PROSITE entry PS00516
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PURL: https://purl.expasy.org/prosite/signature/PS00516
Direct ScanProsite submission
General information about the entry
| Entry name [info] | ALKYLBASE_DNA_GLYCOS |
| Accession [info] | PS00516 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00447 |
Name and characterization of the entry
| Description [info] | Alkylbase DNA glycosidases alkA family signature. |
| Pattern [info] |
G-[IV]-[GK]-x-W-[ST]-[AVI]-x-[LIVMFY](2)-x-[LIVM]-x(8)-[MF]-x(2)-[ED]-D. |
Numerical results [info]
| Total number of hits | 5 in 5 different sequences |
| Number of true positive hits | 5 in 5 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 1 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 83.33 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
5 sequences
3MG2_ECOLI (P04395), 3MGA_BACSU (P37878), MAG1_SCHPO (Q92383), MAG2_SCHPO (O94468), MAG_YEAST (P22134)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
1 sequence
YFJP_BACSU (O31544) |
| PDB [Detailed view] |
20 PDB
pdb_00001diz; pdb_00001mpg; pdb_00001pvs; pdb_00003cvs; pdb_00003cvt; pdb_00003cw7; pdb_00003cwa; pdb_00003cws; pdb_00003cwt; pdb_00003cwu; pdb_00003d4v; pdb_00003ogd; pdb_00003oh6; pdb_00003oh9; pdb_00003s6i; pdb_00004b21; pdb_00004b22; pdb_00004b23; pdb_00004b24; pdb_00004hsb » more |