PROSITE logo

PROSITE entry PS00508


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] NI_HGENASE_L_2
Accession [info] PS00508
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-JAN-2008 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00400

Name and characterization of the entry

Description [info] Nickel-dependent hydrogenases large subunit signature 2.
Pattern [info] 
[FY]-D-[PI]-[CU]-[LIMAV]-[ASG]-C-x(2,3)-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 34 in 34 different sequences
Number of true positive hits 34 in 34 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.00 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] nickel at position 4
Site [info] nickel at position 7
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 34 sequences 

FRHA_METBF  (P80489), FRHA_METJA  (Q60338), FRHA_METTH  (P19496), 

FRHA_METVO  (Q00390), HOXH_CUPNH  (P22320), HYD1A_PYRFU (E7FI44), 
HYD2A_PYRFU (E7FHC4), MBHL_AFIC5  (O33406), MBHL_ALCHY  (P33374), 
MBHL_AZOCH  (P18191), MBHL_AZOVI  (P21949), MBHL_BRADU  (P12636), 
MBHL_CITFR  (Q46046), MBHL_CUPNH  (P31891), MBHL_ECOLI  (P0ACD8), 
MBHL_RHILV  (P18636), MBHL_RHOCA  (P15284), MBHL_RUBGE  (P17632), 
MBHL_SHIFL  (P0ACD9), MBHL_WOLSU  (P31883), MBHM_ECO57  (P0ACE1), 
MBHM_ECOLI  (P0ACE0), MBHM_SHIFL  (P0ACE2), MVHA_METFE  (Q49179), 
MVHA_METTH  (Q50783), MVHA_METTM  (P60227), PHNL_MEGGA  (P12944), 
PHNL_NITV9  (P21852), PHNL_SOLFR  (P18188), PHSL_DESBA  (P13065), 
VHCA_METVO  (Q00404), VHOA_METMA  (Q50249), VHTA_METMA  (F1SVF8), 
VHUU_METKA  (P0C1V6)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

VHCA_ARCPA  (P84625), VHUA_METJA  (Q58592), VHUA_METVO  (Q00407), 

VHUU_METJA  (P81335), VHUU_METMP  (P0C1V5), VHUU_METVO  (Q00410)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

HOXH_RHOOP  (P22661), PHSL_DESNO  (P13066)


				
	

	

		PDB
[Detailed view]		
		
			84 PDB
			


			1CC1; 1FRF; 1FRV; 1H2A; 1H2R; 1UBH; 1UBJ; 1UBK; 1UBL; 1UBM; 1UBO; 1UBR; 
			
				1UBT; 1UBU; 1WUH; 1WUI; 1WUJ; 1WUK; 1WUL; 1YQ9; 1YQW; 1YRQ; 2FRV; 3CUR; 
				3CUS; 3H3X; 3RGW; 3UQY; 3USC; 3USE; 4GD3; 4IUB; 4IUC; 4IUD; 4TTT; 4U9H; 
				4U9I; 4UCQ; 4UCW; 4UCX; 4UE2; 4UE3; 4UE6; 4UEW; 4UPE; 4UPV; 4UQL; 4UQP; 
				4URH; 5A4F; 5A4M; 5D51; 5JRD; 5LMM; 5LRY; 5MDJ; 5MDK; 5MDL; 5XLE; 5XLF; 
				5XLG; 5XLH; 5Y4N; 6EHQ; 6EHS; 6EN9; 6FPI; 6FPO; 6FPW; 6G7M; 6G7R; 6G94; 
				6GAL; 6GAM; 6GAN; 6RP2; 6SYO; 7NEM; 7ODG; 7ODH; 8POU; 8POV; 8POW; 8W6X
			
			

			» more