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| Entry: PS00446 |
General information about the entry
| Entry name [info] | RNA_POL_D_30KD |
| Accession [info] | PS00446 |
| Entry type [info] | PATTERN |
| Date [info] |
01-MAY-1991 CREATED;
01-DEC-2004 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00411 |
Name and characterization of the entry
| Description [info] | RNA polymerases D / 30 to 40 Kd subunits signature. |
| Pattern [info] |
N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x- [LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV]. |
Numerical results [info]
| Total number of hits | 43 in 43 different sequences |
| Number of true positive hits | 43 in 43 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 6 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 87.76 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
43 sequences
CNJC_TETTH (P16925 ), NRPB3_ARATH (Q39211 ), RPAC1_BOVIN (Q32L22 ), RPAC1_DICDI (Q54SN4 ), RPAC1_HUMAN (O15160 ), RPAC1_MOUSE (P52432 ), RPAC1_SCHPO (O94616 ), RPAC1_YEAST (P07703 ), RPB3_BOVIN (Q3T0Q3 ), RPB3_HUMAN (P19387 ), RPB3_MOUSE (P97760 ), RPB3_SCHPO (P37382 ), RPB3_YEAST (P16370 ), RPD3B_ARATH (Q39212 ), RPOD_AERPE (Q9YB53 ), RPOD_ARCFU (O28002 ), RPOD_HALMA (Q00813 ), RPOD_HALS3 (B0R4Y2 ), RPOD_HALSA (Q9HQJ4 ), RPOD_METAC (P0CG28 ), RPOD_METJA (Q57648 ), RPOD_METKA (Q8TVB8 ), RPOD_METMA (Q8PV16 ), RPOD_METST (Q2NFZ6 ), RPOD_METTH (O26144 ), RPOD_PYRAB (Q9V198 ), RPOD_PYRAE (Q8ZYQ3 ), RPOD_PYRAR (A4WNA4 ), RPOD_PYRCJ (A3MXZ5 ), RPOD_PYRFU (Q8U0E4 ), RPOD_PYRHO (O59303 ), RPOD_PYRIL (A1RSE3 ), RPOD_PYRNV (B1YC30 ), RPOD_SACS2 (P95989 ), RPOD_SULAC (P39471 ), RPOD_SULIA (C3N054 ), RPOD_SULIK (C4KJ93 ), RPOD_SULIL (C3MJP7 ), RPOD_SULIM (C3MZ05 ), RPOD_SULIN (C3NMQ0 ), RPOD_SULIY (C3N8R8 ), RPOD_SULTO (Q96YW0 ), RPOD_THEKO (Q5JJF4 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
6 sequences
RPB3_DICDI (Q54DH7 ), RPOD_METS3 (A5UN55 ), RPOD_NATPD (Q3IQT6 ), RPOD_PICTO (Q6KZP5 ), RPOD_THEAC (Q9HJD9 ), RPOD_THEVO (Q97B93 )» more |
| PDB [Detailed view] |
205 PDB
1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT » more |
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