PROSITE entry PS00446

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS00446
Entry name [info]	RNA_POL_D_30KD
Accession [info]	PS00446
Entry type [info]	PATTERN
Date [info]	01-MAY-1991 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00411

Name and characterization of the entry

Description [info]	RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info]	N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x- [LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.

Total number of hits	44 in 44 different sequences
Number of true positive hits	44 in 44 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	6
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	88.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

44 sequences

CNJC_TETTH  (P16925), NRPB3_ARATH (Q39211), RPAC1_BOVIN (Q32L22),

RPAC1_DICDI (Q54SN4), RPAC1_HUMAN (O15160), RPAC1_MOUSE (P52432), 
RPAC1_SCHPO (O94616), RPAC1_YEAST (P07703), RPB3_BOVIN  (Q3T0Q3), 
RPB3_HUMAN  (P19387), RPB3_MOUSE  (P97760), RPB3_SCHPO  (P37382), 
RPB3_YEAST  (P16370), RPD3B_ARATH (Q39212), RPO3_AERPE  (Q9YB53), 
RPO3_ARCFU  (O28002), RPO3_HALMA  (Q00813), RPO3_HALS3  (B0R4Y2), 
RPO3_HALSA  (Q9HQJ4), RPO3_METAC  (P0CG28), RPO3_METJA  (Q57648), 
RPO3_METKA  (Q8TVB8), RPO3_METMA  (Q8PV16), RPO3_METST  (Q2NFZ6), 
RPO3_METTH  (O26144), RPO3_PYRAB  (Q9V198), RPO3_PYRAE  (Q8ZYQ3), 
RPO3_PYRAR  (A4WNA4), RPO3_PYRCJ  (A3MXZ5), RPO3_PYRFU  (Q8U0E4), 
RPO3_PYRHO  (O59303), RPO3_PYRIL  (A1RSE3), RPO3_PYRNV  (B1YC30), 
RPO3_SACS2  (P95989), RPO3_SACSH  (B8YB56), RPO3_SULAC  (P39471), 
RPO3_SULIA  (C3N054), RPO3_SULIK  (C4KJ93), RPO3_SULIL  (C3MJP7), 
RPO3_SULIM  (C3MZ05), RPO3_SULIN  (C3NMQ0), RPO3_SULIY  (C3N8R8), 
RPO3_SULTO  (Q96YW0), RPO3_THEKO  (Q5JJF4)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

6 sequences

RPB3_DICDI  (Q54DH7), RPO3_METS3  (A5UN55), RPO3_NATPD  (Q3IQT6),

RPO3_PICTO  (Q6KZP5), RPO3_THEAC  (Q9HJD9), RPO3_THEVO  (Q97B93)

» more

PDB
[Detailed view]

320 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A43; 8BWS; 8CEN; 8CEO; 8CRO; 8HYJ; 8ITY; 8IUE; 8IUH; 8JCH; 8K5P; 8OKI; 8ORQ; 8P2I; 8QSZ; 8RBO; 8TUG; 8TVP; 8TVQ; 8TVS; 8TVV; 8TVW; 8TVX; 8TVY; 8UKQ; 8UKR; 8UKS; 8UKT; 8UKU; 8UOQ; 8UOT; 8XMB; 8XMC; 8XMD; 8XME; 9JA1
» more