PROSITE entry PS00446

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General information about the entry

Entry name [info]	RNA_POL_D_30KD
Accession [info]	PS00446
Entry type [info]	PATTERN
Date [info]	01-MAY-1991 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00411

Name and characterization of the entry

Description [info]	RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info]	N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x- [LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	44 in 44 different sequences
Number of true positive hits	44 in 44 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	6
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	88.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

44 sequences

CNJC_TETTH  (P16925), NRPB3_ARATH (Q39211), RPAC1_BOVIN (Q32L22),

RPAC1_DICDI (Q54SN4), RPAC1_HUMAN (O15160), RPAC1_MOUSE (P52432), 
RPAC1_SCHPO (O94616), RPAC1_YEAST (P07703), RPB3_BOVIN  (Q3T0Q3), 
RPB3_HUMAN  (P19387), RPB3_MOUSE  (P97760), RPB3_SCHPO  (P37382), 
RPB3_YEAST  (P16370), RPD3B_ARATH (Q39212), RPO3_AERPE  (Q9YB53), 
RPO3_ARCFU  (O28002), RPO3_HALMA  (Q00813), RPO3_HALS3  (B0R4Y2), 
RPO3_HALSA  (Q9HQJ4), RPO3_METAC  (P0CG28), RPO3_METJA  (Q57648), 
RPO3_METKA  (Q8TVB8), RPO3_METMA  (Q8PV16), RPO3_METST  (Q2NFZ6), 
RPO3_METTH  (O26144), RPO3_PYRAB  (Q9V198), RPO3_PYRAE  (Q8ZYQ3), 
RPO3_PYRAR  (A4WNA4), RPO3_PYRCJ  (A3MXZ5), RPO3_PYRFU  (Q8U0E4), 
RPO3_PYRHO  (O59303), RPO3_PYRIL  (A1RSE3), RPO3_PYRNV  (B1YC30), 
RPO3_SACS2  (P95989), RPO3_SACSH  (B8YB56), RPO3_SULAC  (P39471), 
RPO3_SULIA  (C3N054), RPO3_SULIK  (C4KJ93), RPO3_SULIL  (C3MJP7), 
RPO3_SULIM  (C3MZ05), RPO3_SULIN  (C3NMQ0), RPO3_SULIY  (C3N8R8), 
RPO3_SULTO  (Q96YW0), RPO3_THEKO  (Q5JJF4)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

6 sequences

RPB3_DICDI  (Q54DH7), RPO3_METS3  (A5UN55), RPO3_NATPD  (Q3IQT6),

RPO3_PICTO  (Q6KZP5), RPO3_THEAC  (Q9HJD9), RPO3_THEVO  (Q97B93)

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PDB
[Detailed view]

299 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A43; 8BWS; 8CEN; 8CEO; 8HYJ; 8ITY; 8IUE; 8IUH; 8JCH; 8K5P; 8UKQ; 8UKR; 8UKS; 8UKT; 8UKU
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