pdb_00004a3b; pdb_00004a3c; pdb_00004a3d; pdb_00004a3e; pdb_00004a3f; pdb_00004a3g; pdb_00004a3i; pdb_00004a3j; pdb_00004a3k; pdb_00004a3l; pdb_00004a3m; pdb_00004a93; pdb_00004ayb; pdb_00004bbr; pdb_00004bbs; pdb_00004bxx; pdb_00004bxz; pdb_00004by1; pdb_00004by7; pdb_00004c2m; pdb_00004c3h; pdb_00004c3i; pdb_00004c3j; pdb_00004qiw; pdb_00004qjv; pdb_00004v1m; pdb_00004v1n; pdb_00004v1o; pdb_00004v8s; pdb_00004x67; pdb_00004x6a; pdb_00004y52; pdb_00004y7n; pdb_00004ym7; pdb_00005c3e; pdb_00005c44; pdb_00005c4a; pdb_00005c4j; pdb_00005c4x; pdb_00005fj8; pdb_00005fj9; pdb_00005fja; pdb_00005flm; pdb_00005fmf; pdb_00005fyw; pdb_00005fz5; pdb_00005g5l; pdb_00005ip7; pdb_00005ip9; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005lmx; pdb_00005m3f; pdb_00005m3m; pdb_00005m5w; pdb_00005m5x; pdb_00005m5y; pdb_00005m64; pdb_00005n5y; pdb_00005n5z; pdb_00005n60; pdb_00005n61; pdb_00005oa1; pdb_00005oik; pdb_00005oqj; pdb_00005oqm; pdb_00005ot2; pdb_00005sva; pdb_00005u0s; pdb_00005u5q; pdb_00005vvr; pdb_00005vvs; pdb_00005w4u; pdb_00005w51; pdb_00005w5y; pdb_00005w64; pdb_00005w65; pdb_00005w66; pdb_00006blo; pdb_00006blp; pdb_00006bm2; pdb_00006bm4; pdb_00006bqf; pdb_00006cnb; pdb_00006cnc; pdb_00006cnd; pdb_00006cnf; pdb_00006drd; pdb_00006eu0; pdb_00006eu1; pdb_00006eu2; pdb_00006eu3; pdb_00006f40; pdb_00006f41; pdb_00006f42; pdb_00006f44; pdb_00006gyk; pdb_00006gyl; pdb_00006gym; pdb_00006h67; pdb_00006h68; pdb_00006hko; pdb_00006hlq; pdb_00006hlr; pdb_00006hls; pdb_00006i84; pdb_00006kf3; pdb_00006kf4; pdb_00006kf9; pdb_00006o6c; pdb_00006o9l; pdb_00006rqh; pdb_00006rql; pdb_00006rqt; pdb_00006rrd; pdb_00006rui; pdb_00006ruo; pdb_00006rwe; pdb_00006tps; pdb_00006tut; pdb_00006upx; pdb_00006upy; pdb_00006upz; pdb_00006uq0; pdb_00006uq1; pdb_00006uq2; pdb_00006uq3; pdb_00006xre; pdb_00007a6h; pdb_00007ae1; pdb_00007ae3; pdb_00007aea; pdb_00007aoc; pdb_00007aod; pdb_00007aoe; pdb_00007ast; pdb_00007d58; pdb_00007d59; pdb_00007dn3; pdb_00007du2; pdb_00007eu0; pdb_00007eu1; pdb_00007fji; pdb_00007fjj; pdb_00007ked; pdb_00007kee; pdb_00007kef; pdb_00007lbm; pdb_00007mei; pdb_00007mk9; pdb_00007mka; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nkx; pdb_00007nky; pdb_00007o4i; pdb_00007o4j; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007ob9; pdb_00007oba; pdb_00007obb; pdb_00007ok0; pdb_00007oq4; pdb_00007oqy; pdb_00007rim; pdb_00007rip; pdb_00007riq; pdb_00007riw; pdb_00007rix; pdb_00007riy; pdb_00007ui9; pdb_00007uif; pdb_00007uio; pdb_00007vba; pdb_00007vbb; pdb_00007vbc; pdb_00007z0h; pdb_00007z1l; pdb_00007z1m; pdb_00007z1n; pdb_00007z1o; pdb_00007z2z; pdb_00007z30; pdb_00007z31; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; pdb_00008a43; pdb_00008bws; pdb_00008cen; pdb_00008ceo; pdb_00008cro; pdb_00008hyj; pdb_00008ity; pdb_00008iue; pdb_00008iuh; pdb_00008jch; pdb_00008k5p; pdb_00008oki; pdb_00008orq; pdb_00008p2i; pdb_00008qsz; pdb_00008ram; pdb_00008rap; pdb_00008rbo; pdb_00008tug; pdb_00008tvp; pdb_00008tvq; pdb_00008tvs; pdb_00008tvv; pdb_00008tvw; pdb_00008tvx; pdb_00008tvy; pdb_00008ukq; pdb_00008ukr; pdb_00008uks; pdb_00008ukt; pdb_00008uku; pdb_00008umh; pdb_00008umi; pdb_00008uoq; pdb_00008uot; pdb_00008xmb; pdb_00008xmc; pdb_00008xmd; pdb_00008xme; pdb_00009bct; pdb_00009bcu; pdb_00009bvt; pdb_00009bw0; pdb_00009ehz; pdb_00009ei1; pdb_00009ei3; pdb_00009ei4; pdb_00009fso; pdb_00009fsp; pdb_00009fsq; pdb_00009fsr; pdb_00009fss; pdb_00009ja1
» more