Home  |  Contact
Entry: PS00446

General information about the entry

Entry name [info] RNA_POL_D_30KD
Accession [info] PS00446
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-DEC-2004 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00411

Name and characterization of the entry

Description [info] RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info] 
N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x-
[LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 43 in 43 different sequences
Number of true positive hits 43 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.76 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 43 sequences 

CNJC_TETTH  (P16925    ), NRPB3_ARATH (Q39211    ), RPAC1_BOVIN (Q32L22    ), 

RPAC1_DICDI (Q54SN4    ), RPAC1_HUMAN (O15160    ), RPAC1_MOUSE (P52432    ), 
RPAC1_SCHPO (O94616    ), RPAC1_YEAST (P07703    ), RPB3_BOVIN  (Q3T0Q3    ), 
RPB3_HUMAN  (P19387    ), RPB3_MOUSE  (P97760    ), RPB3_SCHPO  (P37382    ), 
RPB3_YEAST  (P16370    ), RPD3B_ARATH (Q39212    ), RPOD_AERPE  (Q9YB53    ), 
RPOD_ARCFU  (O28002    ), RPOD_HALMA  (Q00813    ), RPOD_HALS3  (B0R4Y2    ), 
RPOD_HALSA  (Q9HQJ4    ), RPOD_METAC  (P0CG28    ), RPOD_METJA  (Q57648    ), 
RPOD_METKA  (Q8TVB8    ), RPOD_METMA  (Q8PV16    ), RPOD_METST  (Q2NFZ6    ), 
RPOD_METTH  (O26144    ), RPOD_PYRAB  (Q9V198    ), RPOD_PYRAE  (Q8ZYQ3    ), 
RPOD_PYRAR  (A4WNA4    ), RPOD_PYRCJ  (A3MXZ5    ), RPOD_PYRFU  (Q8U0E4    ), 
RPOD_PYRHO  (O59303    ), RPOD_PYRIL  (A1RSE3    ), RPOD_PYRNV  (B1YC30    ), 
RPOD_SACS2  (P95989    ), RPOD_SULAC  (P39471    ), RPOD_SULIA  (C3N054    ), 
RPOD_SULIK  (C4KJ93    ), RPOD_SULIL  (C3MJP7    ), RPOD_SULIM  (C3MZ05    ), 
RPOD_SULIN  (C3NMQ0    ), RPOD_SULIY  (C3N8R8    ), RPOD_SULTO  (Q96YW0    ), 
RPOD_THEKO  (Q5JJF4    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

RPB3_DICDI  (Q54DH7    ), RPOD_METS3  (A5UN55    ), RPOD_NATPD  (Q3IQT6    ), 

RPOD_PICTO  (Q6KZP5    ), RPOD_THEAC  (Q9HJD9    ), RPOD_THEVO  (Q97B93    )
» more

PDB
[Detailed view]		 195 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6O6C; 6O9L
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission