PROSITE logo

PROSITE entry PS00578


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] RIBOSOMAL_S6E
Accession [info] PS00578
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00500

Name and characterization of the entry

Description [info] Ribosomal protein S6e signature.
Pattern [info] 
[LIVM]-[STAMR]-G-G-x-[DG]-x(2)-G-x-[PV]-M.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 76 in 76 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 17
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 96.20 %
Recall (true positives / (true positives + false negatives)) 81.72 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 76 sequences 

RS62_ARATH  (P51430), RS6A_CANAL  (A0A1D8PL99), RS6A_SCHPO  (P05752), 

RS6A_YEAST  (P0CX37), RS6B_SCHPO  (Q9C0Z7), RS6B_YEAST  (P0CX38), 
RS6E_AERPE  (Q9Y9B6), RS6E_ARCFU  (O29739), RS6E_CALMQ  (A8MA52), 
RS6E_HALLT  (B9LR51), RS6E_HALMA  (P21509), RS6E_HALS3  (B0R815), 
RS6E_HALSA  (Q9HMJ5), RS6E_HALWD  (Q18DP5), RS6E_HYPBU  (A2BJZ7), 
RS6E_METAC  (Q8TQL4), RS6E_METAR  (Q0W8B4), RS6E_METBF  (Q466D6), 
RS6E_METBU  (Q12Z92), RS6E_METJA  (P54067), RS6E_METKA  (Q8TVE6), 
RS6E_METMA  (Q8PU79), RS6E_METS5  (A4YIY0), RS6E_METST  (Q2NGM7), 
RS6E_METTH  (O26360), RS6E_NANEQ  (Q74MJ5), RS6E_NATPD  (Q3ISW0), 
RS6E_NITMS  (A9A110), RS6E_PYRAB  (Q9UYS3), RS6E_PYRAE  (Q8ZX25), 
RS6E_PYRAR  (A4WIK0), RS6E_PYRCJ  (A3MUD0), RS6E_PYRFU  (Q8U3H8), 
RS6E_PYRHO  (O58349), RS6E_PYRIL  (A1RUW1), RS6E_PYRNV  (B1YCP4), 
RS6E_SACS2  (Q980A6), RS6E_STAMF  (A3DMS1), RS6E_SULIA  (C3MZ52), 
RS6E_SULIK  (C4KID0), RS6E_SULIL  (C3MR04), RS6E_SULIM  (C3MWZ2), 
RS6E_SULIY  (C3N772), RS6E_SULTO  (Q975N7), RS6E_THEKO  (Q5JDK8), 
RS6E_THEON  (B6YW70), RS6E_THESM  (C6A2D7), RS6_AEDAE   (Q9U761), 
RS6_AEDAL   (Q9U762), RS6_APLCA   (Q9BMX5), RS6_ASPOF   (Q9M3V8), 
RS6_BOVIN   (Q5E995), RS6_BRAFL   (O01727), RS6_CANGA   (Q6FJH3), 
RS6_CHICK   (P47838), RS6_DEBHA   (Q6BXH8), RS6_DICDI   (Q54UU3), 
RS6_DROME   (P29327), RS6_ENCCU   (Q8SRY0), RS6_EREGS   (Q74ZK3), 
RS6_GLOMM   (Q2PQM1), RS6_HUMAN   (P62753), RS6_ICTPU   (Q90YR8), 
RS6_KLULA   (Q6CM04), RS6_KLUMA   (P41798), RS6_LEIIN   (O44012), 
RS6_LEIMA   (Q9NE83), RS6_MACFA   (Q4R4K6), RS6_MANSE   (Q94624), 
RS6_MOUSE   (P62754), RS6_ONCMY   (Q9YGF2), RS6_RAT (P62755), 
RS6_SPOFR   (Q95V32), RS6_TOBAC   (P29345), RS6_XENLA   (P39017), 
RS6_YARLI   (Q6C169)
» more

UniProtKB/Swiss-Prot
False negative sequences		 17 sequences 

RS61_ARATH  (O48549), RS6E_METB6  (A7IAP8), RS6E_METHJ  (Q2FU50), 

RS6E_METLZ  (A2STM7), RS6E_METM5  (A4FWX0), RS6E_METM6  (A9AAA5), 
RS6E_METM7  (A6VGE7), RS6E_METMJ  (A3CSP5), RS6E_METMP  (Q6LXY7), 
RS6E_METPE  (B8GJR6), RS6E_METS3  (A5UJM8), RS6E_PICTO  (Q6L1H6), 
RS6E_SULAC  (Q4JAI1), RS6E_THEAC  (Q9HLA6), RS6E_THEGJ  (C5A7C4), 
RS6E_THEVO  (Q978W7), RS6_CAEEL   (Q9NEN6)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

BCL9L_HUMAN (Q86UU0), BCL9L_MOUSE (Q67FY2), Y886_HAEIN  (P44069)


				
	

	

		PDB
[Detailed view]		
		
			258 PDB
			


			3J16; 3J6X; 3J6Y; 3J77; 3J78; 3J80; 3J81; 3JAM; 3JAP; 4U3M; 4U3N; 4U3U; 
			
				4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 4U52; 4U53; 4U55; 
				4U56; 4U6F; 4UG0; 4V4N; 4V6U; 4V6W; 4V6X; 4V88; 4V8Y; 4V8Z; 4V92; 5A2Q; 
				5AJ0; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 5FLX; 5I4L; 5IT7; 5IT9; 
				5JB3; 5JBH; 5JUO; 5JUP; 5JUS; 5JUT; 5JUU; 5LKS; 5LL6; 5LYB; 5M1J; 5MC6; 
				5MEI; 5NDG; 5NDV; 5NDW; 5OA3; 5OBM; 5ON6; 5OSG; 5T2C; 5TBW; 5TGA; 5TGM; 
				5TZS; 5VYC; 5WLC; 5WYJ; 6AZ1; 6EML; 6FAI; 6FEC; 6FYX; 6FYY; 6G18; 6G4S; 
				6G4W; 6G51; 6G53; 6G5H; 6G5I; 6GQ1; 6GQB; 6GQV; 6GSM; 6GSN; 6HHQ; 6I7O; 
				6IP5; 6IP6; 6IP8; 6KE6; 6LQP; 6LQQ; 6LQR; 6LQS; 6LQT; 6LQU; 6LQV; 6OLE; 
				6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QZP; 6RBD; 6RBE; 6S47; 6SKF; 
				6SKG; 6SNT; 6SV4; 6SW9; 6SWC; 6SWD; 6T4Q; 6T7I; 6T7T; 6T83; 6TB3; 6TH6; 
				6TNU; 6UZ7; 6WDR; 6WOO; 6XA1; 6XIQ; 6XIR; 6XU6; 6XU7; 6XU8; 6Y0G; 6Y2L; 
				6Y57; 6Y7C; 6YBW; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZCE; 6ZLW; 6ZM7; 6ZME; 
				6ZMI; 6ZMO; 6ZMT; 6ZMW; 6ZN5; 6ZOJ; 6ZOK; 6ZON; 6ZP4; 6ZQB; 6ZQC; 6ZQD; 
				6ZQE; 6ZQF; 6ZQG; 6ZU9; 6ZUO; 6ZV6; 6ZVH; 6ZVI; 6ZVJ; 6ZXD; 6ZXE; 6ZXF; 
				6ZXG; 6ZXH; 7A09; 7A1G; 7AJT; 7AJU; 7B7D; 7CPU; 7CPV; 7D4I; 7D5T; 7D63; 
				7K5I; 7LS1; 7LS2; 7MPI; 7MPJ; 7MQ8; 7MQ9; 7MQA; 7N8B; 7NRC; 7NRD; 7PZY; 
				7Q08; 7Q0F; 7Q0P; 7Q0R; 7QEP; 7QGG; 7QP6; 7QP7; 7QVP; 7R4X; 7SUK; 7TQL; 
				7WTL; 7WTM; 7WTN; 7WTO; 7WTP; 7WTQ; 7WTR; 7WTS; 7WTT; 7WTU; 7WTV; 7WTW; 
				7WTX; 7WTZ; 7WU0; 7XNX; 7XNY; 7ZAG; 7ZAH; 7ZAI; 7ZHG; 7ZJW; 7ZJX; 7ZPQ; 
				7ZRS; 7ZUW; 7ZUX; 7ZW0; 8BQD; 8BQX; 8C00; 8C01; 8C83; 8CAH; 8CAS; 8CBJ; 
				8G5Y; 8G5Z; 8G60; 8G61; 8G6J; 8GLP
			
			

			» more