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PROSITE entry PS00508


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PURL: https://purl.expasy.org/prosite/signature/PS00508

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General information about the entry

Entry name [info] NI_HGENASE_L_2
Accession [info] PS00508
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-JAN-2008 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00400

Name and characterization of the entry

Description [info] Nickel-dependent hydrogenases large subunit signature 2.
Pattern [info] 
[FY]-D-[PI]-[CU]-[LIMAV]-[ASG]-C-x(2,3)-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 34 in 34 different sequences
Number of true positive hits 34 in 34 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.00 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] nickel at position 4
Site [info] nickel at position 7
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 34 sequences 

FRHA_METBF  (P80489), FRHA_METJA  (Q60338), FRHA_METTH  (P19496), 

FRHA_METVO  (Q00390), HOXH_CUPNH  (P22320), HYD1A_PYRFU (E7FI44), 
HYD2A_PYRFU (E7FHC4), MBHL_AFIC5  (O33406), MBHL_ALCHY  (P33374), 
MBHL_AZOCH  (P18191), MBHL_AZOVI  (P21949), MBHL_BRADU  (P12636), 
MBHL_CITFR  (Q46046), MBHL_CUPNH  (P31891), MBHL_ECOLI  (P0ACD8), 
MBHL_RHILV  (P18636), MBHL_RHOCA  (P15284), MBHL_RUBGE  (P17632), 
MBHL_SHIFL  (P0ACD9), MBHL_WOLSU  (P31883), MBHM_ECO57  (P0ACE1), 
MBHM_ECOLI  (P0ACE0), MBHM_SHIFL  (P0ACE2), MVHA_METFE  (Q49179), 
MVHA_METTH  (Q50783), MVHA_METTM  (P60227), PHNL_MEGGA  (P12944), 
PHNL_NITV9  (P21852), PHNL_SOLFR  (P18188), PHSL_DESBA  (P13065), 
VHCA_METVO  (Q00404), VHOA_METMA  (Q50249), VHTA_METMA  (F1SVF8), 
VHUU_METKA  (P0C1V6)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

VHCA_ARCPA  (P84625), VHUA_METJA  (Q58592), VHUA_METVO  (Q00407), 

VHUU_METJA  (P81335), VHUU_METMP  (P0C1V5), VHUU_METVO  (Q00410)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

HOXH_RHOOP  (P22661), PHSL_DESNO  (P13066)


				
	

	

		PDB
[Detailed view]		
		
			87 PDB
			


			pdb_00001cc1; pdb_00001frf; pdb_00001frv; pdb_00001h2a; pdb_00001h2r; pdb_00001ubh; pdb_00001ubj; pdb_00001ubk; pdb_00001ubl; pdb_00001ubm; pdb_00001ubo; pdb_00001ubr; 
			
				pdb_00001ubt; pdb_00001ubu; pdb_00001wuh; pdb_00001wui; pdb_00001wuj; pdb_00001wuk; pdb_00001wul; pdb_00001yq9; pdb_00001yqw; pdb_00001yrq; pdb_00002frv; pdb_00003cur; 
				pdb_00003cus; pdb_00003h3x; pdb_00003rgw; pdb_00003uqy; pdb_00003usc; pdb_00003use; pdb_00004gd3; pdb_00004iub; pdb_00004iuc; pdb_00004iud; pdb_00004ttt; pdb_00004u9h; 
				pdb_00004u9i; pdb_00004ucq; pdb_00004ucw; pdb_00004ucx; pdb_00004ue2; pdb_00004ue3; pdb_00004ue6; pdb_00004uew; pdb_00004upe; pdb_00004upv; pdb_00004uql; pdb_00004uqp; 
				pdb_00004urh; pdb_00005a4f; pdb_00005a4m; pdb_00005d51; pdb_00005jrd; pdb_00005lmm; pdb_00005lry; pdb_00005mdj; pdb_00005mdk; pdb_00005mdl; pdb_00005xle; pdb_00005xlf; 
				pdb_00005xlg; pdb_00005xlh; pdb_00005y4n; pdb_00006ehq; pdb_00006ehs; pdb_00006en9; pdb_00006fpi; pdb_00006fpo; pdb_00006fpw; pdb_00006g7m; pdb_00006g7r; pdb_00006g94; 
				pdb_00006gal; pdb_00006gam; pdb_00006gan; pdb_00006rp2; pdb_00006syo; pdb_00007nem; pdb_00007odg; pdb_00007odh; pdb_00008pou; pdb_00008pov; pdb_00008pow; pdb_00008pox; 
				pdb_00008poy; pdb_00008poz; pdb_00008w6x
			
			

			» more