PROSITE entry PS00489

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS00489

Direct ScanProsite submission

General information about the entry

Entry name [info]	RNA_POL_PHAGE_2
Accession [info]	PS00489
Entry type [info]	PATTERN
Date [info]	01-MAY-1991 CREATED; 01-OCT-1993 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00410
Associated ProRule [info]	PRU10032

Name and characterization of the entry

Description [info]	Bacteriophage-type RNA polymerase family active site signature 2.
Pattern [info]	[LIVMF]-x-R-x(3)-K-x(2)-[LIVMF]-M-[PT]-x(2)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	27 in 27 different sequences
Number of true positive hits	27 in 27 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Bacteriophages, Eukaryotes
Maximum number of repetitions [info]	1
Site [info]	active_site at position 5
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

27 sequences

RPO1B_TOBAC (Q8L6J5), RPO2A_TOBAC (Q8L6J2), RPO2B_TOBAC (Q8L6J3),

RPO3A_TOBAC (P69243), RPO3B_TOBAC (Q8L6J1), RPOL_BPK11  (P18147), 
RPOL_BPSP6  (P06221), RPOL_BPT3   (P07659), RPOL_BPT7   (P00573), 
RPOM_HUMAN  (O00411), RPOM_MOUSE  (Q8BKF1), RPOM_NEUCR  (P38671), 
RPOM_SCHPO  (O13993), RPOM_YEAST  (P13433), RPOP_AGABT  (P33539), 
RPOP_CLAPU  (P22372), RPOP_GELSP  (O03685), RPOP_MAIZE  (P10581), 
RPOP_NEUCS  (P33540), RPOP_NEUIN  (P33541), RPOP_PODAS  (Q01521), 
RPOT1_ARATH (P92969), RPOT1_NICSY (Q93Y94), RPOT2_ARATH (Q9LFV6), 
RPOT2_NICSY (Q8VWF8), RPOT3_ARATH (O24600), RPOT3_NICSY (P69242)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

41 PDB

pdb_00001aro; pdb_00001cez; pdb_00001h38; pdb_00001msw; pdb_00001qln; pdb_00001s0v; pdb_00001s76; pdb_00001s77; pdb_00002pi4; pdb_00002pi5; pdb_00003e2e; pdb_00003e3j; pdb_00003spa; pdb_00004boc; pdb_00004rnp; pdb_00005ola; pdb_00006erp; pdb_00006erq; pdb_00006ymv; pdb_00006ymw; pdb_00007a8p; pdb_00007pzp; pdb_00007pzr; pdb_00007zc4; pdb_00008ap1; pdb_00008att; pdb_00008atv; pdb_00008atw; pdb_00008c5s; pdb_00008c5u; pdb_00008dh0; pdb_00008dh1; pdb_00008dh2; pdb_00008dh3; pdb_00008dh4; pdb_00008dh5; pdb_00008q63; pdb_00008u8u; pdb_00008u8v; pdb_00009bdc; pdb_00009bdd
» more